TCONS_00055741 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055741
Unique NameTCONS_00055741
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055741 ID=TCONS_00055741|Name=TCONS_00055741|organism=Clytia hemisphaerica|type=transcript|length=558bp
GATAACAAACCCAATTTCTGTTGGTTTGGAAGAAATTTTATCACCGTGTG
ACCATGAAGAAGCCGACACTCATATGACACTGCACGCGAGCAATATCCTT
GAAGATGTGTCATCGGTCACCTTAAGAACAGTTGATACAGATGTGTTACT
TCTTGTTGTAGCTTTATCTAGCATGTACCCAACGAAAAAGGTCTGGGTCA
GCTTTGGCGTCGGTGATCAAAAGACAATGTTTTCGGCACATGAAATCCGC
ATTCAAGTTGGTCCGGAGAAAGCTCAGGCACTGCCAATGTTCAATGCTTT
CACAGGCTGCGACACAGTGTCCTCATTTAGAAATGTCGACAAGAAAACGA
CATGGGAAAGGTGGGCATCGTTTGATGATGTTACTGACGCTTTTCTCCAC
TTGACAAAATCACCAGACGACCTGAACGAGGAAACCGAAGCTCTTCTCGA
ACGTTTTGCAATCCTCCTGTACGATAAAACAAGTCCGCTAACGAGTATCA
ATCTTCTACGCAAAGAACTCTTTAACCGAAGTCGCTTAATTGAAAAGATT
CCACCCAC
Run BLAST on NCBI

protein sequence of TCONS_00055741-protein

>TCONS_00055741-protein ID=TCONS_00055741-protein|Name=TCONS_00055741-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
ITNPISVGLEEILSPCDHEEADTHMTLHASNILEDVSSVTLRTVDTDVLL
LVVALSSMYPTKKVWVSFGVGDQKTMFSAHEIRIQVGPEKAQALPMFNAF
TGCDTVSSFRNVDKKTTWERWASFDDVTDAFLHLTKSPDDLNEETEALLE
RFAILLYDKTSPLTSINLLRKELFNRSRLIEKIPP
Run BLAST on NCBI

transcript from alignment at scaffold_258:6454..7011

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055741 ID=TCONS_00055741|Name=TCONS_00055741|organism=Clytia hemisphaerica|type=transcript|length=558bp|location=Sequence derived from alignment at scaffold_258:6454..7011 (Clytia hemisphaerica)
GTGGGTGGAATCTTTTCAATTAAGCGACTTCGGTTAAAGAGTTCTTTGCG
TAGAAGATTGATACTCGTTAGCGGACTTGTTTTATCGTACAGGAGGATTG
CAAAACGTTCGAGAAGAGCTTCGGTTTCCTCGTTCAGGTCGTCTGGTGAT
TTTGTCAAGTGGAGAAAAGCGTCAGTAACATCATCAAACGATGCCCACCT
TTCCCATGTCGTTTTCTTGTCGACATTTCTAAATGAGGACACTGTGTCGC
AGCCTGTGAAAGCATTGAACATTGGCAGTGCCTGAGCTTTCTCCGGACCA
ACTTGAATGCGGATTTCATGTGCCGAAAACATTGTCTTTTGATCACCGAC
GCCAAAGCTGACCCAGACCTTTTTCGTTGGGTACATGCTAGATAAAGCTA
CAACAAGAAGTAACACATCTGTATCAACTGTTCTTAAGGTGACCGATGAC
ACATCTTCAAGGATATTGCTCGCGTGCAGTGTCATATGAGTGTCGGCTTC
TTCATGGTCACACGGTGATAAAATTTCTTCCAAACCAACAGAAATTGGGT
TTGTTATC

Coding sequence (CDS) from alignment at scaffold_258:6454..7011

>TCONS_00055741 ID=TCONS_00055741|Name=TCONS_00055741|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at scaffold_258:6454..7011 (Clytia hemisphaerica)
GGGTGGAATCTTTTCAATTAAGCGACTTCGGTTAAAGAGTTCTTTGCGTA
GAAGATTGATACTCGTTAGCGGACTTGTTTTATCGTACAGGAGGATTGCA
AAACGTTCGAGAAGAGCTTCGGTTTCCTCGTTCAGGTCGTCTGGTGATTT
TGTCAAGTGGAGAAAAGCGTCAGTAACATCATCAAACGATGCCCACCTTT
CCCATGTCGTTTTCTTGTCGACATTTCTAAATGAGGACACTGTGTCGCAG
CCTGTGAAAGCATTGAACATTGGCAGTGCCTGAGCTTTCTCCGGACCAAC
TTGAATGCGGATTTCATGTGCCGAAAACATTGTCTTTTGATCACCGACGC
CAAAGCTGACCCAGACCTTTTTCGTTGGGTACATGCTAGATAAAGCTACA
ACAAGAAGTAACACATCTGTATCAACTGTTCTTAAGGTGACCGATGACAC
ATCTTCAAGGATATTGCTCGCGTGCAGTGTCATATGAGTGTCGGCTTCTT
CATGGTCACACGGTGATAAAATTTCTTCCAAACCAACAGAAATTGGGTTT
GTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035084XLOC_035084Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055741-proteinTCONS_00055741-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055741-exon-scaffold_258-1491911889:6454..7011TCONS_00055741-exon-scaffold_258-1491911889:6454..7011Clytia hemisphaericaexon
TCONS_00055741-exon-scaffold_258-1510915933:6454..7011TCONS_00055741-exon-scaffold_258-1510915933:6454..7011Clytia hemisphaericaexon
TCONS_00055741-exon-scaffold_258-1575043694:6454..7011TCONS_00055741-exon-scaffold_258-1575043694:6454..7011Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:6454..7011 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.875355	0.450427	0	0	0.130694	0	0.0856631	0.106108	0	0	0.0676078	0	0.115447	1.08189	0.951245	0.172594	0.120148	0.226158	0.223269	0.339588	0	0	0.109143	0.584445	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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