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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055724 ID=TCONS_00055724|Name=TCONS_00055724|organism=Clytia hemisphaerica|type=transcript|length=1562bp
ACTGGTAATGATGATTTAGAAAACTTGATTGCCTCACGGAAAGAGGGCAA
GTCTTCCCATGGTAGCACAGTGCTTGAAAATGTGCAGTTGGAAgcatttt
cgaaaattgaagctACCATCAGGTATACCAATTGTGATATTTTGTTAAGC
ACAGAGGCTGGTCGATGTGATAACTGCCAGGTCAACAGAAAGTCCCTCCA
AACCATGGAGAGGCGTAAATCACTTGAGGATGATCGGCCTAAGGCAAAGA
AGCCTCATAGTTCAATGACTAAAGAACAATTGAAAAGTAGGCTGAAAACT
GTTGCCAAAGAAAATAAAGAGCTGaaacgaaaacaaaaaagattggaGAA
GAAGATCGAAAAACTTGTCCGAGCAAAGGGGGTGAAAATCAAGGACAAGG
GAACACAGCAAGTTGTTGATGATGTTTTGAAGGGGGAATGCCCTTTTGAT
GAAAAATCACCCATGTTTCTTCTATGGGAGCAACAGAAGAAGGCTGCAAA
GTTGAAGAAGCTAACATCCATGAGGTGGCATCCAGTCATTATCCGTTGGT
GCTTGAGTATCAATTTACGAAGTCCGGGCACTTACGAACAGCTCAGAGCA
ACCGGCTTTCTCCAACTACCTCATCGCTCAACACTACAACAGTACACAAG
CTTTACATCAATTGGTACTTCTTTCAACCCAGATGTAATAGAGAAGTACT
GTAATGAACTCAAAATTTCAACTCTGCCAACACATGAACGCGTATGTTCT
ATAATGtttgatgaaatgaaaattaaatccGGCCTTGTATTCAGCAGATC
AACCGGGACAATAATTGGGTTCACTGAGCTTGGGCGAGTTTCTGATGAAA
TTGACAGCTTGGAAAGGTCATTAGAAAAGGACAGAAAGAAGATCAGGCCA
CTGGCCACACATGTTCTGGCAATTATGGTCAGAggattttttaatcattt
caaCTTCCCCATCGGGTTTTATGCCACCCGCTCAGCCAGTGCTGAGCAGC
TTTTTGCCATCATATGGGAAGCTGTTGGTGTTATGGAAATGGTTGGTTTT
AATGTTTACGCCTTTGTTTGTGATGGAGCATCTGCAACCGCAAATTCTTT
GAGATGCATAAATTAGAAGATGGCACCAATGTTTCCCCTGATGGTGTAGT
CTATTGGGCCCACAATCGTTATGCTCCTGGTCGTAAAATATACTTTTATA
GTGACGTGCCACATTTACTGAAGACACTCAGGAACAATCTTGAAAACTCC
GGCtgtaacaaaaaaaacaaggaaGTTGACTGtaagaataatagttttta
taaGCAGGGGCTACTTTAGAGAGGACTTTCATATTGTCAAGCTCGAATAA
TGTAATCTTTTAGTAACATGATTTGGTGTATTTAAGTAGTAAAATCTTTC
CTCTTTGTCCTATTCATCTTCTGAGTAATCAAGTTTTATTTGAGAttcta
gattttttaaatattttattaatttGCTAAATAATTTTACAATACAAGGG
CTCAAGTTAATATATGAGATTTAAGTAAAATGTAcactactcttaggtgc
caaataaacgcc Run BLAST on NCBI protein sequence of TCONS_00055724-protein >TCONS_00055724-protein ID=TCONS_00055724-protein|Name=TCONS_00055724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
TGNDDLENLIASRKEGKSSHGSTVLENVQLEAFSKIEATIRYTNCDILLS
TEAGRCDNCQVNRKSLQTMERRKSLEDDRPKAKKPHSSMTKEQLKSRLKT
VAKENKELKRKQKRLEKKIEKLVRAKGVKIKDKGTQQVVDDVLKGECPFD
EKSPMFLLWEQQKKAAKLKKLTSMRWHPVIIRWCLSINLRSPGTYEQLRA
TGFLQLPHRSTLQQYTSFTSIGTSFNPDVIEKYCNELKISTLPTHERVCS
IMFDEMKIKSGLVFSRSTGTIIGFTELGRVSDEIDSLERSLEKDRKKIRP
LATHVLAIMVRGFFNHFNFPIGFYATRSASAEQLFAIIWEAVGVMEMVGF
NVYAFVCDGASATANSLRCIN Run BLAST on NCBI transcript from alignment at scaffold_258:187740..189645+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055724 ID=TCONS_00055724|Name=TCONS_00055724|organism=Clytia hemisphaerica|type=transcript|length=1906bp|location=Sequence derived from alignment at scaffold_258:187740..189645+ (Clytia hemisphaerica)
ACTGGTAATGATGATTTAGAAAACTTGATTGCCTCACGGAAAGAGGGCAA
GTCTTCCCATGGTAGCACAGTGCTTGAAAATGTGCAGTTGGAAgcatttt
cgaaaattgaagctACCATCAGGTATACCAATTGTGATATTTTGTTAAGC
ACAGAGGCTGGTCGATGTGATAACTGCCAGGTCAACAGAAAGTCCCTCCA
AACCATGGAGAGGCGTAAATCACTTGAGGATGATCGGCCTAAGGCAAAGA
AGCCTCATAGTTCAATGACTAAAGAACAATTGAAAAGTAGGCTGAAAACT
GTTGCCAAAGAAAATAAAGAGCTGaaacgaaaacaaaaaagattggaGAA
GAAGATCGAAAAACTTGTCCGAGCAAAGGGGGTGAAAATCAAGGACAAGG
GAACACAGCAAGTTGTTGATGATGTTTTGAAGGGGGAATGCCCTTTTGAT
GAAAAATCACCCATGTTTCTTCTATGGGAGCAACAGAAGAAGGCTGCAAA
GTTGAAGAAGCTAACATCCATGAGGTGGCATCCAGTCATTATCCGTTGGT
GCTTGAGTATCAATTTACGAAGTCCGGGTAAGTAAACACAATATTTGTAC
ATTAAAAACTTGGAAACGTATGCTTCAGACTATTGGGATGATTATTTTCT
TGCTAATAAAGTTATCATACCCATTGTTAATTTCCGTTgtcaacaaaaaa
atctttcagagAGAactagttttattttatttttattctcttctaaactt
ttttgaaaataaagagtCAAAATTTACTCTTTTTGTATCAGGTTGATTTC
ATTGCAATATCATCCAATAACTTTTTAGAATAAATTTTCTGTAAGGTGCA
AAGTTCATGAATTTATCTAACTTAATCAATCTATGATTGTACGATTGTTT
TATGCCTCATCTTTTTTCTAGGCACTTACGAACAGCTCAGAGCAACCGGC
TTTCTCCAACTACCTCATCGCTCAACACTACAACAGTACACAAGCTTTAC
ATCAATTGGTACTTCTTTCAACCCAGATGTAATAGAGAAGTACTGTAATG
AACTCAAAATTTCAACTCTGCCAACACATGAACGCGTATGTTCTATAATG
tttgatgaaatgaaaattaaatccGGCCTTGTATTCAGCAGATCAACCGG
GACAATAATTGGGTTCACTGAGCTTGGGCGAGTTTCTGATGAAATTGACA
GCTTGGAAAGGTCATTAGAAAAGGACAGAAAGAAGATCAGGCCACTGGCC
ACACATGTTCTGGCAATTATGGTCAGAggattttttaatcatttcaaCTT
CCCCATCGGGTTTTATGCCACCCGCTCAGCCAGTGCTGAGCAGCTTTTTG
CCATCATATGGGAAGCTGTTGGTGTTATGGAAATGGTTGGTTTTAATGTT
TACGCCTTTGTTTGTGATGGAGCATCTGCAACCGCAAATTCTTTGAGATG
CATAAATTAGAAGATGGCACCAATGTTTCCCCTGATGGTGTAGTCTATTG
GGCCCACAATCGTTATGCTCCTGGTCGTAAAATATACTTTTATAGTGACG
TGCCACATTTACTGAAGACACTCAGGAACAATCTTGAAAACTCCGGCtgt
aacaaaaaaaacaaggaaGTTGACTGtaagaataatagtttttataaGCA
GGGGCTACTTTAGAGAGGACTTTCATATTGTCAAGCTCGAATAATGTAAT
CTTTTAGTAACATGATTTGGTGTATTTAAGTAGTAAAATCTTTCCTCTTT
GTCCTATTCATCTTCTGAGTAATCAAGTTTTATTTGAGAttctagatttt
ttaaatattttattaatttGCTAAATAATTTTACAATACAAGGGCTCAAG
TTAATATATGAGATTTAAGTAAAATGTAcactactcttaggtgccaaata
aacgcc Coding sequence (CDS) from alignment at scaffold_258:187740..189645+ >TCONS_00055724 ID=TCONS_00055724|Name=TCONS_00055724|organism=Clytia hemisphaerica|type=CDS|length=2232bp|location=Sequence derived from alignment at scaffold_258:187740..189645+ (Clytia hemisphaerica)
ACTGGTAATGATGATTTAGAAAACTTGATTGCCTCACGGAAAGAGGGCAA
GTCTTCCCATGGTAGCACAGTGCTTGAAAATGTGCAGTTGGAAgcatttt
cgaaaattgaagctACCATCAGGTATACCAATTGTGATATTTTGTTAAGC
ACAGAGGCTGGTCGATGTGATAACTGCCAGGTCAACAGAAAGTCCCTCCA
AACCATGGAGAGGCGTAAATCACTTGAGGATGATCGGCCTAAGGCAAAGA
AGCCTCATAGTTCAATGACTAAAGAACAATTGAAAAGTAGGCTGAAAACT
GTTGCCAAAGAAAATAAAGAGCTGaaacgaaaacaaaaaagattggaGAA
GAAGATCGAAAAACTTGTCCGAGCAAAGGGGGTGAAAATCAAGGACAAGG
GAACACAGCAAGTTGTTGATGATGTTTTGAAGGGGGAATGCCCTTTTGAT
GAAAAATCACCCATGTTTCTTCTATGGGAGCAACAGAAGAAGGCTGCAAA
GTTGAAGAAGCTAACATCCATGAGGTGGCATCCAGTCATTATCCGTTGGT
GCTTGAGTATCAATTTACGAAGTCCGGGCACTTACGAACAGCTCAGAGCA
ACCGGCTTTCTCCAACTACCTCATCGCTCAACACTACAACAGTACACAAG
CTTTACATCAATTGGTACTTCTTTCAACCCAGATGTAATAGAGAAGTACT
GTAATGAACTCAAAATTTCAACTCTGCCAACACATGAACGCGTATGTTCT
ATAATGtttgatgaaatgaaaattaaatccGGCCTTGTATTCAGCAGATC
AACCGGGACAATAATTGGGTTCACTGAGCTTGGGCGAGTTTCTGATGAAA
TTGACAGCTTGGAAAGGTCATTAGAAAAGGACAGAAAGAAGATCAGGCCA
CTGGCCACACATGTTCTGGCAATTATGGTCAGAggattttttaatcattt
caaCTTCCCCATCGGGTTTTATGCCACCCGCTCAGCCAGTGCTGAGCAGC
TTTTTGCCATCATATGGGAAGCTGTTGGTGTTATGGAAATGGTTGGTTTT
AATGTTTACGCCTTTGTTTGTGATGGAGCATCTGCAACCGCAAATTCTTT
GAGATGCATAAATTAGACTGGTAATGATGATTTAGAAAACTTGATTGCCT
CACGGAAAGAGGGCAAGTCTTCCCATGGTAGCACAGTGCTTGAAAATGTG
CAGTTGGAAgcattttcgaaaattgaagctACCATCAGGTATACCAATTG
TGATATTTTGTTAAGCACAGAGGCTGGTCGATGTGATAACTGCCAGGTCA
ACAGAAAGTCCCTCCAAACCATGGAGAGGCGTAAATCACTTGAGGATGAT
CGGCCTAAGGCAAAGAAGCCTCATAGTTCAATGACTAAAGAACAATTGAA
AAGTAGGCTGAAAACTGTTGCCAAAGAAAATAAAGAGCTGaaacgaaaac
aaaaaagattggaGAAGAAGATCGAAAAACTTGTCCGAGCAAAGGGGGTG
AAAATCAAGGACAAGGGAACACAGCAAGTTGTTGATGATGTTTTGAAGGG
GGAATGCCCTTTTGATGAAAAATCACCCATGTTTCTTCTATGGGAGCAAC
AGAAGAAGGCTGCAAAGTTGAAGAAGCTAACATCCATGAGGTGGCATCCA
GTCATTATCCGTTGGTGCTTGAGTATCAATTTACGAAGTCCGGGCACTTA
CGAACAGCTCAGAGCAACCGGCTTTCTCCAACTACCTCATCGCTCAACAC
TACAACAGTACACAAGCTTTACATCAATTGGTACTTCTTTCAACCCAGAT
GTAATAGAGAAGTACTGTAATGAACTCAAAATTTCAACTCTGCCAACACA
TGAACGCGTATGTTCTATAATGtttgatgaaatgaaaattaaatccGGCC
TTGTATTCAGCAGATCAACCGGGACAATAATTGGGTTCACTGAGCTTGGG
CGAGTTTCTGATGAAATTGACAGCTTGGAAAGGTCATTAGAAAAGGACAG
AAAGAAGATCAGGCCACTGGCCACACATGTTCTGGCAATTATGGTCAGAg
gattttttaatcatttcaaCTTCCCCATCGGGTTTTATGCCACCCGCTCA
GCCAGTGCTGAGCAGCTTTTTGCCATCATATGGGAAGCTGTTGGTGTTAT
GGAAATGGTTGGTTTTAATGTTTACGCCTTTGTTTGTGATGGAGCATCTG
CAACCGCAAATTCTTTGAGATGCATAAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055724-exon-scaffold_258-1491911889:187740..188316 | TCONS_00055724-exon-scaffold_258-1491911889:187740..188316 | Clytia hemisphaerica | exon |
| TCONS_00055724-exon-scaffold_258-1510915933:187740..188316 | TCONS_00055724-exon-scaffold_258-1510915933:187740..188316 | Clytia hemisphaerica | exon |
| TCONS_00055724-exon-scaffold_258-1575043694:187740..188316 | TCONS_00055724-exon-scaffold_258-1575043694:187740..188316 | Clytia hemisphaerica | exon |
| TCONS_00055724-exon-scaffold_258-1491911889:188661..189645 | TCONS_00055724-exon-scaffold_258-1491911889:188661..189645 | Clytia hemisphaerica | exon |
| TCONS_00055724-exon-scaffold_258-1510915933:188661..189645 | TCONS_00055724-exon-scaffold_258-1510915933:188661..189645 | Clytia hemisphaerica | exon |
| TCONS_00055724-exon-scaffold_258-1575043694:188661..189645 | TCONS_00055724-exon-scaffold_258-1575043694:188661..189645 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_258 | supercontig | scaffold_258:187740..189645 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021896 | Transposase_37 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004803 | transposase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006313 | transposition, DNA-mediated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006313 |
transposition, DNA-mediated |
| molecular_function |
GO:0004803 |
transposase activity |
Blast
The following BLAST results are available for this feature:
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