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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055732 ID=TCONS_00055732|Name=TCONS_00055732|organism=Clytia hemisphaerica|type=transcript|length=1902bp
aTTCAGTTGGTGAAGGCGGCAAGATGGCAAACGTTGAAAGTGATAAAAGT
GATATTTCAAGCAGTTTTGAAAATGATTCGGATTTAGATGATGCAAGTTT
AAGTGATGACGAGACAGAGAGCAGAGAAGATCTAATAATAAATGAAGAAG
ATTTGAGTGGTGGCTCAGATGATGCGACACTGGTTGAGATTCCAAACCTT
GTTTTTGTTAACGAGAAAAACATCACTGTGCTTGTTGAACAAGACAGTCA
ACAAGTTCCTGAGCACGTGTTTGGAAAAGCCATAGATTTAGCAAGAAAAG
CAAAATTCCAATGCCCCTACTGTGGAAAACTCTACATCAGAGAATTCCAT
TATAAAAAGCACTTGGATCTGTGTGATAAAAAAGATGTTCAAGCCAGGCG
TACTGAGACCGATGCAAACAATGATGATATAAATAGTGACTTAGATGATG
CTGCTGAAGAGGAAATTGTTCAGAGGGGCATATCATATTTGGCGAATGCG
TTTGAGGAAGCGATTGTTTATCCCTACTTTAACATGGCTGAACCTGGTAT
TTCTGTTGGAAAATTAGCACGAGCAGTGAAGTCCAAATTACTATCGTTAA
AGCAAAGAAATGATGATGCAAATGAAAGTGAAGAAGACCAATGTGACGAT
GCTTGTAAAGCGTTTAGAAGCTACAGTCGCTACCTtcttgacatttttga
gaatcaaCTTGTCAAGGATTCAAAGAACATCATCAAAAGAACTGCATCca
cttttcagaaattttacaaCTATTGTACTGATGAGAAGGAAATAAAACGC
TGGGACGACTTCTTACATGATTTGGGTATAGCAGCAGACACCATACATAC
CCAACCATTGTACAACTCCATAATGAACTCTTTTCTAAGACAGTGCATAT
CAGCTTTGAAGACATTCAAATTACTAGAAGCGAAGAAGAAACCATCTACT
ATGTGGCAGGATACATAGTTTTTTCGTTGAAGAAAAATGTTAAGCATAAG
CTTTCTACAAACAGTAAAGCTATCATTGCGTTGCTAAACAGTTGGGGTGC
AAAGGTGACAATAAATATGGTGATATTAACATTGAAGAATATACACGAGC
TTGGTTGGAAAGAGTTAATCGCGGTGGACTGTTCCACGTAAATAgtgaat
tttatgattttgtagtTGCAATTGAAAAGTCAGCAAGaacaattttgaat
atttcattgttttctacGTACACTGGGCAAAATTTAAAGGAGGTTCTcct
gcaaaaatttgaaaataatctagCCATTCAAAATGCCTGGAAACAACTTG
CAAGCAACTTTACAGCTGGAGATACTTTGAAAGAcaagctttttaaaaaa
ctgCTTGTGAAATGGATTAATGTGAGAGCATATGCTTTCGTTAAAGTATG
GATGCTTCAATATAAGTTAGACCAACGAAAAGCCGGAGAGGAGGTTTCAG
AACAAGCGGAGCCAGCTTTAAGGAAAGGTTTGAAGAAGAAAGCAGTTAAG
AGGAAAGTTGATAGAACTTTAATTTcaccaaagaaaaaaacaacatctaC
AAAGAAATTACCTAAAGACAAACCTTCAAAAGTCAGTGCTGCAGCATCCA
AGcttcaaaaagcaaaaaaaattttaaacaataaaaaaaagtagacTTTG
TTGTTGtatatatcttttatagattTTATATTAAACCTGACCTCATTTTA
TTCTAGGAAAACTAAAGGAAACTAAGTTTGTGGGCACATATTTTAGTTAA
TAAACTTTTTGATTACAGCTGAAAATTTTATACTCAGGGCTCAAAACTGA
TGAGAAATGGTTTAAATGAAGAAAGCTAAGTCATGAATCAAATAAGGACT
TGAAATAGTACTAATTATATTAGATTGGGTCTGAAATACCTCAATTTTGC
AC Run BLAST on NCBI protein sequence of TCONS_00055732-protein >TCONS_00055732-protein ID=TCONS_00055732-protein|Name=TCONS_00055732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
SVGEGGKMANVESDKSDISSSFENDSDLDDASLSDDETESREDLIINEED
LSGGSDDATLVEIPNLVFVNEKNITVLVEQDSQQVPEHVFGKAIDLARKA
KFQCPYCGKLYIREFHYKKHLDLCDKKDVQARRTETDANNDDINSDLDDA
AEEEIVQRGISYLANAFEEAIVYPYFNMAEPGISVGKLARAVKSKLLSLK
QRNDDANESEEDQCDDACKAFRSYSRYLLDIFENQLVKDSKNIIKRTAST
FQKFYNYCTDEKEIKRWDDFLHDLGIAADTIHTQPLYNSIMNSFLRQCIS
ALKTFKLLEAKKKPSTMWQDT Run BLAST on NCBI transcript from alignment at scaffold_258:193532..196544- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055732 ID=TCONS_00055732|Name=TCONS_00055732|organism=Clytia hemisphaerica|type=transcript|length=3013bp|location=Sequence derived from alignment at scaffold_258:193532..196544- (Clytia hemisphaerica)
ATTCAGTTGGTGAAGGCGGCAAGATGGCAAACGTTGAAAGTGATAAAAGT
GATATTTCAAGCAGTTTTGAAAATGATTCGGATTTAGATGATGCAAGTTT
AAGTGATGACGAGACAGAGAGCAGAGAAGATCTAATAATAAATGAAGAAG
ATTTGAGTGGTGGCTCAGATGATGCGACACTGGTTGAGATTCCAAACCTT
GTTTTTGTTAACGAGAAAAACATCACTGTGCTTGTTGAACAAGACAGTCA
ACAAGTTCCTGAGCACGTGTTTGGAAAAGCCATAGATTTAGCAAGAAAAG
CAAAATTCCAATGCCCCTACTGTGGAAAACTCTACATCAGAGAATTCCAT
TATAAAAAGCACTTGGATCTGTGTGATAAAAAAGGTAAGTCTTAAAATTG
TTTAGCATGTTTTGATTGTGTTGGGAGCTAACAAGAAAGCACTGAATGGA
ACCAAACGTTTGAAAAGATAATTTTGTAATTAAAGAATTTTTGATTTGGT
AGAACTTTCAATTAGAAAAAATAATTTTTACAATTACATGCCTTTTCTCA
CTTGTGTTTCCATGTGTGATTATAATAGCGAGTTTATGTATGCGTGTTTT
TCAGCGACGGAGACGGTAATGTTCTAATTTGACTAGATCATGACCAGCTG
AGGACGACGGTAAATCAGCACTTTTACCGTCCTCGATTTTGCGGGGCGGA
ATTGCGGGTTTTTCCAAATCGCTTCAGTCACTCTACCGTCCTCGAAAGTG
CAAATACATAAACTCGGTAATATAACATGACAGCGCAGCTGTCTGAACAA
TAAGCTTTTTAAGATGATGCCGTGTCATAAAAAAAACTACCGGCACATAA
ATACAACTAGATTACTGGCACAAAAAGTATAAAGTACTGTATAGGCTTTT
TACCGTGAAGTGGGGTAACTTGCATCAGTGGAGGGAAGCTGCTTGCATAG
CCCTATCAAATGACTGACCAATTAAAGCAGCAAAATTTCAAACAAATGAA
CTACGCAGCTCTGCTCTATGGTTGGCGTCTCGCAGCTCTACTCTATCATT
TTTGTTTTGATTTTACTTTGTATTTTAATGACCAGACAGGTCATTCATTT
GAGGGCTATGCATGTTTGCCTCCACTGATGACTGATACATGTTACCCAAT
TTCACGGTACTCTCCCAAGACAGCAAGAAGGCTTTCCTTTGATACTCAAA
CTTTACTACTGTTTCAGACAGTAATGATTTCAATAACTCTATTTTTTAGA
TGTTCAAGCCAGGCGTACTGAGACCGATGCAAACAATGATGATATAAATA
GTGACTTAGATGATGCTGCTGAAGAGGGTATGTTGGATTTGCTGTTCTTA
ACAAAGTTATTATTGAAAAAAAATTAAATTTAACCAACCAGTGATCTAGA
GGAAATCTTTAATTTACAATCATTCAAATTTTCAAAATCATGTTGGAAAA
TTCAATTCATGTCAACTGATAAAAATGATCACAGTTTTAATTTTTTGCCA
CCTGTTTGAATTAGCAATCTATGCTTCTGACTTTTTCAAAATAATAATAC
AATAATTATTTTCTCGTTTTTAGAAATTGTTCAGAGGGGCATATCATATT
TGGCGAATGCGTTTGAGGAAGCGATTGTTTATCCCTACTTTAACATGGCT
GAACCTGGTATTTCTGTTGGAAAATTAGCACGAGCAGTGAAGTCCAAATT
ACTATCGTTAAAGCAAAGAAATGATGATGCAAATGAAAGTGAAGAAGACC
AATGTGACGATGCTTGTAAAGCGTTTAGAAGCTACAGTCGCTACCTTCTT
GACATTTTTGAGAATCAACTTGTCAAGGATTCAAAGAACATCATCAAAAG
AACTGCATCCACTTTTCAGAAATTTTACAACTATTGTACTGATGAGAAGG
AAATAAAACGCTGGGACGACTTCTTACATGATTTGGGTATAGCAGCAGAC
ACCATACATACCCAACCATTGTACAACTCCATAATGAACTCTTTTCTAAG
ACAGTGCATATCAGCTTTGAAGACATTCAAATTACTAGAAGCGAAGAAGA
AACCATCTACTATGTGGCAGGATACATAGTTTTTTCGTTGAAGAAAAATG
TTAAGCATAAGCTTTCTACAAACAGTAAAGCTATCATTGCGTTGCTAAAC
AGTTGGGGTGCAAAGGTGACAATAAATATGGTGATATTAACATTGAAGAA
TATACACGAGCTTGGTTGGAAAGAGTTAATCGCGGTGGACTGTTCCACGT
AAATAGTGAATTTTATGATTTTGTAGTTGCAATTGAAAAGTCAGCAAGAA
CAATTTTGAATATTTCATTGTTTTCTACGTACACTGGGCAAAATTTAAAG
GAGGTTCTCCTGCAAAAATTTGAAAATAATCTAGCCATTCAAAATGCCTG
GAAACAACTTGCAAGCAACTTTACAGCTGGAGATACTTTGAAAGACAAGC
TTTTTAAAAAACTGCTTGTGAAATGGATTAATGTGAGAGCATATGCTTTC
GTTAAAGTATGGATGCTTCAATATAAGTTAGACCAACGAAAAGCCGGAGA
GGAGGTTTCAGAACAAGCGGAGCCAGCTTTAAGGAAAGGTTTGAAGAAGA
AAGCAGTTAAGAGGAAAGTTGATAGAACTTTAATTTCACCAAAGAAAAAA
ACAACATCTACAAAGAAATTACCTAAAGACAAACCTTCAAAAGTCAGTGC
TGCAGCATCCAAGCTTCAAAAAGCAAAAAAAATTTTAAACAATAAAAAAA
AGTAGACTTTGTTGTTGTATATATCTTTTATAGATTTTATATTAAACCTG
ACCTCATTTTATTCTAGGAAAACTAAAGGAAACTAAGTTTGTGGGCACAT
ATTTTAGTTAATAAACTTTTTGATTACAGCTGAAAATTTTATACTCAGGG
CTCAAAACTGATGAGAAATGGTTTAAATGAAGAAAGCTAAGTCATGAATC
AAATAAGGACTTGAAATAGTACTAATTATATTAGATTGGGTCTGAAATAC
CTCAATTTTGCAC Coding sequence (CDS) from alignment at scaffold_258:193532..196544- >TCONS_00055732 ID=TCONS_00055732|Name=TCONS_00055732|organism=Clytia hemisphaerica|type=CDS|length=2898bp|location=Sequence derived from alignment at scaffold_258:193532..196544- (Clytia hemisphaerica)
AAATTGTTCAGAGGGGCATATCATATTTGGCGAATGCGTTTGAGGAAGCG
ATTGTTTATCCCTACTTTAACATGGCTGAACCTGGTATTTCTGTTGGAAA
ATTAGCACGAGCAGTGAAGTCCAAATTACTATCGTTAAAGCAAAGAAATG
ATGATGCAAATGAAAGTGAAGAAGACCAATGTGACGATGCTTGTAAAGCG
TTTAGAAGCTACAGTCGCTACCTTCTTGACATTTTTGAGAATCAACTTGT
CAAGGATTCAAAGAACATCATCAAAAGAACTGCATCCACTTTTCAGAAAT
TTTACAACTATTGTACTGATGAGAAGGAAATAAAACGCTGGGACGACTTC
TTACATGATTTGGGTATAGCAGCAGACACCATACATACCCAACCATTGTA
CAACTCCATAATGAACTCTTTTCTAAGACAGTGCATATCAGCTTTGAAGA
CATTCAAATTACTAGAAGCGAAGAAGAAACCATCTACTATGTGGCAGGAT
ACATAGATGTTCAAGCCAGGCGTACTGAGACCGATGCAAACAATGATGAT
ATAAATAGTGACTTAGATGATGCTGCTGAAGAGGTCAGTTGGTGAAGGCG
GCAAGATGGCAAACGTTGAAAGTGATAAAAGTGATATTTCAAGCAGTTTT
GAAAATGATTCGGATTTAGATGATGCAAGTTTAAGTGATGACGAGACAGA
GAGCAGAGAAGATCTAATAATAAATGAAGAAGATTTGAGTGGTGGCTCAG
ATGATGCGACACTGGTTGAGATTCCAAACCTTGTTTTTGTTAACGAGAAA
AACATCACTGTGCTTGTTGAACAAGACAGTCAACAAGTTCCTGAGCACGT
GTTTGGAAAAGCCATAGATTTAGCAAGAAAAGCAAAATTCCAATGCCCCT
ACTGTGGAAAACTCTACATCAGAGAATTCCATTATAAAAAGCACTTGGAT
CTGTGTGATAAAAAAGAAATTGTTCAGAGGGGCATATCATATTTGGCGAA
TGCGTTTGAGGAAGCGATTGTTTATCCCTACTTTAACATGGCTGAACCTG
GTATTTCTGTTGGAAAATTAGCACGAGCAGTGAAGTCCAAATTACTATCG
TTAAAGCAAAGAAATGATGATGCAAATGAAAGTGAAGAAGACCAATGTGA
CGATGCTTGTAAAGCGTTTAGAAGCTACAGTCGCTACCTTCTTGACATTT
TTGAGAATCAACTTGTCAAGGATTCAAAGAACATCATCAAAAGAACTGCA
TCCACTTTTCAGAAATTTTACAACTATTGTACTGATGAGAAGGAAATAAA
ACGCTGGGACGACTTCTTACATGATTTGGGTATAGCAGCAGACACCATAC
ATACCCAACCATTGTACAACTCCATAATGAACTCTTTTCTAAGACAGTGC
ATATCAGCTTTGAAGACATTCAAATTACTAGAAGCGAAGAAGAAACCATC
TACTATGTGGCAGGATACATAGATGTTCAAGCCAGGCGTACTGAGACCGA
TGCAAACAATGATGATATAAATAGTGACTTAGATGATGCTGCTGAAGAGG
TCAGTTGGTGAAGGCGGCAAGATGGCAAACGTTGAAAGTGATAAAAGTGA
TATTTCAAGCAGTTTTGAAAATGATTCGGATTTAGATGATGCAAGTTTAA
GTGATGACGAGACAGAGAGCAGAGAAGATCTAATAATAAATGAAGAAGAT
TTGAGTGGTGGCTCAGATGATGCGACACTGGTTGAGATTCCAAACCTTGT
TTTTGTTAACGAGAAAAACATCACTGTGCTTGTTGAACAAGACAGTCAAC
AAGTTCCTGAGCACGTGTTTGGAAAAGCCATAGATTTAGCAAGAAAAGCA
AAATTCCAATGCCCCTACTGTGGAAAACTCTACATCAGAGAATTCCATTA
TAAAAAGCACTTGGATCTGTGTGATAAAAAAGAAATTGTTCAGAGGGGCA
TATCATATTTGGCGAATGCGTTTGAGGAAGCGATTGTTTATCCCTACTTT
AACATGGCTGAACCTGGTATTTCTGTTGGAAAATTAGCACGAGCAGTGAA
GTCCAAATTACTATCGTTAAAGCAAAGAAATGATGATGCAAATGAAAGTG
AAGAAGACCAATGTGACGATGCTTGTAAAGCGTTTAGAAGCTACAGTCGC
TACCTTCTTGACATTTTTGAGAATCAACTTGTCAAGGATTCAAAGAACAT
CATCAAAAGAACTGCATCCACTTTTCAGAAATTTTACAACTATTGTACTG
ATGAGAAGGAAATAAAACGCTGGGACGACTTCTTACATGATTTGGGTATA
GCAGCAGACACCATACATACCCAACCATTGTACAACTCCATAATGAACTC
TTTTCTAAGACAGTGCATATCAGCTTTGAAGACATTCAAATTACTAGAAG
CGAAGAAGAAACCATCTACTATGTGGCAGGATACATAGATGTTCAAGCCA
GGCGTACTGAGACCGATGCAAACAATGATGATATAAATAGTGACTTAGAT
GATGCTGCTGAAGAGGTCAGTTGGTGAAGGCGGCAAGATGGCAAACGTTG
AAAGTGATAAAAGTGATATTTCAAGCAGTTTTGAAAATGATTCGGATTTA
GATGATGCAAGTTTAAGTGATGACGAGACAGAGAGCAGAGAAGATCTAAT
AATAAATGAAGAAGATTTGAGTGGTGGCTCAGATGATGCGACACTGGTTG
AGATTCCAAACCTTGTTTTTGTTAACGAGAAAAACATCACTGTGCTTGTT
GAACAAGACAGTCAACAAGTTCCTGAGCACGTGTTTGGAAAAGCCATAGA
TTTAGCAAGAAAAGCAAAATTCCAATGCCCCTACTGTGGAAAACTCTACA
TCAGAGAATTCCATTATAAAAAGCACTTGGATCTGTGTGATAAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055732-exon-scaffold_258-1575043694:196161..196544 | TCONS_00055732-exon-scaffold_258-1575043694:196161..196544 | Clytia hemisphaerica | exon |
| TCONS_00055732-exon-scaffold_258-1575043694:195218..195295 | TCONS_00055732-exon-scaffold_258-1575043694:195218..195295 | Clytia hemisphaerica | exon |
| TCONS_00055732-exon-scaffold_258-1575043694:193532..194971 | TCONS_00055732-exon-scaffold_258-1575043694:193532..194971 | Clytia hemisphaerica | exon |
| TCONS_00055732-exon-scaffold_258-1510915933:196161..196544 | TCONS_00055732-exon-scaffold_258-1510915933:196161..196544 | Clytia hemisphaerica | exon |
| TCONS_00055732-exon-scaffold_258-1510915933:195218..195295 | TCONS_00055732-exon-scaffold_258-1510915933:195218..195295 | Clytia hemisphaerica | exon |
| TCONS_00055732-exon-scaffold_258-1510915933:193532..194971 | TCONS_00055732-exon-scaffold_258-1510915933:193532..194971 | Clytia hemisphaerica | exon |
| TCONS_00055732-exon-scaffold_258-1491911889:196161..196544 | TCONS_00055732-exon-scaffold_258-1491911889:196161..196544 | Clytia hemisphaerica | exon |
| TCONS_00055732-exon-scaffold_258-1491911889:195218..195295 | TCONS_00055732-exon-scaffold_258-1491911889:195218..195295 | Clytia hemisphaerica | exon |
| TCONS_00055732-exon-scaffold_258-1491911889:193532..194971 | TCONS_00055732-exon-scaffold_258-1491911889:193532..194971 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_258 | supercontig | scaffold_258:193532..196544 - |
Blast
The following BLAST results are available for this feature:
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