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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055729 ID=TCONS_00055729|Name=TCONS_00055729|organism=Clytia hemisphaerica|type=transcript|length=1414bp CAGCTTTTGTAGCTTATATCATCATAATGgcctcaaaaaaaaagtttaaa tatgatataccaaaaataaaaaatatgtgtcAAATATGTTTTATTACATC TTCGAAAAAATTCAACATAGAGAGACATATGGACACAGTTCATGCTTCAT TAATGTCACAAGATGTGAAAAGTAATACTGATAATGCAAAAAGCAACCTT GATATTTCCATCAATGATTATGATGGTGATTGCAATAATGATAAATTTAA TGAAGAGCAAACAAATGACTCATTGGATGAACAATCTGATGTGTATGATG CATCCCATTCACATTCATCCAAAGAAACTGATATATTGGAAAACAGTCAT GACACAGATATGTTCCAAAACAAGGATGGAGAAGGATTTCATTTGAGCGC AAAGGATTTattacaaaaaatgaaagaaagtatGCTAGCTTCAAAGGCAG CAGACTCAGGTTAATTTTTTTGATCATATAACTCTCCTTTTTTTCACAGG TCCCGTACTTTAACAACTTCTGTTTTGTAAATATATGTTACCTACAGACT ACAGTGGGTAGAAGAAAATCTCGGCTGTAGGTTTTTCTGGGTTTTTAAAG CGTTAAGATAACATTTTTATAAGGAAATTTTCCTACAATAATAATGGAAT GCTAATTTTCTTTAATATTTAGATTCTGATATTTCTGATTCTACCTCTGA TGTCACTACCAGTGAAAGTGAATCCAGTGATGATGATACTCATTCAGACA GTgatctttcagattatgaagaTGATTGGCTCTTTGATGAGTCACCAGGA CATTCAAGGCTAACAAAGAAAGATCACGCTGCTATAATACTTGGCCTTGC TTTGAGGCATAACTTGTCCAACGAGTGTTTAAAGGATATTTTATTTGCTC TTAAACTTCATTTGCCTGATTCTAATCGAAGTTTCTTGAATCAATACAAA GTGAAAGCTAGTATTTCTGGGATGAGCAGTACACTCAAATTTATCGAATA CTGTGAGAAATGCTTTGCATTATGGCCTGAAGATGAAAGTGTTTCTAAAT GTCCAAATACTTCCTGCTCTGGCCAGCGATACAGAGGAAACCCATTGAAG AAGGTCAAAAAGAGTTTTATTTTGACATCCTGCTTATTAAAGGAACAACT TAAAGCTATTCTTGATAGAGATGgaatgtgggaaaaagttcttAATGTAA TAAAATCAAGGGAAAGTAACAATGGGGACTGTATAACAGATGTGACTGAT GGAAAAAGATATAGGGAGCTCTGTCAGTCTGGTGGTGTACTTCATGGAAC TGAAAATCTAACTATAATCTTTAATACTGATGGTGTTGCCTTGTACAAAT CATCGAGAATAGAAATATGGCCTGTGTATGTTGCCATAAATGAAATACCA GCCAAAGAAAGGTG Run BLAST on NCBI transcript from alignment at scaffold_258:270230..272216+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055729 ID=TCONS_00055729|Name=TCONS_00055729|organism=Clytia hemisphaerica|type=transcript|length=1987bp|location=Sequence derived from alignment at scaffold_258:270230..272216+ (Clytia hemisphaerica) CAGCTTTTGTAGCTTATATCATCATAATGgcctcaaaaaaaaagtttaaa
tatgatataccaaaaataaaaaatatgtgtcAAATATGTTTTATTACATC
TTCGAAAAAATTCAACATAGAGAGACATATGGACACAGTTCATGCTTCAT
TAATGTCACAAGATGTGAAAAGTAATACTGATAATGCAAAAAGCAACCTT
GATATTTCCATCAATGATTATGATGGTGATTGCAATAATGATAAATTTAA
TGAAGAGCAAACAAATGACTCATTGGATGAACAATCTGATGTGTATGATG
CATCCCATTCACATTCATCCAAAGAAACTGATATATTGGAAAACAGTCAT
GACACAGATATGTTCCAAAACAAGGTCATTATTATAAAAACTCTACACTG
ATTCCTTACAACCTCTAAAGAATTGTGTGTACTTTCTATGATAATTTAAA
CCTTTACAGCCATTTTTCTGAATCTCTTTGTTTTTGTGTTAGGATGGAGA
AGGATTTCATTTGAGCGCAAAGGATTTattacaaaaaatgaaagaaagta
tGCTAGCTTCAAAGGCAGCAGACTCAGGTTAATTTTTTTGATCATATAAC
TCTCCTTTTTTTCACAGGTCCCGTACTTTAACAACTTCTGTTTTGTAAAT
ATATGTTACCTACAGACTACAGTGGGTAGAAGAAAATCTCGGCTGTAGGT
TTTTCTGGGTTTTTAAAGCGTTAAGATAACATTTTTATAAGGAAATTTTC
CTACAATAATAATGGAATGCTAATTTTCTTTAATATTTAGATTCTGATAT
TTCTGATTCTACCTCTGATGTCACTACCAGTGAAAGTGAATCCAGTGATG
ATGATACTCATTCAGACAGTgatctttcagattatgaagaTGATTGGCTC
TTTGATGAGTCACCAGGACATTCAAGGCTAACAAAGAAAGATCACGCTGC
TATAATACTTGGCCTTGCTTTGAGGCATAACTTGTCCAACGAGTGTTTAA
AGGATATTTTATTTGCTCTTAAACTTCATTTGCCTGATTCTAATCGAAGT
TTCTTGAATCAATACAAAGTGAAAGCTAGTATTTCTGGGATGAGCAGTAC
ACTCAAATTTATCGAATACTGTGAGAAATGCTTTGCATTATGGCCTGAAG
ATGAAAGTGTTTCTAAATGTCCAAATACTTCCTGCTCTGGGTAGGTGtca
aagaactttttgaaaaacagtttTATTTACATTAAATCATGTCTGGTTTC
TCTTTTGTTTAATAAATGCAAGCtttgaattcaaacattttTACAATATA
GTTTCATCTTTTTAGCCAGCGATACAGAGGAAACCCATTGAAGAAGGTCA
AAAAGAGTTTTATTTTGACATCCTGCTTATTAAAGGAACAACTTAAAGCT
ATTCTTGATAGTAAGTTTAGACTGGCAAGCAGAAGCTTTTTtaaatacat
cagaaaaatgaagatgttcTATGGTACTAGCTAGACAATTGAATTGAact
atattttattattttttcatgcATACATAATTTAATCCTACTCTAACTCA
TTACTAACCTTAcgtcattaaactcactctgtgTGTTGTTCTAATCAATC
TTCAATATTGTTGATTTCAAGGAGATGgaatgtgggaaaaagttcttAAT
GTAATAAAATCAAGGGAAAGTAACAATGGGGACTGTATAACAGATGTGAC
TGATGGAAAAAGGTATAAAAGCtgtttctttttatcattttatccaAATA
ATAGCTACAAAGTGgaagtgagaaaaaaaaaatagacgTTTTGACCTAAA
TGTCATTaaataaatttgtgtgtttttttagATATAGGGAGCTCTGTCAG
TCTGGTGGTGTACTTCATGGAACTGAAAATCTAACTATAATCTTTAATAC
TGATGGTGTTGCCTTGTACAAATCATCGAGAATAGAAATATGGCCTGTGT
ATGTTGCCATAAATGAAATACCAGCCAAAGAAAGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00055729-exon-scaffold_258-1491911889:270230..270603 | TCONS_00055729-exon-scaffold_258-1491911889:270230..270603 | Clytia hemisphaerica | exon |
TCONS_00055729-exon-scaffold_258-1510915933:270230..270603 | TCONS_00055729-exon-scaffold_258-1510915933:270230..270603 | Clytia hemisphaerica | exon |
TCONS_00055729-exon-scaffold_258-1575043694:270230..270603 | TCONS_00055729-exon-scaffold_258-1575043694:270230..270603 | Clytia hemisphaerica | exon |
TCONS_00055729-exon-scaffold_258-1491911889:270722..271419 | TCONS_00055729-exon-scaffold_258-1491911889:270722..271419 | Clytia hemisphaerica | exon |
TCONS_00055729-exon-scaffold_258-1510915933:270722..271419 | TCONS_00055729-exon-scaffold_258-1510915933:270722..271419 | Clytia hemisphaerica | exon |
TCONS_00055729-exon-scaffold_258-1575043694:270722..271419 | TCONS_00055729-exon-scaffold_258-1575043694:270722..271419 | Clytia hemisphaerica | exon |
TCONS_00055729-exon-scaffold_258-1491911889:271545..271639 | TCONS_00055729-exon-scaffold_258-1491911889:271545..271639 | Clytia hemisphaerica | exon |
TCONS_00055729-exon-scaffold_258-1510915933:271545..271639 | TCONS_00055729-exon-scaffold_258-1510915933:271545..271639 | Clytia hemisphaerica | exon |
TCONS_00055729-exon-scaffold_258-1575043694:271545..271639 | TCONS_00055729-exon-scaffold_258-1575043694:271545..271639 | Clytia hemisphaerica | exon |
TCONS_00055729-exon-scaffold_258-1491911889:271851..271941 | TCONS_00055729-exon-scaffold_258-1491911889:271851..271941 | Clytia hemisphaerica | exon |
TCONS_00055729-exon-scaffold_258-1510915933:271851..271941 | TCONS_00055729-exon-scaffold_258-1510915933:271851..271941 | Clytia hemisphaerica | exon |
TCONS_00055729-exon-scaffold_258-1575043694:271851..271941 | TCONS_00055729-exon-scaffold_258-1575043694:271851..271941 | Clytia hemisphaerica | exon |
TCONS_00055729-exon-scaffold_258-1491911889:272061..272216 | TCONS_00055729-exon-scaffold_258-1491911889:272061..272216 | Clytia hemisphaerica | exon |
TCONS_00055729-exon-scaffold_258-1510915933:272061..272216 | TCONS_00055729-exon-scaffold_258-1510915933:272061..272216 | Clytia hemisphaerica | exon |
TCONS_00055729-exon-scaffold_258-1575043694:272061..272216 | TCONS_00055729-exon-scaffold_258-1575043694:272061..272216 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_258 | supercontig | scaffold_258:270230..272216 + |
Blast
The following BLAST results are available for this feature:
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