TCONS_00055729 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055729
Unique NameTCONS_00055729
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055729 ID=TCONS_00055729|Name=TCONS_00055729|organism=Clytia hemisphaerica|type=transcript|length=1414bp
CAGCTTTTGTAGCTTATATCATCATAATGgcctcaaaaaaaaagtttaaa
tatgatataccaaaaataaaaaatatgtgtcAAATATGTTTTATTACATC
TTCGAAAAAATTCAACATAGAGAGACATATGGACACAGTTCATGCTTCAT
TAATGTCACAAGATGTGAAAAGTAATACTGATAATGCAAAAAGCAACCTT
GATATTTCCATCAATGATTATGATGGTGATTGCAATAATGATAAATTTAA
TGAAGAGCAAACAAATGACTCATTGGATGAACAATCTGATGTGTATGATG
CATCCCATTCACATTCATCCAAAGAAACTGATATATTGGAAAACAGTCAT
GACACAGATATGTTCCAAAACAAGGATGGAGAAGGATTTCATTTGAGCGC
AAAGGATTTattacaaaaaatgaaagaaagtatGCTAGCTTCAAAGGCAG
CAGACTCAGGTTAATTTTTTTGATCATATAACTCTCCTTTTTTTCACAGG
TCCCGTACTTTAACAACTTCTGTTTTGTAAATATATGTTACCTACAGACT
ACAGTGGGTAGAAGAAAATCTCGGCTGTAGGTTTTTCTGGGTTTTTAAAG
CGTTAAGATAACATTTTTATAAGGAAATTTTCCTACAATAATAATGGAAT
GCTAATTTTCTTTAATATTTAGATTCTGATATTTCTGATTCTACCTCTGA
TGTCACTACCAGTGAAAGTGAATCCAGTGATGATGATACTCATTCAGACA
GTgatctttcagattatgaagaTGATTGGCTCTTTGATGAGTCACCAGGA
CATTCAAGGCTAACAAAGAAAGATCACGCTGCTATAATACTTGGCCTTGC
TTTGAGGCATAACTTGTCCAACGAGTGTTTAAAGGATATTTTATTTGCTC
TTAAACTTCATTTGCCTGATTCTAATCGAAGTTTCTTGAATCAATACAAA
GTGAAAGCTAGTATTTCTGGGATGAGCAGTACACTCAAATTTATCGAATA
CTGTGAGAAATGCTTTGCATTATGGCCTGAAGATGAAAGTGTTTCTAAAT
GTCCAAATACTTCCTGCTCTGGCCAGCGATACAGAGGAAACCCATTGAAG
AAGGTCAAAAAGAGTTTTATTTTGACATCCTGCTTATTAAAGGAACAACT
TAAAGCTATTCTTGATAGAGATGgaatgtgggaaaaagttcttAATGTAA
TAAAATCAAGGGAAAGTAACAATGGGGACTGTATAACAGATGTGACTGAT
GGAAAAAGATATAGGGAGCTCTGTCAGTCTGGTGGTGTACTTCATGGAAC
TGAAAATCTAACTATAATCTTTAATACTGATGGTGTTGCCTTGTACAAAT
CATCGAGAATAGAAATATGGCCTGTGTATGTTGCCATAAATGAAATACCA
GCCAAAGAAAGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_258:270230..272216+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055729 ID=TCONS_00055729|Name=TCONS_00055729|organism=Clytia hemisphaerica|type=transcript|length=1987bp|location=Sequence derived from alignment at scaffold_258:270230..272216+ (Clytia hemisphaerica)
CAGCTTTTGTAGCTTATATCATCATAATGgcctcaaaaaaaaagtttaaa
tatgatataccaaaaataaaaaatatgtgtcAAATATGTTTTATTACATC
TTCGAAAAAATTCAACATAGAGAGACATATGGACACAGTTCATGCTTCAT
TAATGTCACAAGATGTGAAAAGTAATACTGATAATGCAAAAAGCAACCTT
GATATTTCCATCAATGATTATGATGGTGATTGCAATAATGATAAATTTAA
TGAAGAGCAAACAAATGACTCATTGGATGAACAATCTGATGTGTATGATG
CATCCCATTCACATTCATCCAAAGAAACTGATATATTGGAAAACAGTCAT
GACACAGATATGTTCCAAAACAAGGTCATTATTATAAAAACTCTACACTG
ATTCCTTACAACCTCTAAAGAATTGTGTGTACTTTCTATGATAATTTAAA
CCTTTACAGCCATTTTTCTGAATCTCTTTGTTTTTGTGTTAGGATGGAGA
AGGATTTCATTTGAGCGCAAAGGATTTattacaaaaaatgaaagaaagta
tGCTAGCTTCAAAGGCAGCAGACTCAGGTTAATTTTTTTGATCATATAAC
TCTCCTTTTTTTCACAGGTCCCGTACTTTAACAACTTCTGTTTTGTAAAT
ATATGTTACCTACAGACTACAGTGGGTAGAAGAAAATCTCGGCTGTAGGT
TTTTCTGGGTTTTTAAAGCGTTAAGATAACATTTTTATAAGGAAATTTTC
CTACAATAATAATGGAATGCTAATTTTCTTTAATATTTAGATTCTGATAT
TTCTGATTCTACCTCTGATGTCACTACCAGTGAAAGTGAATCCAGTGATG
ATGATACTCATTCAGACAGTgatctttcagattatgaagaTGATTGGCTC
TTTGATGAGTCACCAGGACATTCAAGGCTAACAAAGAAAGATCACGCTGC
TATAATACTTGGCCTTGCTTTGAGGCATAACTTGTCCAACGAGTGTTTAA
AGGATATTTTATTTGCTCTTAAACTTCATTTGCCTGATTCTAATCGAAGT
TTCTTGAATCAATACAAAGTGAAAGCTAGTATTTCTGGGATGAGCAGTAC
ACTCAAATTTATCGAATACTGTGAGAAATGCTTTGCATTATGGCCTGAAG
ATGAAAGTGTTTCTAAATGTCCAAATACTTCCTGCTCTGGGTAGGTGtca
aagaactttttgaaaaacagtttTATTTACATTAAATCATGTCTGGTTTC
TCTTTTGTTTAATAAATGCAAGCtttgaattcaaacattttTACAATATA
GTTTCATCTTTTTAGCCAGCGATACAGAGGAAACCCATTGAAGAAGGTCA
AAAAGAGTTTTATTTTGACATCCTGCTTATTAAAGGAACAACTTAAAGCT
ATTCTTGATAGTAAGTTTAGACTGGCAAGCAGAAGCTTTTTtaaatacat
cagaaaaatgaagatgttcTATGGTACTAGCTAGACAATTGAATTGAact
atattttattattttttcatgcATACATAATTTAATCCTACTCTAACTCA
TTACTAACCTTAcgtcattaaactcactctgtgTGTTGTTCTAATCAATC
TTCAATATTGTTGATTTCAAGGAGATGgaatgtgggaaaaagttcttAAT
GTAATAAAATCAAGGGAAAGTAACAATGGGGACTGTATAACAGATGTGAC
TGATGGAAAAAGGTATAAAAGCtgtttctttttatcattttatccaAATA
ATAGCTACAAAGTGgaagtgagaaaaaaaaaatagacgTTTTGACCTAAA
TGTCATTaaataaatttgtgtgtttttttagATATAGGGAGCTCTGTCAG
TCTGGTGGTGTACTTCATGGAACTGAAAATCTAACTATAATCTTTAATAC
TGATGGTGTTGCCTTGTACAAATCATCGAGAATAGAAATATGGCCTGTGT
ATGTTGCCATAAATGAAATACCAGCCAAAGAAAGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035076XLOC_035076Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055729-exon-scaffold_258-1491911889:270230..270603TCONS_00055729-exon-scaffold_258-1491911889:270230..270603Clytia hemisphaericaexon
TCONS_00055729-exon-scaffold_258-1510915933:270230..270603TCONS_00055729-exon-scaffold_258-1510915933:270230..270603Clytia hemisphaericaexon
TCONS_00055729-exon-scaffold_258-1575043694:270230..270603TCONS_00055729-exon-scaffold_258-1575043694:270230..270603Clytia hemisphaericaexon
TCONS_00055729-exon-scaffold_258-1491911889:270722..271419TCONS_00055729-exon-scaffold_258-1491911889:270722..271419Clytia hemisphaericaexon
TCONS_00055729-exon-scaffold_258-1510915933:270722..271419TCONS_00055729-exon-scaffold_258-1510915933:270722..271419Clytia hemisphaericaexon
TCONS_00055729-exon-scaffold_258-1575043694:270722..271419TCONS_00055729-exon-scaffold_258-1575043694:270722..271419Clytia hemisphaericaexon
TCONS_00055729-exon-scaffold_258-1491911889:271545..271639TCONS_00055729-exon-scaffold_258-1491911889:271545..271639Clytia hemisphaericaexon
TCONS_00055729-exon-scaffold_258-1510915933:271545..271639TCONS_00055729-exon-scaffold_258-1510915933:271545..271639Clytia hemisphaericaexon
TCONS_00055729-exon-scaffold_258-1575043694:271545..271639TCONS_00055729-exon-scaffold_258-1575043694:271545..271639Clytia hemisphaericaexon
TCONS_00055729-exon-scaffold_258-1491911889:271851..271941TCONS_00055729-exon-scaffold_258-1491911889:271851..271941Clytia hemisphaericaexon
TCONS_00055729-exon-scaffold_258-1510915933:271851..271941TCONS_00055729-exon-scaffold_258-1510915933:271851..271941Clytia hemisphaericaexon
TCONS_00055729-exon-scaffold_258-1575043694:271851..271941TCONS_00055729-exon-scaffold_258-1575043694:271851..271941Clytia hemisphaericaexon
TCONS_00055729-exon-scaffold_258-1491911889:272061..272216TCONS_00055729-exon-scaffold_258-1491911889:272061..272216Clytia hemisphaericaexon
TCONS_00055729-exon-scaffold_258-1510915933:272061..272216TCONS_00055729-exon-scaffold_258-1510915933:272061..272216Clytia hemisphaericaexon
TCONS_00055729-exon-scaffold_258-1575043694:272061..272216TCONS_00055729-exon-scaffold_258-1575043694:272061..272216Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:270230..272216 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.545403	0.966675	0.423461	0.275975	0.856331	1.21323	1.71201	1.72338	1.46772	2.22122	1.52566	1.67559	1.64831	2.05832	0.714748	0.564671	1.18742	1.14488	0.799534	1.29178	1.75476	0.979128	0.447752	0.261217	0.835955	1.4682	0.711816	0.166173	1.90074	0.689231
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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