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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055679 ID=TCONS_00055679|Name=TCONS_00055679|organism=Clytia hemisphaerica|type=transcript|length=1560bpRun BLAST on NCBI transcript from alignment at scaffold_256:51092..52651+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055679 ID=TCONS_00055679|Name=TCONS_00055679|organism=Clytia hemisphaerica|type=transcript|length=1560bp|location=Sequence derived from alignment at scaffold_256:51092..52651+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055679 vs. Swiss-Prot (Human)
Match: ZNF92 (Zinc finger protein 92 OS=Homo sapiens GN=ZNF92 PE=2 SV=2) HSP 1 Score: 266.159 bits (679), Expect = 9.137e-81 Identity = 143/328 (43.60%), Postives = 201/328 (61.28%), Query Frame = -1
Query: 220 RGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEKTFKCEECGNCFQRKELFKVHTRIHTKEKSFKCEECGKCFPKKGSLKVYMRMHTGQKLFKCIECGKCFSVKRRLNRHLYLHSEIKPFKCEKCGKQFSQRGYLIQHSYIHNKINSFKCKECGRCFAHKNGFDYHIKTHKRKKLLLQLIEREKPLQCIKCGKCFNSVSSXTSSPINRTR--PIQCIKSCKCFNSVSCLTAHVKSHSKEIVQPDGKS 1197
R S+KC+ECGKAF ++ L +H IHTGE+P+KC++CGK F +S LT+H I+H+ KP+KCEECGK F + +L KH ++HTE+K +KCE+CGK F L +HK IH ++K +KCEECG F+ + K H IHT EK +KCEECGK F + +L + +HTG+K +KC ECGK F+ L +H +H+ KP+KCE+CGK F Q L +H IH +KC++CG+ F+ + F H + H +KP +C +CGK F+ S+ T I TR P +C + K FN S T H +I+ +GKS
Sbjct: 197 REYSYKCEECGKAFNWSSTLTKHKIIHTGEKPYKCEECGKAFNRSSNLTKHKIIHTGEKPYKCEECGKAFNRSSTLTKHKRIHTEEKPYKCEECGKAFNQFSILNKHKRIHMEDKPYKCEECGKAFRVFSILKKHKIIHTGEKPYKCEECGKAFNQFSNLTKHKIIHTGEKPYKCDECGKAFNQSSTLTKHKRIHTGEKPYKCEECGKAFKQSSTLTEHKIIHTGEKPYKCEKCGKAFSWSSAFTKHKRNHM----------EDKPYKCEECGKAFSVFSTLTKHKIIHTREKPYKCEECGKAFNQSSIFTKH------KIIHTEGKS 508 HSP 2 Score: 243.817 bits (621), Expect = 2.444e-72 Identity = 138/326 (42.33%), Postives = 191/326 (58.59%), Query Frame = -1
Query: 244 NLIRKERGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEKTFKCEECGNCFQRKELFKVHTRIHTKEKSFKCEECGKCFPKKGSLKVYMRMHTGQKLFKCIECGKCFSVKRRLNRHLYLHSEIKPFKCEKCGKQFSQRGYLIQHSYIHNKINSFKCKECGRCFAHKNGFDYHIKTHKRKKLLLQLIEREKPLQCIKCGKCFNSVSSXTSSPINRT--RPIQCIKSCKCFNSVSCLTAHVKSHSKE 1215
N IR + FKCK GK+F L +H +IHT E +KC++CGK F S LT+H I+H+ KP+KCEECGK F + +L KH +HT +K +KCE+CGK F + +L +HK IHT+EK +KCEECG F + + H RIH ++K +KCEECGK F LK + +HTG+K +KC ECGK F+ L +H +H+ KP+KC++CGK F+Q L +H IH +KC+ECG+ F + H H EKP +C KCGK F+ S+ T N +P +C + K F+ S LT H H++E
Sbjct: 163 NKIRHTGKKPFKCKNRGKSFCMLSQLTQHKKIHTREYSYKCEECGKAFNWSSTLTKHKIIHTGEKPYKCEECGKAFNRSSNLTKHKIIHTGEKPYKCEECGKAFNRSSTLTKHKRIHTEEKPYKCEECGKAFNQFSILNKHKRIHMEDKPYKCEECGKAFRVFSILKKHKIIHTGEKPYKCEECGKAFNQFSNLTKHKIIHTGEKPYKCDECGKAFNQSSTLTKHKRIHTGEKPYKCEECGKAFKQSSTLTEHKIIH----------TGEKPYKCEKCGKAFSWSSAFTKHKRNHMEDKPYKCEECGKAFSVFSTLTKHKIIHTRE 478 HSP 3 Score: 232.261 bits (591), Expect = 4.473e-68 Identity = 136/326 (41.72%), Postives = 180/326 (55.21%), Query Frame = -1
Query: 271 QSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEKTFKCEECGNCFQRKELFKVHTRIHTKEKSFKCEECGKCFPKKGSLKVYMRMHTGQKLFKCIECGKCFSVKRRLNRHLYLHSEIKPFKCEKCGKQFSQRGYLIQHSYIHNKINSFKCKECGRCFAHKNGFDYHIKTHKRKKLL------------LQLIER------EKPLQCIKCGKCFNSVSSXTSSPINRTRPIQCIKSC-KCFNSVSCLT 1191
+ +KC+ECGKAF + L +H RIHT E+P+KC++CGK F Q L +H +H KP+KCEECGK F+ LKKH +HT +K +KCE+CGK F +L +HK IHT EK +KC+ECG F + H RIHT EK +KCEECGK F + +L + +HTG+K +KC +CGK FS +H H E KP+KCE+CGK FS L +H IH + +KC+ECG+ F + F H H K L R EKP + +C K FN S+ + I T C C + FN S T
Sbjct: 255 KPYKCEECGKAFNRSSTLTKHKRIHTEEKPYKCEECGKAFNQFSILNKHKRIHMEDKPYKCEECGKAFRVFSILKKHKIIHTGEKPYKCEECGKAFNQFSNLTKHKIIHTGEKPYKCDECGKAFNQSSTLTKHKRIHTGEKPYKCEECGKAFKQSSTLTEHKIIHTGEKPYKCEKCGKAFSWSSAFTKHKRNHMEDKPYKCEECGKAFSVFSTLTKHKIIHTREKPYKCEECGKAFNQSSIFTKHKIIHTEGKSYKCEKCGNAFNQSSNLTARKIIYTGEKPYKYEECDKAFNKFSTLITHQIIYTGEKPCKHECGRAFNKSSNYT 580 HSP 4 Score: 224.942 bits (572), Expect = 2.652e-65 Identity = 130/316 (41.14%), Postives = 179/316 (56.65%), Query Frame = -1
Query: 244 FKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEKTFKCEECGNCFQRKELFKVHTRIHTKEKSFKCEECGKCFPKKGSLKVYMRMHTGQKLFKCIECGKCFSVKRRLNRHLYLHSEIKPFKCEKCGKQFSQRGYLIQHSYIHNKINSFKCKECGRCFAHKNGFDYHIKTHKRKKLLLQLIEREKPLQCIKCGKCFNSVSSXTSSPINRT--RPIQCIKSCKCFNSVSCLTAHVKSHSKE 1185
F+C + K F ++ R+ HTG++PFKC++ GK F LTQH +H+ +KCEECGK F + +L KH +HT +K +KCE+CGK F + +L +HK IHT EK +KCEECG F R H RIHT+EK +KCEECGK F + L + R+H K +KC ECGK F V L +H +H+ KP+KCE+CGK F+Q L +H IH +KC ECG+ F + H + H EKP +C +CGK F S+ T I T +P +C K K F+ S T H ++H ++
Sbjct: 145 FQCDKYVKVFHKFPNVNRNKIRHTGKKPFKCKNRGKSFCMLSQLTQHKKIHTREYSYKCEECGKAFNWSSTLTKHKIIHTGEKPYKCEECGKAFNRSSNLTKHKIIHTGEKPYKCEECGKAFNRSSTLTKHKRIHTEEKPYKCEECGKAFNQFSILNKHKRIHMEDKPYKCEECGKAFRVFSILKKHKIIHTGEKPYKCEECGKAFNQFSNLTKHKIIHTGEKPYKCDECGKAFNQSSTLTKHKRIH----------TGEKPYKCEECGKAFKQSSTLTEHKIIHTGEKPYKCEKCGKAFSWSSAFTKHKRNHMED 450 The following BLAST results are available for this feature:
BLAST of TCONS_00055679 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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