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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055660 ID=TCONS_00055660|Name=TCONS_00055660|organism=Clytia hemisphaerica|type=transcript|length=811bp
ACAAACGGAATGTAGTATCTGGTATTGTCCACAGAATATACAGAGCTTGC
AGTCACTGGCGCCACTTTCATGAAAGCCTTCAAAGGGCTAAGTCGATGTT
AGAGAAGAACCAGTATCCACCAGAATTTTATGACCCAATCATTTCTTCAA
CCATCgagaaaatcatttcaaaagaaaacgagCAATTGTTAACGTCAAAC
CAGGAGCCAGAACAAAAGCAAGCTAAAGTAAAGTTCTTCGTGGAATATCG
TGGTAAAGTGACTGATAACTTTATTAACCATCTTCACAAGTGTGGAGCAC
CAGTTCAACCAGTGGTCACACTTAGAAAGCTCAAAACAACCCTTCATAGC
CTTAAACCTTCTATCAAAAGAGAACTGAAAAGTGGAGtgatttataaaat
ttcttGTCCAAGATGTAATTCTTGCTATGTTGGGCAAACTGCTCGACACG
TGATCACCCGCTTTNAAACAACCCTTCCTAGCCTTAAACCTTCTATCAAA
AGAGAACTGAAAAGTGGAGtgatttataaaatttcttGTCCAAGATGTAA
TTCTTGCTATGTTGGGCAAACTGCTCGACACGTGATCACCCGCTTTAAAG
AACACAGAAATAGAAAGGAAGGGCCAGTAAGGATGCATTTCATGAGATGT
TGTAAACGAAAACCTGAATTTAAGGAACTTGAAATTTTAGGCTCTACAAT
CAAAGGAGAAAGAAGTACACTTATTGACAATTGAGGCACTATTTATTAGG
GAAATAAAACCAGACCTCAACACCAAGGATGAGTTTAAAAGCAGACAGCT
GCTCATTAAGA Run BLAST on NCBI protein sequence of TCONS_00055660-protein >TCONS_00055660-protein ID=TCONS_00055660-protein|Name=TCONS_00055660-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
KRNVVSGIVHRIYRACSHWRHFHESLQRAKSMLEKNQYPPEFYDPIISST
IEKIISKENEQLLTSNQEPEQKQAKVKFFVEYRGKVTDNFINHLHKCGAP
VQPVVTLRKLKTTLHSLKPSIKRELKSGVIYKISCPRCNSCYVGQTARHV
ITRFXTTLPSLKPSIKRELKSGVIYKISCPRCNSCYVGQTARHVITRFKE
HRNRKEGPVRMHFMRCCKRKPEFKELEILGSTIKGERSTLIDN Run BLAST on NCBI transcript from alignment at scaffold_255:87478..88288 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055660 ID=TCONS_00055660|Name=TCONS_00055660|organism=Clytia hemisphaerica|type=transcript|length=811bp|location=Sequence derived from alignment at scaffold_255:87478..88288 (Clytia hemisphaerica)
TCTTAATGAGCAGCTGTCTGCTTTTAAACTCATCCTTGGTGTTGAGGTCT
GGTTTTATTTCCCTAATAAATAGTGCCTCAATTGTCAATAAGTGTACTTC
TTTCTCCTTTGATTGTAGAGCCTAAAATTTCAAGTTCCTTAAATTCAGGT
TTTCGTTTACAACATCTCATGAAATGCATCCTTACTGGCCCTTCCTTTCT
ATTTCTGTGTTCTTTAAAGCGGGTGATCACGTGTCGAGCAGTTTGCCCAA
CATAGCAAGAATTACATCTTGGACaagaaattttataaatcaCTCCACTT
TTCAGTTCTCTTTTGATAGAAGGTTTAAGGCTAGGAAGGGTTGTTTNAAA
GCGGGTGATCACGTGTCGAGCAGTTTGCCCAACATAGCAAGAATTACATC
TTGGACaagaaattttataaatcaCTCCACTTTTCAGTTCTCTTTTGATA
GAAGGTTTAAGGCTATGAAGGGTTGTTTTGAGCTTTCTAAGTGTGACCAC
TGGTTGAACTGGTGCTCCACACTTGTGAAGATGGTTAATAAAGTTATCAG
TCACTTTACCACGATATTCCACGAAGAACTTTACTTTAGCTTGCTTTTGT
TCTGGCTCCTGGTTTGACGTTAACAATTGctcgttttcttttgaaatgat
tttctcGATGGTTGAAGAAATGATTGGGTCATAAAATTCTGGTGGATACT
GGTTCTTCTCTAACATCGACTTAGCCCTTTGAAGGCTTTCATGAAAGTGG
CGCCAGTGACTGCAAGCTCTGTATATTCTGTGGACAATACCAGATACTAC
ATTCCGTTTGT Coding sequence (CDS) from alignment at scaffold_255:87478..88288 >TCONS_00055660 ID=TCONS_00055660|Name=TCONS_00055660|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_255:87478..88288 (Clytia hemisphaerica)
TCAATTGTCAATAAGTGTACTTCTTTCTCCTTTGATTGTAGAGCCTAAAA
TTTCAAGTTCCTTAAATTCAGGTTTTCGTTTACAACATCTCATGAAATGC
ATCCTTACTGGCCCTTCCTTTCTATTTCTGTGTTCTTTAAAGCGGGTGAT
CACGTGTCGAGCAGTTTGCCCAACATAGCAAGAATTACATCTTGGACaag
aaattttataaatcaCTCCACTTTTCAGTTCTCTTTTGATAGAAGGTTTA
AGGCTAGGAAGGGTTGTTTNAAAGCGGGTGATCACGTGTCGAGCAGTTTG
CCCAACATAGCAAGAATTACATCTTGGACaagaaattttataaatcaCTC
CACTTTTCAGTTCTCTTTTGATAGAAGGTTTAAGGCTATGAAGGGTTGTT
TTGAGCTTTCTAAGTGTGACCACTGGTTGAACTGGTGCTCCACACTTGTG
AAGATGGTTAATAAAGTTATCAGTCACTTTACCACGATATTCCACGAAGA
ACTTTACTTTAGCTTGCTTTTGTTCTGGCTCCTGGTTTGACGTTAACAAT
TGctcgttttcttttgaaatgattttctcGATGGTTGAAGAAATGATTGG
GTCATAAAATTCTGGTGGATACTGGTTCTTCTCTAACATCGACTTAGCCC
TTTGAAGGCTTTCATGAAAGTGGCGCCAGTGACTGCAAGCTCTGTATATT
CTGTGGACAATACCAGATACTACATTCCGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055660-exon-scaffold_255-1491911889:87478..88288 | TCONS_00055660-exon-scaffold_255-1491911889:87478..88288 | Clytia hemisphaerica | exon |
| TCONS_00055660-exon-scaffold_255-1510915933:87478..88288 | TCONS_00055660-exon-scaffold_255-1510915933:87478..88288 | Clytia hemisphaerica | exon |
| TCONS_00055660-exon-scaffold_255-1575043694:87478..88288 | TCONS_00055660-exon-scaffold_255-1575043694:87478..88288 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_255 | supercontig | scaffold_255:87478..88288 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000305 | GIY-YIG_SF |
Blast
The following BLAST results are available for this feature:
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