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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055643 ID=TCONS_00055643|Name=TCONS_00055643|organism=Clytia hemisphaerica|type=transcript|length=2350bp
TTGATTGATCAAGCCAAACCATGATCGGATATCGTGGATGTTGCGAGGGG
TCGGGAAGTCCTCAATTGCTTCGAAGAATTTTTTACACGGTTTGACATTG
TCCAGAGTTATTTCAAAGCCAGCAAACGTGACACAATCTTGGGCGAATTG
GACTTTTTCAGGATTGAGTGTGACACCATTTTCTCCCCAATAAATCTAAG
TAGTCAACAGCTTGAAAGAAACTAGCTTCAATGTCATTTGCCCAGAGTAG
TGAGTCATCGATGCATTTGGTCTTGTCTGGGACGTTCAAGACTATTTCAT
CCAGTCTTCTGGTATATCCGTCACCAGAAGCGATGTAGCCTTGGGGTGCA
ACCTTGTATCTGTATCTCCCCCAGGGGGTGATGAAGGTGGTCAGATGACG
ATGTTCTGGTTCAAGTGGGATGCTGTGGTAGCCATTCCAACAATCAAAGA
CAGTCTTCTTCTTTCCGGAAGGAACTAGGCAGGCCTGGTGAAATGGTGAC
ATTGTGTGATGGGTCTCCCTGGTGGCATTTGCATTAAGCGCCTGGAAGTC
AACGGTTCTCCGAGGTGTGCCATCCTTCTTTGCACAGACCACCATTCGAT
GGCACCAGGTAACGGGTTCCCCGACTGGGACAGGCTCTATTACAGTAATT
GTATGACCAATTCTGGGCCAGTGATCTTGGTGGCTGTGACCTAGTCTTGC
CATCGAACTGTGAAGTAAGACCAATCTTCACTGGAACCGCCAGTTGTTAT
TGTAGGACGTTTCACTTTCTCAACACGTGCAGTTTCTAGAACAGCAAGTC
CTTGTTGGGGCGTGTGGACACCAGATGCGTGAATCTTGAGACGTGTGCTT
GCAAGATCAGGCTCAGTGTCTATTGTCGCATAGTCACATTCAGGAAAAGG
GCATTGGACCACAACCATGATTCAAGGTGTCAGATTGTGTAAGATAAAAA
CTCTCTAACCTGTGTAGTTCGGGGCTAACCCGATTTGTGAACGTGTTTTC
TTGACAGGTGAGCGTTTAATGTTGGTCCAGACACCAGAGTGAAAACGTAA
CGTCTTGGTGTTGCACAAACAAATAAGGTAATAAACCTTATACCTGTATA
GTTCGGGGCTAGCCCGATGTGGAGAAGCTTTGGGTGGCAGTTATAGCCGG
TTGTGTTGGACCAAGCAGATGCAACCACAAAGTTGTAACAACAGAGTTGC
CAGTTGACGTGATATAGCAGAGTTGCCAGTTGATGTGACGTAGCAGAGTT
GCCAGTTGATGTGACGTAGCAGAGTTGCCAGTTGACGTGATATAGCAGAG
TTGCCAGTTGATGTGACGTAGCAGAGTTGCCAGTTGATGTGACATAGCAG
AGTTGCTAGTTGGAGTGTGTAGCAGAGTTGCCAGTTAATGAAAAGTGAGT
GCAGAGATGCAAGACTTGTGTATAGCCAGTGTGTCGTTGGAAGCCAGCTG
GTTGGGTATAAATGGtgatgtcttcttttttaattgagatcgccagcgct
ttcaaatgttttgactttgcaatgtcttcattttgaatatggtgttcGGA
TCGTTCGCTGACTggaaccttttttatatcaactacttgtgatatgtttc
tattgattttgaattaatgagctaataacatgtttcaatgaaattttgtg
tgatggaagataacaggtttttaaaagaggaaagtcattttcagaactct
tcttgcgcaaattttctcatcaaaaacattttctctcgcgatcagccatg
tttacaaaaatccagaatttcttgatttttttacttggcaTCGTTCAAAA
TCGGTTCGGTGTTGTTCAGTGCTccgtttatttttaatttttggagagat
tgcaagggatagtttgaggattctgctgcacaaaggaagttctacagaag
tttgtttttggttgtttttttcaagtaaaaagaCGCTCGTTCGTGCACTG
GTGACTCTACTCTAGActgtttgttttgatgaattagctagtctggagat
ccatactctctattcaaacttacaccacataagcaaaaatcccatcagaa
gctactcattgagagtagtatggtatttttgacccagtttgaatttgttt
acatttggtttgaaatttgtgccaaaaaagccgttgataacATAAGGTTG
GTTAGCCAATCAGGTTCGCGCACTTCcaataatcaaaacaataatatcac
gtgatttcaacaattgtttaacagccaatagaattctgcgaccAGATTTG
GCAtctacaaaaatacccggctactctgttatttctatattattattcgt
tttaactaaatgctatacttcaaaatcacacgaacagagtagacgggtct Run BLAST on NCBI protein sequence of TCONS_00055643-protein >TCONS_00055643-protein ID=TCONS_00055643-protein|Name=TCONS_00055643-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MARLGHSHQDHWPRIGHTITVIEPVPVGEPVTWCHRMVVCAKKDGTPRRT
VDFQALNANATRETHHTMSPFHQACLVPSGKKKTVFDCWNGYHSIPLEPE
HRHLTTFITPWGRYRYKVAPQGYIASGDGYTRRLDEIVLNVPDKTKCIDD
SLLWANDIEASFFQAVDYLDLLGRKWCHTQS Run BLAST on NCBI transcript from alignment at scaffold_253:1179488..1181837 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055643 ID=TCONS_00055643|Name=TCONS_00055643|organism=Clytia hemisphaerica|type=transcript|length=2350bp|location=Sequence derived from alignment at scaffold_253:1179488..1181837 (Clytia hemisphaerica)
agacccgtctactctgttcgtgtgattttgaagtatagcatttagttaaa
acgaataataatatagaaataacagagtagccgggtatttttgtagaTGC
CAAATCTggtcgcagaattctattggctgttaaacaattgttgaaatcac
gtgatattattgttttgattattgGAAGTGCGCGAACCTGATTGGCTAAC
CAACCTTATgttatcaacggcttttttggcacaaatttcaaaccaaatgt
aaacaaattcaaactgggtcaaaaataccatactactctcaatgagtagc
ttctgatgggatttttgcttatgtggtgtaagtttgaatagagagtatgg
atctccagactagctaattcatcaaaacaaacagTCTAGAGTAGAGTCAC
CAGTGCACGAACGAGCGtctttttacttgaaaaaaacaaccaaaaacaaa
cttctgtagaacttcctttgtgcagcagaatcctcaaactatcccttgca
atctctccaaaaattaaaaataaacggAGCACTGAACAACACCGAACCGA
TTTTGAACGAtgccaagtaaaaaaatcaagaaattctggatttttgtaaa
catggctgatcgcgagagaaaatgtttttgatgagaaaatttgcgcaaga
agagttctgaaaatgactttcctcttttaaaaacctgttatcttccatca
cacaaaatttcattgaaacatgttattagctcattaattcaaaatcaata
gaaacatatcacaagtagttgatataaaaaaggttccAGTCAGCGAACGA
TCCgaacaccatattcaaaatgaagacattgcaaagtcaaaacatttgaa
agcgctggcgatctcaattaaaaaagaagacatcaCCATTTATACCCAAC
CAGCTGGCTTCCAACGACACACTGGCTATACACAAGTCTTGCATCTCTGC
ACTCACTTTTCATTAACTGGCAACTCTGCTACACACTCCAACTAGCAACT
CTGCTATGTCACATCAACTGGCAACTCTGCTACGTCACATCAACTGGCAA
CTCTGCTATATCACGTCAACTGGCAACTCTGCTACGTCACATCAACTGGC
AACTCTGCTACGTCACATCAACTGGCAACTCTGCTATATCACGTCAACTG
GCAACTCTGTTGTTACAACTTTGTGGTTGCATCTGCTTGGTCCAACACAA
CCGGCTATAACTGCCACCCAAAGCTTCTCCACATCGGGCTAGCCCCGAAC
TATACAGGTATAAGGTTTATTACCTTATTTGTTTGTGCAACACCAAGACG
TTACGTTTTCACTCTGGTGTCTGGACCAACATTAAACGCTCACCTGTCAA
GAAAACACGTTCACAAATCGGGTTAGCCCCGAACTACACAGGTTAGAGAG
TTTTTATCTTACACAATCTGACACCTTGAATCATGGTTGTGGTCCAATGC
CCTTTTCCTGAATGTGACTATGCGACAATAGACACTGAGCCTGATCTTGC
AAGCACACGTCTCAAGATTCACGCATCTGGTGTCCACACGCCCCAACAAG
GACTTGCTGTTCTAGAAACTGCACGTGTTGAGAAAGTGAAACGTCCTACA
ATAACAACTGGCGGTTCCAGTGAAGATTGGTCTTACTTCACAGTTCGATG
GCAAGACTAGGTCACAGCCACCAAGATCACTGGCCCAGAATTGGTCATAC
AATTACTGTAATAGAGCCTGTCCCAGTCGGGGAACCCGTTACCTGGTGCC
ATCGAATGGTGGTCTGTGCAAAGAAGGATGGCACACCTCGGAGAACCGTT
GACTTCCAGGCGCTTAATGCAAATGCCACCAGGGAGACCCATCACACAAT
GTCACCATTTCACCAGGCCTGCCTAGTTCCTTCCGGAAAGAAGAAGACTG
TCTTTGATTGTTGGAATGGCTACCACAGCATCCCACTTGAACCAGAACAT
CGTCATCTGACCACCTTCATCACCCCCTGGGGGAGATACAGATACAAGGT
TGCACCCCAAGGCTACATCGCTTCTGGTGACGGATATACCAGAAGACTGG
ATGAAATAGTCTTGAACGTCCCAGACAAGACCAAATGCATCGATGACTCA
CTACTCTGGGCAAATGACATTGAAGCTAGTTTCTTTCAAGCTGTTGACTA
CTTAGATTTATTGGGGAGAAAATGGTGTCACACTCAATCCTGAAAAAGTC
CAATTCGCCCAAGATTGTGTCACGTTTGCTGGCTTTGAAATAACTCTGGA
CAATGTCAAACCGTGTAAAAAATTCTTCGAAGCAATTGAGGACTTCCCGA
CCCCTCGCAACATCCACGATATCCGATCATGGTTTGGCTTGATCAATCAA
Coding sequence (CDS) from alignment at scaffold_253:1179488..1181837 >TCONS_00055643 ID=TCONS_00055643|Name=TCONS_00055643|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at scaffold_253:1179488..1181837 (Clytia hemisphaerica)
ATGGCAAGACTAGGTCACAGCCACCAAGATCACTGGCCCAGAATTGGTCA
TACAATTACTGTAATAGAGCCTGTCCCAGTCGGGGAACCCGTTACCTGGT
GCCATCGAATGGTGGTCTGTGCAAAGAAGGATGGCACACCTCGGAGAACC
GTTGACTTCCAGGCGCTTAATGCAAATGCCACCAGGGAGACCCATCACAC
AATGTCACCATTTCACCAGGCCTGCCTAGTTCCTTCCGGAAAGAAGAAGA
CTGTCTTTGATTGTTGGAATGGCTACCACAGCATCCCACTTGAACCAGAA
CATCGTCATCTGACCACCTTCATCACCCCCTGGGGGAGATACAGATACAA
GGTTGCACCCCAAGGCTACATCGCTTCTGGTGACGGATATACCAGAAGAC
TGGATGAAATAGTCTTGAACGTCCCAGACAAGACCAAATGCATCGATGAC
TCACTACTCTGGGCAAATGACATTGAAGCTAGTTTCTTTCAAGCTGTTGA
CTACTTAGATTTATTGGGGAGAAAATGGTGTCACACTCAATCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055643-exon-scaffold_253-1491911889:1179488..1181837 | TCONS_00055643-exon-scaffold_253-1491911889:1179488..1181837 | Clytia hemisphaerica | exon |
| TCONS_00055643-exon-scaffold_253-1510915933:1179488..1181837 | TCONS_00055643-exon-scaffold_253-1510915933:1179488..1181837 | Clytia hemisphaerica | exon |
| TCONS_00055643-exon-scaffold_253-1575043694:1179488..1181837 | TCONS_00055643-exon-scaffold_253-1575043694:1179488..1181837 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:1179488..1181837 . |
Blast
The following BLAST results are available for this feature:
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