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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055750 ID=TCONS_00055750|Name=TCONS_00055750|organism=Clytia hemisphaerica|type=transcript|length=881bp
GAAAAAACTCTAAAGTTAAAAGTTCTCATAAAGAAGAGTCTAACACAAGA
ATTGAAAATGACTTAAAAGATCGTATCAAATTGAGGGATGCCTTACAGTT
ATGTGCTCACCCTTTCGATCCAGAGTCCAACAATCAAAATCTTCTCATAA
ACAACTACACGGGTGAGATTGCCCCTGATGAGTGCAATGTTCAGAGGTCT
CTGAAAATTGGCGCAAAACAGTTATCCAATTTCGTATCTCATCTTCCTAC
TGGTTTCTACAGCACTATTCAAAAGAAAGTCGTTACAATGGCAAGCAAAC
CCAAACGCAAGGATTCCACTGAACATGAAATGTACAACACTGAAATGTTA
TACTCCCGTGTCATGTGCCTTTTGAGCGTTGATCAAATTTCTCTTGATGA
TTTATTCAAATATGAACTATCACCGATTCCACTTTCGATGTTTAAATCCA
CTGGAGAAGGCAGATTCCCTTCCAACAAgtcttctttaaaaaagaagctt
aaagtagaaatttccaaaagaaacaTCAAATCGGATGCAATCATCATAGA
TGGGTGCGCTGCTTTATACCATGTACACTGGCCTAAAGAAGCAAAAGTCT
CAGATTTTGTCGACTCTTTTGTTCAATACATCGCAAAATTCCTTCAACAC
AGCACGGTTTTCCTCATCTTTGATCGCTACAGAGACTACAGCATAAAAGG
ACAGACAAGGTTGAAACGCCTAGGCAATCATCTCCGCACGCATGTATTGA
CGTTGGAAACACCGCTACCTCCCAAAGAAATGACTTTGAAGTCTAGAATC
CAACTAAAATCCAGCTGATCAACCTGATTTGCGATTCACTTCTCAACCAC
TTCACAATCAAAAAGTGTCAACAAACATTGT Run BLAST on NCBI protein sequence of TCONS_00055750-protein >TCONS_00055750-protein ID=TCONS_00055750-protein|Name=TCONS_00055750-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
KNSKVKSSHKEESNTRIENDLKDRIKLRDALQLCAHPFDPESNNQNLLIN
NYTGEIAPDECNVQRSLKIGAKQLSNFVSHLPTGFYSTIQKKVVTMASKP
KRKDSTEHEMYNTEMLYSRVMCLLSVDQISLDDLFKYELSPIPLSMFKST
GEGRFPSNKSSLKKKLKVEISKRNIKSDAIIIDGCAALYHVHWPKEAKVS
DFVDSFVQYIAKFLQHSTVFLIFDRYRDYSIKGQTRLKRLGNHLRTHVLT
LETPLPPKEMTLKSRIQLKSS Run BLAST on NCBI transcript from alignment at scaffold_258:138228..139108 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055750 ID=TCONS_00055750|Name=TCONS_00055750|organism=Clytia hemisphaerica|type=transcript|length=881bp|location=Sequence derived from alignment at scaffold_258:138228..139108 (Clytia hemisphaerica)
ACAATGTTTGTTGACACTTTTTGATTGTGAAGTGGTTGAGAAGTGAATCG
CAAATCAGGTTGATCAGCTGGATTTTAGTTGGATTCTAGACTTCAAAGTC
ATTTCTTTGGGAGGTAGCGGTGTTTCCAACGTCAATACATGCGTGCGGAG
ATGATTGCCTAGGCGTTTCAACCTTGTCTGTCCTTTTATGCTGTAGTCTC
TGTAGCGATCAAAGATGAGGAAAACCGTGCTGTGTTGAAGGAATTTTGCG
ATGTATTGAACAAAAGAGTCGACAAAATCTGAGACTTTTGCTTCTTTAGG
CCAGTGTACATGGTATAAAGCAGCGCACCCATCTATGATGATTGCATCCG
ATTTGAtgtttcttttggaaatttctactttaagcttcttttttaaagaa
gacTTGTTGGAAGGGAATCTGCCTTCTCCAGTGGATTTAAACATCGAAAG
TGGAATCGGTGATAGTTCATATTTGAATAAATCATCAAGAGAAATTTGAT
CAACGCTCAAAAGGCACATGACACGGGAGTATAACATTTCAGTGTTGTAC
ATTTCATGTTCAGTGGAATCCTTGCGTTTGGGTTTGCTTGCCATTGTAAC
GACTTTCTTTTGAATAGTGCTGTAGAAACCAGTAGGAAGATGAGATACGA
AATTGGATAACTGTTTTGCGCCAATTTTCAGAGACCTCTGAACATTGCAC
TCATCAGGGGCAATCTCACCCGTGTAGTTGTTTATGAGAAGATTTTGATT
GTTGGACTCTGGATCGAAAGGGTGAGCACATAACTGTAAGGCATCCCTCA
ATTTGATACGATCTTTTAAGTCATTTTCAATTCTTGTGTTAGACTCTTCT
TTATGAGAACTTTTAACTTTAGAGTTTTTTC Coding sequence (CDS) from alignment at scaffold_258:138228..139108 >TCONS_00055750 ID=TCONS_00055750|Name=TCONS_00055750|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_258:138228..139108 (Clytia hemisphaerica)
TCAGCTGGATTTTAGTTGGATTCTAGACTTCAAAGTCATTTCTTTGGGAG
GTAGCGGTGTTTCCAACGTCAATACATGCGTGCGGAGATGATTGCCTAGG
CGTTTCAACCTTGTCTGTCCTTTTATGCTGTAGTCTCTGTAGCGATCAAA
GATGAGGAAAACCGTGCTGTGTTGAAGGAATTTTGCGATGTATTGAACAA
AAGAGTCGACAAAATCTGAGACTTTTGCTTCTTTAGGCCAGTGTACATGG
TATAAAGCAGCGCACCCATCTATGATGATTGCATCCGATTTGAtgtttct
tttggaaatttctactttaagcttcttttttaaagaagacTTGTTGGAAG
GGAATCTGCCTTCTCCAGTGGATTTAAACATCGAAAGTGGAATCGGTGAT
AGTTCATATTTGAATAAATCATCAAGAGAAATTTGATCAACGCTCAAAAG
GCACATGACACGGGAGTATAACATTTCAGTGTTGTACATTTCATGTTCAG
TGGAATCCTTGCGTTTGGGTTTGCTTGCCATTGTAACGACTTTCTTTTGA
ATAGTGCTGTAGAAACCAGTAGGAAGATGAGATACGAAATTGGATAACTG
TTTTGCGCCAATTTTCAGAGACCTCTGAACATTGCACTCATCAGGGGCAA
TCTCACCCGTGTAGTTGTTTATGAGAAGATTTTGATTGTTGGACTCTGGA
TCGAAAGGGTGAGCACATAACTGTAAGGCATCCCTCAATTTGATACGATC
TTTTAAGTCATTTTCAATTCTTGTGTTAGACTCTTCTTTATGAGAACTTT
TAACTTTAGAGTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055750-exon-scaffold_258-1491911889:138228..139108 | TCONS_00055750-exon-scaffold_258-1491911889:138228..139108 | Clytia hemisphaerica | exon |
| TCONS_00055750-exon-scaffold_258-1510915933:138228..139108 | TCONS_00055750-exon-scaffold_258-1510915933:138228..139108 | Clytia hemisphaerica | exon |
| TCONS_00055750-exon-scaffold_258-1575043694:138228..139108 | TCONS_00055750-exon-scaffold_258-1575043694:138228..139108 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_258 | supercontig | scaffold_258:138228..139108 . |
Blast
The following BLAST results are available for this feature:
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