TCONS_00055692 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055692
Unique NameTCONS_00055692
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length349

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055692 ID=TCONS_00055692|Name=TCONS_00055692|organism=Clytia hemisphaerica|type=transcript|length=349bp
tttttaagcgAGAGCGCTTCATGATTTGCTTCCTAAGTTCCTTTGTCATG
TGAGATTTGTCATTGCCTCTGATAGTCTTTTTCTTTAATGGGGCATATTT
ATCCAAAATATTATTAAATATTAGCTCAAATTGACTATAATCTGTCGGTT
GGAATATTCTTAAGGTATGAGAAAGTTCTAAATTAAAATCAAAGccttta
aatttagaaaaatctcGATATTGAATGGTTTGTGGAGGTAGGCTTACGTA
GCCTTCTCTAAACATAGTTATTGGCATTAGATGAAAATCACTTAAATCAG
TCTCAACAGCATGGGAATGTTGAAGGCTAGACTTGCAGTTTGTTAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00055692-protein

>TCONS_00055692-protein ID=TCONS_00055692-protein|Name=TCONS_00055692-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
ILTNCKSSLQHSHAVETDLSDFHLMPITMFREGYVSLPPQTIQYRDFSKF
KGFDFNLELSHTLRIFQPTDYSQFELIFNNILDKYAPLKKKTIRGNDKSH
MTKELRKQIMKRSRLK
Run BLAST on NCBI

transcript from alignment at scaffold_256:80656..81004

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055692 ID=TCONS_00055692|Name=TCONS_00055692|organism=Clytia hemisphaerica|type=transcript|length=349bp|location=Sequence derived from alignment at scaffold_256:80656..81004 (Clytia hemisphaerica)
ATTTTAACAAACTGCAAGTCTAGCCTTCAACATTCCCATGCTGTTGAGAC
TGATTTAAGTGATTTTCATCTAATGCCAATAACTATGTTTAGAGAAGGCT
ACGTAAGCCTACCTCCACAAACCATTCAATATCgagatttttctaaattt
aaaggCTTTGATTTTAATTTAGAACTTTCTCATACCTTAAGAATATTCCA
ACCGACAGATTATAGTCAATTTGAGCTAATATTTAATAATATTTTGGATA
AATATGCCCCATTAAAGAAAAAGACTATCAGAGGCAATGACAAATCTCAC
ATGACAAAGGAACTTAGGAAGCAAATCATGAAGCGCTCTcgcttaaaaa

Coding sequence (CDS) from alignment at scaffold_256:80656..81004

>TCONS_00055692 ID=TCONS_00055692|Name=TCONS_00055692|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at scaffold_256:80656..81004 (Clytia hemisphaerica)
ATTTTAACAAACTGCAAGTCTAGCCTTCAACATTCCCATGCTGTTGAGAC
TGATTTAAGTGATTTTCATCTAATGCCAATAACTATGTTTAGAGAAGGCT
ACGTAAGCCTACCTCCACAAACCATTCAATATCgagatttttctaaattt
aaaggCTTTGATTTTAATTTAGAACTTTCTCATACCTTAAGAATATTCCA
ACCGACAGATTATAGTCAATTTGAGCTAATATTTAATAATATTTTGGATA
AATATGCCCCATTAAAGAAAAAGACTATCAGAGGCAATGACAAATCTCAC
ATGACAAAGGAACTTAGGAAGCAAATCATGAAGCGCTCTcgcttaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035047XLOC_035047Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055692-exon-scaffold_256-1491911889:80656..81004TCONS_00055692-exon-scaffold_256-1491911889:80656..81004Clytia hemisphaericaexon
TCONS_00055692-exon-scaffold_256-1510915933:80656..81004TCONS_00055692-exon-scaffold_256-1510915933:80656..81004Clytia hemisphaericaexon
TCONS_00055692-exon-scaffold_256-1575043694:80656..81004TCONS_00055692-exon-scaffold_256-1575043694:80656..81004Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055692-proteinTCONS_00055692-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_256supercontigscaffold_256:80656..81004 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.53412	1.97693	0.860778	0	0.683481	0	0.325801	0	0.854182	0	0.770221	0	0.505609	0.700107	0.719479	0.617689	1.14141	2.53481	0.808148	1.12756	0.980052	2.15116	2.0339	1.84911	0	2.1854	0.694956	2.59587	0.843803	1.14627
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top