TCONS_00055710 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055710
Unique NameTCONS_00055710
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055710 ID=TCONS_00055710|Name=TCONS_00055710|organism=Clytia hemisphaerica|type=transcript|length=796bp
TGTTAATGAAATTCTCTCCTGGTACTTGGAGAAAAGTTGATGATTTGAAA
AATGGATTTGATACATACACAGAATCATTTGCTCAATTTCTGGACTCTGA
CTATTGCCCTGAATCTGTAAGAATGATGCTGCAGTTTGCCAAGGCTGAAT
ATGACAAGAAAGTTGCTAGACGCCAAAAGAGACAAAACAATCAGCCGAAT
CAACCAATAGAAGAAATAAATTTCTCTCAATCAACACTTGAAGGAAGTCA
AGATAGTCAATCTTCACAAGGCTCTGTCGTTGATACAATGGGAAACCAAC
TTTTTAGAGATATTGCGAGAGAAAATAGACTATCAATTGAAGAAGCTTCT
GTCGATGAGGAAGTGCTATACAATGGTGGAATTGATTATGACTGGCACGC
AAATGGCTTGATGTGGTTGGGTGTACAATCCTTTCCTGACACACTTATAG
AAGAAACAAAGAATTGGCTATCCGATGTATCAAAGCAAGCAAATGAAGCA
TTTGAGAGGGAAGGTAGACTTTGTACATTGCCAGATGTTGACCCAAAATT
AGTAAATCTAATCTAAATGCTAATTGTCAACTACAATATTCACCTTCTTT
TGGATTATGCGAGAGGAAATTTTGCTGTAGGATATGAACATTGCAAACGA
CTAATTGTTCAAGGCTGTGCAGGTACAGGTAAGTCACAAGTAGTAAAAAT
TATCACCCGTCTTGTGCGTCGCATTTTCAAATGTAATAGATCCGTTTTAA
ATGTTGCTCCTACTAGTGCAGCAGGTATTCTTTTACCTGATGGCGG
Run BLAST on NCBI

protein sequence of TCONS_00055710-protein

>TCONS_00055710-protein ID=TCONS_00055710-protein|Name=TCONS_00055710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
LMKFSPGTWRKVDDLKNGFDTYTESFAQFLDSDYCPESVRMMLQFAKAEY
DKKVARRQKRQNNQPNQPIEEINFSQSTLEGSQDSQSSQGSVVDTMGNQL
FRDIARENRLSIEEASVDEEVLYNGGIDYDWHANGLMWLGVQSFPDTLIE
ETKNWLSDVSKQANEAFEREGRLCTLPDVDPKLVNLI
Run BLAST on NCBI

transcript from alignment at scaffold_257:76880..77675

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055710 ID=TCONS_00055710|Name=TCONS_00055710|organism=Clytia hemisphaerica|type=transcript|length=796bp|location=Sequence derived from alignment at scaffold_257:76880..77675 (Clytia hemisphaerica)
CCGCCATCAGGTAAAAGAATACCTGCTGCACTAGTAGGAGCAACATTTAA
AACGGATCTATTACATTTGAAAATGCGACGCACAAGACGGGTGATAATTT
TTACTACTTGTGACTTACCTGTACCTGCACAGCCTTGAACAATTAGTCGT
TTGCAATGTTCATATCCTACAGCAAAATTTCCTCTCGCATAATCCAAAAG
AAGGTGAATATTGTAGTTGACAATTAGCATTTAGATTAGATTTACTAATT
TTGGGTCAACATCTGGCAATGTACAAAGTCTACCTTCCCTCTCAAATGCT
TCATTTGCTTGCTTTGATACATCGGATAGCCAATTCTTTGTTTCTTCTAT
AAGTGTGTCAGGAAAGGATTGTACACCCAACCACATCAAGCCATTTGCGT
GCCAGTCATAATCAATTCCACCATTGTATAGCACTTCCTCATCGACAGAA
GCTTCTTCAATTGATAGTCTATTTTCTCTCGCAATATCTCTAAAAAGTTG
GTTTCCCATTGTATCAACGACAGAGCCTTGTGAAGATTGACTATCTTGAC
TTCCTTCAAGTGTTGATTGAGAGAAATTTATTTCTTCTATTGGTTGATTC
GGCTGATTGTTTTGTCTCTTTTGGCGTCTAGCAACTTTCTTGTCATATTC
AGCCTTGGCAAACTGCAGCATCATTCTTACAGATTCAGGGCAATAGTCAG
AGTCCAGAAATTGAGCAAATGATTCTGTGTATGTATCAAATCCATTTTTC
AAATCATCAACTTTTCTCCAAGTACCAGGAGAGAATTTCATTAACA

Coding sequence (CDS) from alignment at scaffold_257:76880..77675

>TCONS_00055710 ID=TCONS_00055710|Name=TCONS_00055710|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at scaffold_257:76880..77675 (Clytia hemisphaerica)
TTAGATTAGATTTACTAATTTTGGGTCAACATCTGGCAATGTACAAAGTC
TACCTTCCCTCTCAAATGCTTCATTTGCTTGCTTTGATACATCGGATAGC
CAATTCTTTGTTTCTTCTATAAGTGTGTCAGGAAAGGATTGTACACCCAA
CCACATCAAGCCATTTGCGTGCCAGTCATAATCAATTCCACCATTGTATA
GCACTTCCTCATCGACAGAAGCTTCTTCAATTGATAGTCTATTTTCTCTC
GCAATATCTCTAAAAAGTTGGTTTCCCATTGTATCAACGACAGAGCCTTG
TGAAGATTGACTATCTTGACTTCCTTCAAGTGTTGATTGAGAGAAATTTA
TTTCTTCTATTGGTTGATTCGGCTGATTGTTTTGTCTCTTTTGGCGTCTA
GCAACTTTCTTGTCATATTCAGCCTTGGCAAACTGCAGCATCATTCTTAC
AGATTCAGGGCAATAGTCAGAGTCCAGAAATTGAGCAAATGATTCTGTGT
ATGTATCAAATCCATTTTTCAAATCATCAACTTTTCTCCAAGTACCAGGA
GAGAATTTCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035060XLOC_035060Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055710-proteinTCONS_00055710-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055710-exon-scaffold_257-1491911889:76880..77675TCONS_00055710-exon-scaffold_257-1491911889:76880..77675Clytia hemisphaericaexon
TCONS_00055710-exon-scaffold_257-1510915933:76880..77675TCONS_00055710-exon-scaffold_257-1510915933:76880..77675Clytia hemisphaericaexon
TCONS_00055710-exon-scaffold_257-1575043694:76880..77675TCONS_00055710-exon-scaffold_257-1575043694:76880..77675Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_257supercontigscaffold_257:76880..77675 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.214938	0.37918	0.137466	0.371426	0	0	0	0.097149	0.139424	0	0.306164	0.163513	0.107271	0	0.0686386	0	0.0453714	0	0	0	0.0584359	0.085509	0	0.189007	0.234251	0.201853	0.697507	0.493866	0.0670827	0.136693
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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