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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055713 ID=TCONS_00055713|Name=TCONS_00055713|organism=Clytia hemisphaerica|type=transcript|length=954bp
CAAGAAAAGTGGTACCTGATTTAGtaatcgaagaaaattttgagaatgtt
CTTTTGGGAAATTTGAGTTTACAAGCTGTCATTTTCCATCACGGTGAAAC
CGCAAATAGTGGTCACTATACATCAGCTGTCAAATATAAAGATACGTGGT
ATTCAATTAATGATGATAAAGTTTTTTGTATCAAAAATGCAAACTTCAAC
TGTAAAGTTAATGATGAGACTGTTCCatatttattaatttataaaaaatc
aaaaccacaaaaaatttcaccatctttACCAATTCATAATAGCCCTGTAc
gcaattttaaatttgataataaCATTTCTAAAGTCGCTTTTTGCTCAAAC
TCAAAAACCACCAAAAGTATGGGTGCTAcctctttcacaaaaaaaatgga
CAGTGTTGATATGCATTTGCAAGAGGAATGTGACATTTACAAAGCTACTT
TTTTATCACCTCAAAAGAATGAAAGCACCAGCGCAATTAGGAAACGAAGA
AAAATTATGCGAAgtgaaataaaagtaaaaaagttgtGTAAATTTCCaat
gaaactgaaaaagaacTTGCTTGATAGACCAGTCATAAAAATAACGTTCC
CAAATAAACCTCAGGGTAAAACactatttaaaaatattgattttcaacgC
ATCGTTATCCCTTCTGCaacttttaaagataaaaaatcCTCAAAAGAAAC
AACATATAAGAACAAATCGAAAACTGGCAAACTTTTAAACAAGAAAAAGA
TAAATCCAGACAGGTTATTAAAAGGTCTTactcaaaataattcaaaatta
tcACACACTTCTATGAACATCAATACTAATCGACCACCTTCTGACAACAA
TAACATTCCATTGAACAATCAGAATGATCATGAGATGAATGAAGAACCAC
GTGTGAACGAAACAAATATTCAATTGAGTGACCATCATCATGGGCACCTT
AACA Run BLAST on NCBI protein sequence of TCONS_00055713-protein >TCONS_00055713-protein ID=TCONS_00055713-protein|Name=TCONS_00055713-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp
RKVVPDLVIEENFENVLLGNLSLQAVIFHHGETANSGHYTSAVKYKDTWY
SINDDKVFCIKNANFNCKVNDETVPYLLIYKKSKPQKISPSLPIHNSPVR
NFKFDNNISKVAFCSNSKTTKSMGATSFTKKMDSVDMHLQEECDIYKATF
LSPQKNESTSAIRKRRKIMRSEIKVKKLCKFPMKLKKNLLDRPVIKITFP
NKPQGKTLFKNIDFQRIVIPSATFKDKKSSKETTYKNKSKTGKLLNKKKI
NPDRLLKGLTQNNSKLSHTSMNINTNRPPSDNNNIPLNNQNDHEMNEEPR
VNETNIQLSDHHHGHLN Run BLAST on NCBI transcript from alignment at scaffold_257:100192..101145 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055713 ID=TCONS_00055713|Name=TCONS_00055713|organism=Clytia hemisphaerica|type=transcript|length=954bp|location=Sequence derived from alignment at scaffold_257:100192..101145 (Clytia hemisphaerica)
TGTTAAGGTGCCCATGATGATGGTCACTCAATTGAATATTTGTTTCGTTC
ACACGTGGTTCTTCATTCATCTCATGATCATTCTGATTGTTCAATGGAAT
GTTATTGTTGTCAGAAGGTGGTCGATTAGTATTGATGTTCATAGAAGTGT
GTgataattttgaattattttgagtAAGACCTTTTAATAACCTGTCTGGA
TTTATCTTTTTCTTGTTTAAAAGTTTGCCAGTTTTCGATTTGTTCTTATA
TGTTGTTTCTTTTGAGgattttttatctttaaaagttGCAGAAGGGATAA
CGATGcgttgaaaatcaatatttttaaatagtGTTTTACCCTGAGGTTTA
TTTGGGAACGTTATTTTTATGACTGGTCTATCAAGCAAgttctttttcag
tttcattGGAAATTTACacaacttttttacttttatttcacTTCGCATAA
TTTTTCTTCGTTTCCTAATTGCGCTGGTGCTTTCATTCTTTTGAGGTGAT
AAAAAAGTAGCTTTGTAAATGTCACATTCCTCTTGCAAATGCATATCAAC
ACTGtccattttttttgtgaaagaggTAGCACCCATACTTTTGGTGGTTT
TTGAGTTTGAGCAAAAAGCGACTTTAGAAATGttattatcaaatttaaaa
ttgcgTACAGGGCTATTATGAATTGGTaaagatggtgaaattttttgtgg
ttttgattttttataaattaataaatatGGAACAGTCTCATCATTAACTT
TACAGTTGAAGTTTGCATTTTTGATACAAAAAACTTTATCATCATTAATT
GAATACCACGTATCTTTATATTTGACAGCTGATGTATAGTGACCACTATT
TGCGGTTTCACCGTGATGGAAAATGACAGCTTGTAAACTCAAATTTCCCA
AAAGaacattctcaaaattttcttcgattaCTAAATCAGGTACCACTTTT
CTTG Coding sequence (CDS) from alignment at scaffold_257:100192..101145 >TCONS_00055713 ID=TCONS_00055713|Name=TCONS_00055713|organism=Clytia hemisphaerica|type=CDS|length=951bp|location=Sequence derived from alignment at scaffold_257:100192..101145 (Clytia hemisphaerica)
GTTAAGGTGCCCATGATGATGGTCACTCAATTGAATATTTGTTTCGTTCA
CACGTGGTTCTTCATTCATCTCATGATCATTCTGATTGTTCAATGGAATG
TTATTGTTGTCAGAAGGTGGTCGATTAGTATTGATGTTCATAGAAGTGTG
TgataattttgaattattttgagtAAGACCTTTTAATAACCTGTCTGGAT
TTATCTTTTTCTTGTTTAAAAGTTTGCCAGTTTTCGATTTGTTCTTATAT
GTTGTTTCTTTTGAGgattttttatctttaaaagttGCAGAAGGGATAAC
GATGcgttgaaaatcaatatttttaaatagtGTTTTACCCTGAGGTTTAT
TTGGGAACGTTATTTTTATGACTGGTCTATCAAGCAAgttctttttcagt
ttcattGGAAATTTACacaacttttttacttttatttcacTTCGCATAAT
TTTTCTTCGTTTCCTAATTGCGCTGGTGCTTTCATTCTTTTGAGGTGATA
AAAAAGTAGCTTTGTAAATGTCACATTCCTCTTGCAAATGCATATCAACA
CTGtccattttttttgtgaaagaggTAGCACCCATACTTTTGGTGGTTTT
TGAGTTTGAGCAAAAAGCGACTTTAGAAATGttattatcaaatttaaaat
tgcgTACAGGGCTATTATGAATTGGTaaagatggtgaaattttttgtggt
tttgattttttataaattaataaatatGGAACAGTCTCATCATTAACTTT
ACAGTTGAAGTTTGCATTTTTGATACAAAAAACTTTATCATCATTAATTG
AATACCACGTATCTTTATATTTGACAGCTGATGTATAGTGACCACTATTT
GCGGTTTCACCGTGATGGAAAATGACAGCTTGTAAACTCAAATTTCCCAA
AAGaacattctcaaaattttcttcgattaCTAAATCAGGTACCACTTTTC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055713-exon-scaffold_257-1491911889:100192..101145 | TCONS_00055713-exon-scaffold_257-1491911889:100192..101145 | Clytia hemisphaerica | exon |
| TCONS_00055713-exon-scaffold_257-1510915933:100192..101145 | TCONS_00055713-exon-scaffold_257-1510915933:100192..101145 | Clytia hemisphaerica | exon |
| TCONS_00055713-exon-scaffold_257-1575043694:100192..101145 | TCONS_00055713-exon-scaffold_257-1575043694:100192..101145 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_257 | supercontig | scaffold_257:100192..101145 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR028889 | USP_dom |
Blast
The following BLAST results are available for this feature:
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