TCONS_00055660 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055660
Unique NameTCONS_00055660
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055660 ID=TCONS_00055660|Name=TCONS_00055660|organism=Clytia hemisphaerica|type=transcript|length=811bp
ACAAACGGAATGTAGTATCTGGTATTGTCCACAGAATATACAGAGCTTGC
AGTCACTGGCGCCACTTTCATGAAAGCCTTCAAAGGGCTAAGTCGATGTT
AGAGAAGAACCAGTATCCACCAGAATTTTATGACCCAATCATTTCTTCAA
CCATCgagaaaatcatttcaaaagaaaacgagCAATTGTTAACGTCAAAC
CAGGAGCCAGAACAAAAGCAAGCTAAAGTAAAGTTCTTCGTGGAATATCG
TGGTAAAGTGACTGATAACTTTATTAACCATCTTCACAAGTGTGGAGCAC
CAGTTCAACCAGTGGTCACACTTAGAAAGCTCAAAACAACCCTTCATAGC
CTTAAACCTTCTATCAAAAGAGAACTGAAAAGTGGAGtgatttataaaat
ttcttGTCCAAGATGTAATTCTTGCTATGTTGGGCAAACTGCTCGACACG
TGATCACCCGCTTTNAAACAACCCTTCCTAGCCTTAAACCTTCTATCAAA
AGAGAACTGAAAAGTGGAGtgatttataaaatttcttGTCCAAGATGTAA
TTCTTGCTATGTTGGGCAAACTGCTCGACACGTGATCACCCGCTTTAAAG
AACACAGAAATAGAAAGGAAGGGCCAGTAAGGATGCATTTCATGAGATGT
TGTAAACGAAAACCTGAATTTAAGGAACTTGAAATTTTAGGCTCTACAAT
CAAAGGAGAAAGAAGTACACTTATTGACAATTGAGGCACTATTTATTAGG
GAAATAAAACCAGACCTCAACACCAAGGATGAGTTTAAAAGCAGACAGCT
GCTCATTAAGA
Run BLAST on NCBI

protein sequence of TCONS_00055660-protein

>TCONS_00055660-protein ID=TCONS_00055660-protein|Name=TCONS_00055660-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
KRNVVSGIVHRIYRACSHWRHFHESLQRAKSMLEKNQYPPEFYDPIISST
IEKIISKENEQLLTSNQEPEQKQAKVKFFVEYRGKVTDNFINHLHKCGAP
VQPVVTLRKLKTTLHSLKPSIKRELKSGVIYKISCPRCNSCYVGQTARHV
ITRFXTTLPSLKPSIKRELKSGVIYKISCPRCNSCYVGQTARHVITRFKE
HRNRKEGPVRMHFMRCCKRKPEFKELEILGSTIKGERSTLIDN
Run BLAST on NCBI

transcript from alignment at scaffold_255:87478..88288

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055660 ID=TCONS_00055660|Name=TCONS_00055660|organism=Clytia hemisphaerica|type=transcript|length=811bp|location=Sequence derived from alignment at scaffold_255:87478..88288 (Clytia hemisphaerica)
TCTTAATGAGCAGCTGTCTGCTTTTAAACTCATCCTTGGTGTTGAGGTCT GGTTTTATTTCCCTAATAAATAGTGCCTCAATTGTCAATAAGTGTACTTC TTTCTCCTTTGATTGTAGAGCCTAAAATTTCAAGTTCCTTAAATTCAGGT TTTCGTTTACAACATCTCATGAAATGCATCCTTACTGGCCCTTCCTTTCT ATTTCTGTGTTCTTTAAAGCGGGTGATCACGTGTCGAGCAGTTTGCCCAA CATAGCAAGAATTACATCTTGGACaagaaattttataaatcaCTCCACTT TTCAGTTCTCTTTTGATAGAAGGTTTAAGGCTAGGAAGGGTTGTTTNAAA GCGGGTGATCACGTGTCGAGCAGTTTGCCCAACATAGCAAGAATTACATC TTGGACaagaaattttataaatcaCTCCACTTTTCAGTTCTCTTTTGATA GAAGGTTTAAGGCTATGAAGGGTTGTTTTGAGCTTTCTAAGTGTGACCAC TGGTTGAACTGGTGCTCCACACTTGTGAAGATGGTTAATAAAGTTATCAG TCACTTTACCACGATATTCCACGAAGAACTTTACTTTAGCTTGCTTTTGT TCTGGCTCCTGGTTTGACGTTAACAATTGctcgttttcttttgaaatgat tttctcGATGGTTGAAGAAATGATTGGGTCATAAAATTCTGGTGGATACT GGTTCTTCTCTAACATCGACTTAGCCCTTTGAAGGCTTTCATGAAAGTGG CGCCAGTGACTGCAAGCTCTGTATATTCTGTGGACAATACCAGATACTAC ATTCCGTTTGT

Coding sequence (CDS) from alignment at scaffold_255:87478..88288

>TCONS_00055660 ID=TCONS_00055660|Name=TCONS_00055660|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_255:87478..88288 (Clytia hemisphaerica)
TCAATTGTCAATAAGTGTACTTCTTTCTCCTTTGATTGTAGAGCCTAAAA
TTTCAAGTTCCTTAAATTCAGGTTTTCGTTTACAACATCTCATGAAATGC
ATCCTTACTGGCCCTTCCTTTCTATTTCTGTGTTCTTTAAAGCGGGTGAT
CACGTGTCGAGCAGTTTGCCCAACATAGCAAGAATTACATCTTGGACaag
aaattttataaatcaCTCCACTTTTCAGTTCTCTTTTGATAGAAGGTTTA
AGGCTAGGAAGGGTTGTTTNAAAGCGGGTGATCACGTGTCGAGCAGTTTG
CCCAACATAGCAAGAATTACATCTTGGACaagaaattttataaatcaCTC
CACTTTTCAGTTCTCTTTTGATAGAAGGTTTAAGGCTATGAAGGGTTGTT
TTGAGCTTTCTAAGTGTGACCACTGGTTGAACTGGTGCTCCACACTTGTG
AAGATGGTTAATAAAGTTATCAGTCACTTTACCACGATATTCCACGAAGA
ACTTTACTTTAGCTTGCTTTTGTTCTGGCTCCTGGTTTGACGTTAACAAT
TGctcgttttcttttgaaatgattttctcGATGGTTGAAGAAATGATTGG
GTCATAAAATTCTGGTGGATACTGGTTCTTCTCTAACATCGACTTAGCCC
TTTGAAGGCTTTCATGAAAGTGGCGCCAGTGACTGCAAGCTCTGTATATT
CTGTGGACAATACCAGATACTACATTCCGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035030XLOC_035030Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055660-proteinTCONS_00055660-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055660-exon-scaffold_255-1491911889:87478..88288TCONS_00055660-exon-scaffold_255-1491911889:87478..88288Clytia hemisphaericaexon
TCONS_00055660-exon-scaffold_255-1510915933:87478..88288TCONS_00055660-exon-scaffold_255-1510915933:87478..88288Clytia hemisphaericaexon
TCONS_00055660-exon-scaffold_255-1575043694:87478..88288TCONS_00055660-exon-scaffold_255-1575043694:87478..88288Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_255supercontigscaffold_255:87478..88288 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.809027 0.644287 1.21261 1.10977 0.403278 0.359809 0.887277 0.805626 0.589887 0.598839 0.65822 0.576901 0.546047 0.211754 0.201419 0.237846 0.265445 0.39834 1.55866 0.917775 1.18682 1.17697 0.821088 1.23807 0.130573 0.503173 1.16688 1.37218 0.371467 0.116866
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055660 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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