|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055698 ID=TCONS_00055698|Name=TCONS_00055698|organism=Clytia hemisphaerica|type=transcript|length=848bp
AATACAAATTGACTTCACTAGAATGGAGAAGGGAGAAACTCACACAAACT
CGAAGAGGTAGACAGGAGAATGAGATAAATCCGCTTTCAAATTTAAAAGC
TCAAGATCTTTTTAATGAAGTGATGGACCGAAATCTATTGGAAAAAGATT
CAAGCCTTCTGAAGGACTACCTGGAACACCTATTAAAGACTGAAATGGCT
GGCCTGGTGCGTCCTCCTGCTTTATGCAAAGGTTGTGTGAATATATCAAC
AGAAGAGACAAATACATCAAAATATGAGATTAGTCCGAGTGAACCACTCC
ACGACTTGAAGGGTCACATACGCAATCTATGGGATCTTTTACCAGATCAT
CTCCCTACAAATTTAAAGGAAGAGTTCGAAAAGGAGGTCGCTATTATTCT
CGGACCAAAGGACAAATATCGTGGTGCTGACTTCCGTTTCTCTGCTATTG
TTGTTCACCGTCAAATGAAACCTAAATTTCCATCCGAAGTTTCTGATTTA
ACTTATTCGCTGGTTGAGATTTCTAGGCTTGTTTACCAACCCGCACTGAG
ACGATctccaaaatcaattttgaggCTCTATACAATGTCTTTCTTGCATA
GTATGAGGTGTAAGCAAATCTTTGGTGAATATCCAAAATTATCTAAGTTT
TATGGTGAATACTATCACTCAATCATCGATCATTTTGCCTTTGTTCAAAG
AATTGTCGCCCCTTCATCTCTCCACACGGAAAGTGAAGAGCGACTATTTG
GAACGCTGCGATTGATAGGTCTGGCCACATCAGGAAGATCAGTAGAATCA
GTTCGTGATGTTGGTATAGTAAGGTAGACTTTTACGTTATTTCAGACA Run BLAST on NCBI transcript from alignment at scaffold_257:1763..3162+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055698 ID=TCONS_00055698|Name=TCONS_00055698|organism=Clytia hemisphaerica|type=transcript|length=1400bp|location=Sequence derived from alignment at scaffold_257:1763..3162+ (Clytia hemisphaerica)
AATACAAATTGACTTCACTAGAATGGAGAAGGGAGAAAGTATGTACCATT
GAATTTTCCGTTAATATTTGTAAGAATGCATCCAATGTGAAAGCTAAGTT
TTTCTGTTCATTtaagttcttttttttaaatttctcatttttcacTGATA
CTTTCAGCTCACACAAACTCGAAGAGGTAGACAGGAGAATGAGATAAATC
CGCTTTCAAATTTAAAAGCTCAAGATCTTTTTAATGAAGTGATGGACCGA
AATCTATTGGAAAAAGATTCAAGCCTTCTGAAGGACTACCTGGAACACCT
ATTAAAGACTGAAATGGCTGGCCTGGTGCGTCCTCCTGCTTTATGCAAAG
GTTGTGTGAATATATCAACAGAAGAGACAAATACATCAAAATATGAGGTT
TGACATTTGACTTTACCAGACACTAACTTTACTTGACATAACATGACATC
AATTGCTCCCATGAGCTAGCTATAAGACCTGGTAGCTTAATTTGGTAGAG
CAAGGACACAAGTCCTGACATGAGTTCGAATCTCATCCAGGACAAATTGA
CTGATTACAACTGACTAATATTAcaaaattttattctttttaatttgtta
tGAAGATTTTCTAACATTaactaaaattacaaaattttattCTGTTTAAT
TTGTTATGAAGATTTCTCTCTGTTTGAAAGTCATTATATGTATTTTACTG
TATTCTATTTAAGATTGATCACTTtctaaatggaaaaaaatggaACATGA
ATATCAATAACTTATACATTTACTCAATAAAGTTCCATTTTTTTCCATGT
TTATCCCACAATGATAATGATTCTTTTCAGATTAGTCCGAGTGAACCACT
CCACGACTTGAAGGGTCACATACGCAATCTATGGGATCTTTTACCAGATC
ATCTCCCTACAAATTTAAAGGAAGAGTTCGAAAAGGAGGTCGCTATTATT
CTCGGACCAAAGGACAAATATCGTGGTGCTGACTTCCGTTTCTCTGCTAT
TGTTGTTCACCGTCAAATGAAACCTAAATTTCCATCCGAAGTTTCTGATT
TAACTTATTCGCTGGTTGAGATTTCTAGGCTTGTTTACCAACCCGCACTG
AGACGATctccaaaatcaattttgaggCTCTATACAATGTCTTTCTTGCA
TAGTATGAGGTGTAAGCAAATCTTTGGTGAATATCCAAAATTATCTAAGT
TTTATGGTGAATACTATCACTCAATCATCGATCATTTTGCCTTTGTTCAA
AGAATTGTCGCCCCTTCATCTCTCCACACGGAAAGTGAAGAGCGACTATT
TGGAACGCTGCGATTGATAGGTCTGGCCACATCAGGAAGATCAGTAGAAT
CAGTTCGTGATGTTGGTATAGTAAGGTAGACTTTTACGTTATTTCAGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055698-exon-scaffold_257-1491911889:1763..1800 | TCONS_00055698-exon-scaffold_257-1491911889:1763..1800 | Clytia hemisphaerica | exon |
| TCONS_00055698-exon-scaffold_257-1510915933:1763..1800 | TCONS_00055698-exon-scaffold_257-1510915933:1763..1800 | Clytia hemisphaerica | exon |
| TCONS_00055698-exon-scaffold_257-1575043694:1763..1800 | TCONS_00055698-exon-scaffold_257-1575043694:1763..1800 | Clytia hemisphaerica | exon |
| TCONS_00055698-exon-scaffold_257-1491911889:1920..2159 | TCONS_00055698-exon-scaffold_257-1491911889:1920..2159 | Clytia hemisphaerica | exon |
| TCONS_00055698-exon-scaffold_257-1510915933:1920..2159 | TCONS_00055698-exon-scaffold_257-1510915933:1920..2159 | Clytia hemisphaerica | exon |
| TCONS_00055698-exon-scaffold_257-1575043694:1920..2159 | TCONS_00055698-exon-scaffold_257-1575043694:1920..2159 | Clytia hemisphaerica | exon |
| TCONS_00055698-exon-scaffold_257-1491911889:2593..3162 | TCONS_00055698-exon-scaffold_257-1491911889:2593..3162 | Clytia hemisphaerica | exon |
| TCONS_00055698-exon-scaffold_257-1510915933:2593..3162 | TCONS_00055698-exon-scaffold_257-1510915933:2593..3162 | Clytia hemisphaerica | exon |
| TCONS_00055698-exon-scaffold_257-1575043694:2593..3162 | TCONS_00055698-exon-scaffold_257-1575043694:2593..3162 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_257 | supercontig | scaffold_257:1763..3162 + |
Blast
The following BLAST results are available for this feature:
|
