TCONS_00055659 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055659
Unique NameTCONS_00055659
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length201

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055659 ID=TCONS_00055659|Name=TCONS_00055659|organism=Clytia hemisphaerica|type=transcript|length=201bp
TTTGTGGATGTCATGAGGATATTCTCCGGTAAGGTAAGGTGCGTATGCAA
TTGGACGCTTGTGTATCCTTTCCAGAGCATACTGAACCATTTGTACTTGA
CAAATATTTTCGCATAATACCACGACTTCGTCCTCTTTTCTCTCATTCAA
ACAGAACTGGAGGGTTGCAGCTAGTATCGGAAGGAACCAAGCAAATAAAG
G
Run BLAST on NCBI

transcript from alignment at scaffold_255:39018..39218

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055659 ID=TCONS_00055659|Name=TCONS_00055659|organism=Clytia hemisphaerica|type=transcript|length=201bp|location=Sequence derived from alignment at scaffold_255:39018..39218 (Clytia hemisphaerica)
CCTTTATTTGCTTGGTTCCTTCCGATACTAGCTGCAACCCTCCAGTTCTG
TTTGAATGAGAGAAAAGAGGACGAAGTCGTGGTATTATGCGAAAATATTT
GTCAAGTACAAATGGTTCAGTATGCTCTGGAAAGGATACACAAGCGTCCA
ATTGCATACGCACCTTACCTTACCGGAGAATATCCTCATGACATCCACAA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035029XLOC_035029Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055659-exon-scaffold_255-1491911889:39018..39218TCONS_00055659-exon-scaffold_255-1491911889:39018..39218Clytia hemisphaericaexon
TCONS_00055659-exon-scaffold_255-1510915933:39018..39218TCONS_00055659-exon-scaffold_255-1510915933:39018..39218Clytia hemisphaericaexon
TCONS_00055659-exon-scaffold_255-1575043694:39018..39218TCONS_00055659-exon-scaffold_255-1575043694:39018..39218Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_255supercontigscaffold_255:39018..39218 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	2.11178	1.97702	2.76832	12.0015	3.59081	3.28182	18.6873	14.7484	5.00644	3.42149	0	3.15701	19.6116	25.26	0	0	0	0	8.81776	7.86964	13.5137	2.4037	7.29249	9.28737
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055659 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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