TCONS_00055619 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055619
Unique NameTCONS_00055619
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length668

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055619 ID=TCONS_00055619|Name=TCONS_00055619|organism=Clytia hemisphaerica|type=transcript|length=668bp
AGATCAACGAAGTTTCTTCAGCTGCAAACGAATTTGAAGACTTGAAGAAC
AATGGCTCTGTGATCCAAGACGAGCTGTATGGAAAAGTAACACAGCTTGA
AGAAACTTTATCAGACCGCGAATCAGAATTGAGTAGACTTCGTGAGGACT
TGGAAGGAGCCAACTTGGCTGTCGAGAATAGCAAGGAGACTATAAACCAT
CTCACTTTACAAATAGACGAAATGAAGAAAGGAAAAGACACGCTGGAAGA
GGAAGTAGCTCAAAGATCGAACGCATTTTCAGAAATGGAAGAATATCTTT
CTGAAACGTCGTCAGAAAAAGATAGTGAAATTGAGAATCTGAAAGAACAA
CTTGCTGTTTTCGAGAAGGAAAAGCAAGAAATGGTCGACTCACAGAAAGA
ATTCAAGAAGAAAGTCTCTAAGAACTTCAAGGAAAAATTATCTGAAATGA
GTGAAAAGGAGACCAATTTGAAATCTGAATTAGAAGGGGAAAAAACATCG
AACGCTTCACTGAAAGAAGATTTGGCTTCGAAAGAAAACGAAATGAACGT
ACTGAACGATCAATTGTCTGAGACAAAGCAGAAGTTAGACGACATGTCAC
AATCTGTTTCAACCTTGGAAGAACAATTGAAAATCTCCGAATTGTCGATC
AATTTCTCAGTGGAAGAG
Run BLAST on NCBI

protein sequence of TCONS_00055619-protein

>TCONS_00055619-protein ID=TCONS_00055619-protein|Name=TCONS_00055619-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
INEVSSAANEFEDLKNNGSVIQDELYGKVTQLEETLSDRESELSRLREDL
EGANLAVENSKETINHLTLQIDEMKKGKDTLEEEVAQRSNAFSEMEEYLS
ETSSEKDSEIENLKEQLAVFEKEKQEMVDSQKEFKKKVSKNFKEKLSEMS
EKETNLKSELEGEKTSNASLKEDLASKENEMNVLNDQLSETKQKLDDMSQ
SVSTLEEQLKISELSINFSVEE
Run BLAST on NCBI

transcript from alignment at scaffold_253:598413..599080

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055619 ID=TCONS_00055619|Name=TCONS_00055619|organism=Clytia hemisphaerica|type=transcript|length=668bp|location=Sequence derived from alignment at scaffold_253:598413..599080 (Clytia hemisphaerica)
CTCTTCCACTGAGAAATTGATCGACAATTCGGAGATTTTCAATTGTTCTT
CCAAGGTTGAAACAGATTGTGACATGTCGTCTAACTTCTGCTTTGTCTCA
GACAATTGATCGTTCAGTACGTTCATTTCGTTTTCTTTCGAAGCCAAATC
TTCTTTCAGTGAAGCGTTCGATGTTTTTTCCCCTTCTAATTCAGATTTCA
AATTGGTCTCCTTTTCACTCATTTCAGATAATTTTTCCTTGAAGTTCTTA
GAGACTTTCTTCTTGAATTCTTTCTGTGAGTCGACCATTTCTTGCTTTTC
CTTCTCGAAAACAGCAAGTTGTTCTTTCAGATTCTCAATTTCACTATCTT
TTTCTGACGACGTTTCAGAAAGATATTCTTCCATTTCTGAAAATGCGTTC
GATCTTTGAGCTACTTCCTCTTCCAGCGTGTCTTTTCCTTTCTTCATTTC
GTCTATTTGTAAAGTGAGATGGTTTATAGTCTCCTTGCTATTCTCGACAG
CCAAGTTGGCTCCTTCCAAGTCCTCACGAAGTCTACTCAATTCTGATTCG
CGGTCTGATAAAGTTTCTTCAAGCTGTGTTACTTTTCCATACAGCTCGTC
TTGGATCACAGAGCCATTGTTCTTCAAGTCTTCAAATTCGTTTGCAGCTG
AAGAAACTTCGTTGATCT

Coding sequence (CDS) from alignment at scaffold_253:598413..599080

>TCONS_00055619 ID=TCONS_00055619|Name=TCONS_00055619|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_253:598413..599080 (Clytia hemisphaerica)
CTCTTCCACTGAGAAATTGATCGACAATTCGGAGATTTTCAATTGTTCTT
CCAAGGTTGAAACAGATTGTGACATGTCGTCTAACTTCTGCTTTGTCTCA
GACAATTGATCGTTCAGTACGTTCATTTCGTTTTCTTTCGAAGCCAAATC
TTCTTTCAGTGAAGCGTTCGATGTTTTTTCCCCTTCTAATTCAGATTTCA
AATTGGTCTCCTTTTCACTCATTTCAGATAATTTTTCCTTGAAGTTCTTA
GAGACTTTCTTCTTGAATTCTTTCTGTGAGTCGACCATTTCTTGCTTTTC
CTTCTCGAAAACAGCAAGTTGTTCTTTCAGATTCTCAATTTCACTATCTT
TTTCTGACGACGTTTCAGAAAGATATTCTTCCATTTCTGAAAATGCGTTC
GATCTTTGAGCTACTTCCTCTTCCAGCGTGTCTTTTCCTTTCTTCATTTC
GTCTATTTGTAAAGTGAGATGGTTTATAGTCTCCTTGCTATTCTCGACAG
CCAAGTTGGCTCCTTCCAAGTCCTCACGAAGTCTACTCAATTCTGATTCG
CGGTCTGATAAAGTTTCTTCAAGCTGTGTTACTTTTCCATACAGCTCGTC
TTGGATCACAGAGCCATTGTTCTTCAAGTCTTCAAATTCGTTTGCAGCTG
AAGAAACTTCGTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034991XLOC_034991Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055619-exon-scaffold_253-1491911889:598413..599080TCONS_00055619-exon-scaffold_253-1491911889:598413..599080Clytia hemisphaericaexon
TCONS_00055619-exon-scaffold_253-1510915933:598413..599080TCONS_00055619-exon-scaffold_253-1510915933:598413..599080Clytia hemisphaericaexon
TCONS_00055619-exon-scaffold_253-1575043694:598413..599080TCONS_00055619-exon-scaffold_253-1575043694:598413..599080Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055619-proteinTCONS_00055619-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:598413..599080 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.541055	0.678361	0.875157	0	12.8209	8.97807	6.35988	10.1405	1.17241	2.42036	1.56617	1.23545	1.79919	0.747392	1.09725	1.46012	2.20491	1.01104	0.739483	1.54763	1.49464	1.42161	0.0886233	0.402857	11.3692	11.9983	0.529924	0.452439	1.11527	0.262219
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055619 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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