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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055668 ID=TCONS_00055668|Name=TCONS_00055668|organism=Clytia hemisphaerica|type=transcript|length=2336bpRun BLAST on NCBI transcript from alignment at scaffold_256:1759..52578+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055668 ID=TCONS_00055668|Name=TCONS_00055668|organism=Clytia hemisphaerica|type=transcript|length=50820bp|location=Sequence derived from alignment at scaffold_256:1759..52578+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055668 vs. Swiss-Prot (Human)
Match: ZN681 (Zinc finger protein 681 OS=Homo sapiens GN=ZNF681 PE=2 SV=2) HSP 1 Score: 262.692 bits (670), Expect = 1.708e-76 Identity = 140/304 (46.05%), Postives = 189/304 (62.17%), Query Frame = -3
Query: 1129 FKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEKTFKCEECGNCFQRKELFKVHTRIHTKEKSFKCEECGKCFPKKGSLKVYMRMHTGQKLFKCIECGKCFSVKRRLNRHLYLHSEIKPFKCEKCGKQFSQRGYLIQHSYIHNKINSFKCKECGRCFAHKNGFDYHIKTHKRKKLLLQLIEREKPLQCIKCGKCFNSVSCLTAHVKSHS-EEIVQPDR-KSEFKELS 2034
+KC+ECGKAF + L RH IHTGE+P++C++CGK F QS LT H I+H+ KP+KCEECGK F + L +H +HT +K ++CEKCGK + +L +HK IHT+EK +KCEECG F + H RIHT EK +KCEECGK F + L + R+HTG+K +KC ECGK F +L H +H+ KP+ CE+CGK F+ +L H IH ++C+ECG+ F + H+ HKR + EKP QC KCGK FN S LT H K H+ E++ +P R S+F+ S
Sbjct: 338 YKCEECGKAFNQSSHLTRHKIIHTGEKPYRCEECGKAFRQSSHLTTHKIIHTGEKPYKCEECGKAFNKSSHLTRHKSIHTGEKPYQCEKCGKASNQSSNLTEHKNIHTEEKPYKCEECGKAFNQFSNLTTHKRIHTGEKPYKCEECGKAFNQSSILTTHKRIHTGEKSYKCEECGKAFYRSSKLTEHKKIHTGEKPYTCEECGKAFNHSSHLATHKVIHTGEKPYQCEECGKAFNQSS----HLTRHKR------IHTGEKPYQCEKCGKAFNQSSNLTGHKKIHTGEKLYKPKRCNSDFENTS 631 HSP 2 Score: 221.09 bits (562), Expect = 1.419e-61 Identity = 114/251 (45.42%), Postives = 153/251 (60.96%), Query Frame = -3
Query: 1282 FKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEKTFKCEECGNCFQRKELFKVHTRIHTKEKSFKCEECGKCFPKKGSLKVYMRMHTGQKLFKCIECGKCFSVKRRLNRHLYLHSEIKPFKCEKCGKQFSQRGYLIQHSYIHNKINSFKCKECGRCFAHKNGFDYHIKTHKRKK 2034
+KC+ECGKAF + L RH IHTGE+P++C+ CGK QS LT+H +H+ KP+KCEECGK F +L H ++HT +K +KCE+CGK F + L HK IHT EK++KCEECG F R H +IHT EK + CEECGK F L + +HTG+K ++C ECGK F+ L RH +H+ KP++CEKCGK F+Q L H IH +K K C F + + F H + + +K
Sbjct: 394 YKCEECGKAFNKSSHLTRHKSIHTGEKPYQCEKCGKASNQSSNLTEHKNIHTEEKPYKCEECGKAFNQFSNLTTHKRIHTGEKPYKCEECGKAFNQSSILTTHKRIHTGEKSYKCEECGKAFYRSSKLTEHKKIHTGEKPYTCEECGKAFNHSSHLATHKVIHTGEKPYQCEECGKAFNQSSHLTRHKRIHTGEKPYQCEKCGKAFNQSSNLTGHKKIHTGEKLYKPKRCNSDFENTSKFSKHKRNYAGEK 644 HSP 3 Score: 204.912 bits (520), Expect = 3.634e-56 Identity = 123/316 (38.92%), Postives = 172/316 (54.43%), Query Frame = -3
Query: 1171 FKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIK----------------------------PFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEKTFKCEECGNCFQRKELFKVHTRIHTKEKSFKCEECGKCFPKKGSLKVYMRMHTGQKLFKCIECGKCFSVKRRLNRHLYLHSEIKPFKCEKCGKQFSQRGYLIQHSYIHNKINSFKCKECGRCFAHKNGFDYHIKTHKRKKLLLQLIEREKPLQCIKCGKCFNSVSCLTAHVKSHSEE 2034
+KC++CGKAF + +H RIH GE+ + C++CGK Q LT H I+++ K P+K EEC K F + +L H +HT +K + ++CGK F + L +HK IHT EK +KCEECG F + H IHT EK ++CEECGK F + L + +HTG+K +KC ECGK F+ L RH +H+ KP++CEKCGK +Q L +H IH + +KC+ECG+ F N F ++ THKR + EKP +C +CGK FN S LT H + H+ E
Sbjct: 198 YKCEDCGKAFNGSSIFTKHKRIHIGEKSYICEECGKACNQFTNLTTHKIIYTRDKLYKREECSKAFNLSSHITTHTIIHTGENPYKREECDKAFNQSLTLTTHKIIHTREKLNEYKECGKAFNQSSHLTRHKIIHTGEKPYKCEECGKAFNQSSHLTRHKIIHTGEKPYRCEECGKAFRQSSHLTTHKIIHTGEKPYKCEECGKAFNKSSHLTRHKSIHTGEKPYQCEKCGKASNQSSNLTEHKNIHTEEKPYKCEECGKAF---NQFS-NLTTHKR------IHTGEKPYKCEECGKAFNQSSILTTHKRIHTGE 503 HSP 4 Score: 202.986 bits (515), Expect = 1.624e-55 Identity = 123/292 (42.12%), Postives = 169/292 (57.88%), Query Frame = -3
Query: 1171 RGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEKTFKCEECGNCFQRKELFKVHTRIHTKEKSFKCEECGKCFPKKGSLKVYMRMHTGQKLFKCIECGKCFSVKRRLNRHLYLHSEIKPFKCEKCGKQFSQRGYLIQHSYIHNKINSFKCKECGRCFAHKNGFDYHIKTHKRKKLLLQLIEREKPLQCIKCGKCFNSVSCLTAHVKSHSEE 2046
R + +K +EC KAF + + H IHTGE P+K ++C K F QS LT H I+H+ K + +ECGK F + L +H +HT +K +KCE+CGK F + L +HK IHT EK ++CEECG F++ H IHT EK +KCEECGK F K L + +HTG+K ++C +CGK + L H +H+E KP+KCE+CGK F+Q L H IH +KC+ECG+ F + + THKR + EK +C +CGK F S LT H K H+ E
Sbjct: 250 RDKLYKREECSKAFNLSSHITTHTIIHTGENPYKREECDKAFNQSLTLTTHKIIHTREKLNEYKECGKAFNQSSHLTRHKIIHTGEKPYKCEECGKAFNQSSHLTRHKIIHTGEKPYRCEECGKAFRQSSHLTTHKIIHTGEKPYKCEECGKAFNKSSHLTRHKSIHTGEKPYQCEKCGKASNQSSNLTEHKNIHTEEKPYKCEECGKAFNQFSNLTTHKRIHTGEKPYKCEECGKAFNQSSI----LTTHKR------IHTGEKSYKCEECGKAFYRSSKLTEHKKIHTGE 531 HSP 5 Score: 174.481 bits (441), Expect = 6.217e-46 Identity = 115/296 (38.85%), Postives = 154/296 (52.03%), Query Frame = -3
Query: 1171 IRKERGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEKTFKCEECGNCFQRKELFKVHTRIHTKEKSFKCEECGKCFPKKGSLKVYMRMHTGQKLFKCIECGKCFSVKRRLNRHLYLHSEIKPFKCEKCGKQFSQRGYLIQHSYIHNKINSFKCKECGRCFAHKNGFDYHIKTHKRKKLLLQLIEREKPLQCIKCGKCFNSVSCLTAHVKSHSEE 2058
+R R + FK KE GK+F +L +H I T +KC+DCGK F S T+H +H K + CEECGK +L H ++T K +K E+C K F + + H IHT E +K EEC F + H IHT+EK + +ECGK F + L + +HTG+K +KC ECGK F+ L RH +H+ KP++CE+CGK F Q +L H IH +KC+ECG+ F + H H EKP QC KCGK N S LT H H+EE
Sbjct: 162 VRHTRKKPFKYKEFGKSFCIFSNLTQHKIICTRVNFYKCEDCGKAFNGSSIFTKHKRIHIGEKSYICEECGKACNQFTNLTTHKIIYTRDKLYKREECSKAFNLSSHITTHTIIHTGENPYKREECDKAFNQSLTLTTHKIIHTREKLNEYKECGKAFNQSSHLTRHKIIHTGEKPYKCEECGKAFNQSSHLTRHKIIHTGEKPYRCEECGKAFRQSSHLTTHKIIHTGEKPYKCEECGKAFNKSSHLTRHKSIHT----------GEKPYQCEKCGKASNQSSNLTEHKNIHTEE 447 HSP 6 Score: 168.703 bits (426), Expect = 4.863e-44 Identity = 112/299 (37.46%), Postives = 163/299 (54.52%), Query Frame = -3
Query: 1171 NNLIRKERGQSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEKTFKCEECGNCFQRKELFKVHTRIHTKEKSFKCEECGKCFPKKGSLKVYMRMHTGQKLFKCIECGKCFSVKRRLNRHLYLHSEIKPFKCEKCGKQFSQRGYLIQHSYIHNKINSFKCKECGRCFAHKNGFDYHIKTHKRKKLLLQLIEREKPLQCIKCGKCFNSVSCLTAHVKSHSEE 2067
N + + + F+C + K F +L H HT ++PFK ++ GK F LTQH I+ + + +KCE+CGK F + KH ++H +KS+ CE+CGK +L HK I+T++K +K EEC F HT IHT E +K EEC K F + +L + +HT +KL + ECGK F+ L RH +H+ KP+KCE+CGK F+Q +L +H IH ++C+ECG+ F + H+ THK + EKP +C +CGK FN S LT H H+ E
Sbjct: 131 NQCLPTTQSKIFQCDKYMKIFHKFSNLNGHKVRHTRKKPFKYKEFGKSFCIFSNLTQHKIICTRVNFYKCEDCGKAFNGSSIFTKHKRIHIGEKSYICEECGKACNQFTNLTTHKIIYTRDKLYKREECSKAFNLSSHITTHTIIHTGENPYKREECDKAFNQSLTLTTHKIIHTREKLNEYKECGKAFNQSSHLTRHKIIHTGEKPYKCEECGKAFNQSSHLTRHKIIHTGEKPYRCEECGKAFRQSS----HLTTHK------IIHTGEKPYKCEECGKAFNKSSHLTRHKSIHTGE 419 HSP 7 Score: 131.724 bits (330), Expect = 9.628e-32 Identity = 64/142 (45.07%), Postives = 92/142 (64.79%), Query Frame = -3
Query: 1615 QSFKCKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFAQSDGLTQHLIVHSSIKPFKCEECGKNFKTNGSLKKHIKLHTEKKSFKCEKCGKCFKTNGSLKQHKTIHTKEKTFKCEECGNCFQRKELFKVHTRIHTKEKS 2040
+S+KC+ECGKAF + L H +IHTGE+P+ C++CGK F S L H ++H+ KP++CEECGK F + L +H ++HT +K ++CEKCGK F + +L HK IHT EK +K + C + F+ F H R + EKS
Sbjct: 504 KSYKCEECGKAFYRSSKLTEHKKIHTGEKPYTCEECGKAFNHSSHLATHKVIHTGEKPYQCEECGKAFNQSSHLTRHKRIHTGEKPYQCEKCGKAFNQSSNLTGHKKIHTGEKLYKPKRCNSDFENTSKFSKHKRNYAGEKS 645 The following BLAST results are available for this feature:
BLAST of TCONS_00055668 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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