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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055654 ID=TCONS_00055654|Name=TCONS_00055654|organism=Clytia hemisphaerica|type=transcript|length=571bp
TGCAGCACAGTACaacaatcatgacgtcatcagatggtTGTTGGCCAAAG
GAGCGGATCATGAATTGAAAAACAATCGTGGTCGACGCCCTGATGAACAT
CCTGATTGTGATGGTGTTACCAAAGAAATCTTTCGATCGTTTCGTTCGTC
TtgattgaTTGATTGTTTCCATTGTTTGTTTCATCGtttccaatgacgtc
atcggttccAAATTATTTCCACattCCCAGCATGATAGCACGCATGAGAA
GTTACACCCGTCATTCTTGACGCTGTTTCTACGATTACGTTATTTATTCA
TTCCGTCTCTACAGTCTGTTTGCGTTCAAACATTACTACCTtcattttgg
cttgtttttagaTGTATTTTCACCACTTCACTAACTTGACTATTATTACG
TCAACCGTCCCTAGTTTTGGTGGCGTGTCTATTCTTACGCCCTTACGTGT
CCGCCTTATAGATTACCTTGGTTGAATATGAAAAAGAGTACAGTGCTAAA
ACTCATGTCACTATTGGTTTCGATTGGATCATTTCCCTTGTAAATATCCA
ATTCTTTTCGCTTACTCGGTG Run BLAST on NCBI transcript from alignment at scaffold_255:54807..58256+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055654 ID=TCONS_00055654|Name=TCONS_00055654|organism=Clytia hemisphaerica|type=transcript|length=3450bp|location=Sequence derived from alignment at scaffold_255:54807..58256+ (Clytia hemisphaerica)
TGCAGCACAGTACaacaatcatgacgtcatcagatggtTGTTGGCCAAAG
GAGCGGATCATGAATTGAAAAACAATCGTGGTCGACGCCCTGATGAACAT
CCTGATTGTGATGGTGTTACCAAAGAAATCTTTCGATCGTTTCGTTCGTC
Ttggtaagaaaaatatcaactttttcatgattttttagggtgggaatatt
tttaaacaatgaattaatttttttctattattgcGAGAagtgttgaaact
tttttttaattttttcaatagaagtgaaaagttatttaaaaagtcttata
aatttttcagtttgataaattttacctTTTCGGAGTTCGAATGAATGAAA
CGAATGAATTGATTTCGATAttttgattgagatttttcattgcattggAG
CAGACATATTTTGGAGACGGTTGAAATTTGCAAATAGTTGTTTGTTTGTG
AAATGTTTTCTCGGGTTGTTATGGATTTATTTTTTGGTGAAGaatagact
gggaatccagtcgtttataacgtttttgttgaaagtgggaaatttttatg
tcgtgATAtagttaaaataaactatattgatgctcctgtccggtttgtgt
aatttacgatgcgcgatccaacgattcacgatgcgcgatgcacgatccat
gcatatattatgttaattattctaattatgcatttacagNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNaatcgttggatcgcgcatcgtaaattacacaaac
cggctcctgtcaagttttctacttcctattttttactagttaagtcgtct
agcatgctagactaggTGAAGAAAGAAATtgtcgttttttttattttatc
gtaCGTCTCTTATGATATTGTTCAtgtgtttcaaatgtttttcattcgat
tatttatttttcagattgaTTGATTGTTTCCATTGTTTGTTTCATCGttt
ccaatgacgtcatcggttccAAATTATTTCCACGTAAGTATATTTAATCA
TTTACTTGGTTTCCGAATGAAAGCCTAAAGCCTAAAATATTTCTGCATac
cagaaattttttttgaaaaaagtgaatcCATTCAAAAAACTTAGAAAGGA
GGGCTTggttagcctgtaccaaactcgtCTTGGTGGACTGAAAAGACCAA
GGGAAATTCAGTATGATGTACAGTTCGGACTTTTATGTGAATGAGACGAA
TCCACGCAAGTCTTGGTTGTAAAGAGTTGAATTATCTTCGATTAGTCGAA
TAAATGCAATTGTTTCTTTCTGTAGTAAAAATAGCGCCTGAAGCCTATAA
AGGTTATACCTCAAAGGAGTTaactagttcttataaaaagactcCGTATT
CcgcgtttttcaaacttttccacCACATCAGATTTTCAGCATTCTCATTA
GCcactttttaccatttttataaaaactatttATTCATCTTCGAGTCAGC
AAGTTTTGTAGTGCAATTAACCtcctaaattttcaatttttttatttcta
gattCCCAGCATGATAGCACGCATGAGAAGTTACACCCGTCATTCTTGAC
GCTGTTTCTACGATTACGTTATTTATTCATTCCGTCTCTACAGTCTGTTT
GCGTTCAAACATTACTACCTtcattttggcttgtttttagaTGTATTTTC
ACCACTTCACTAACTTGACTATTATTACGTCAACCGTCCCTAGTTTTGGT
GGCGTGTCTATTCTTACGCCCTTACGTGTCCGCCTTATAGATTACCTTGG
TTGAATATGAAAAAGAGTACAGTGCTAAAACTCATGTCACTATTGGTTTC
GATTGGATCATTTCCCTTGTAAATATCCAATTCTTTTCGCTTACTCGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055654-exon-scaffold_255-1491911889:54807..54959 | TCONS_00055654-exon-scaffold_255-1491911889:54807..54959 | Clytia hemisphaerica | exon |
| TCONS_00055654-exon-scaffold_255-1510915933:54807..54959 | TCONS_00055654-exon-scaffold_255-1510915933:54807..54959 | Clytia hemisphaerica | exon |
| TCONS_00055654-exon-scaffold_255-1575043694:54807..54959 | TCONS_00055654-exon-scaffold_255-1575043694:54807..54959 | Clytia hemisphaerica | exon |
| TCONS_00055654-exon-scaffold_255-1491911889:57321..57389 | TCONS_00055654-exon-scaffold_255-1491911889:57321..57389 | Clytia hemisphaerica | exon |
| TCONS_00055654-exon-scaffold_255-1510915933:57321..57389 | TCONS_00055654-exon-scaffold_255-1510915933:57321..57389 | Clytia hemisphaerica | exon |
| TCONS_00055654-exon-scaffold_255-1575043694:57321..57389 | TCONS_00055654-exon-scaffold_255-1575043694:57321..57389 | Clytia hemisphaerica | exon |
| TCONS_00055654-exon-scaffold_255-1491911889:57908..58256 | TCONS_00055654-exon-scaffold_255-1491911889:57908..58256 | Clytia hemisphaerica | exon |
| TCONS_00055654-exon-scaffold_255-1510915933:57908..58256 | TCONS_00055654-exon-scaffold_255-1510915933:57908..58256 | Clytia hemisphaerica | exon |
| TCONS_00055654-exon-scaffold_255-1575043694:57908..58256 | TCONS_00055654-exon-scaffold_255-1575043694:57908..58256 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_255 | supercontig | scaffold_255:54807..58256 + |
Blast
The following BLAST results are available for this feature:
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