TCONS_00055608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055608
Unique NameTCONS_00055608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length264

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055608 ID=TCONS_00055608|Name=TCONS_00055608|organism=Clytia hemisphaerica|type=transcript|length=264bp
ttagattcttAAAACTAAAGGAGACTTTTATCTATTTGTTAAAATGTTTA
TCGGTTTTTCTTTTGGTAGGTTGGACGTTTAGAAAATGCGATTGGTTGGT
ACCATTCACATCCTGGTTACGGATGCTGGCTTTCTGGAATCGATGTGTCC
ACACAAATGGTCAACCAACAGTTTCAAGAACAATTTGTAGCTATCGTTGT
AAGATCTCTTTCTTTATCATGTCACTTTGCAGGAGTTTCTTGATTGCTTA
AAAGTATAGAGGAC
Run BLAST on NCBI

transcript from alignment at scaffold_253:453089..453352

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055608 ID=TCONS_00055608|Name=TCONS_00055608|organism=Clytia hemisphaerica|type=transcript|length=264bp|location=Sequence derived from alignment at scaffold_253:453089..453352 (Clytia hemisphaerica)
GTCCTCTATACTTTTAAGCAATCAAGAAACTCCTGCAAAGTGACATGATA
AAGAAAGAGATCTTACAACGATAGCTACAAATTGTTCTTGAAACTGTTGG
TTGACCATTTGTGTGGACACATCGATTCCAGAAAGCCAGCATCCGTAACC
AGGATGTGAATGGTACCAACCAATCGCATTTTCTAAACGTCCAACCTACC
AAAAGAAAAACCGATAAACATTTTAACAAATAGATAAAAGTCTCCTTTAG
TTTTaagaatctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034980XLOC_034980Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055608-exon-scaffold_253-1491911889:453089..453352TCONS_00055608-exon-scaffold_253-1491911889:453089..453352Clytia hemisphaericaexon
TCONS_00055608-exon-scaffold_253-1510915933:453089..453352TCONS_00055608-exon-scaffold_253-1510915933:453089..453352Clytia hemisphaericaexon
TCONS_00055608-exon-scaffold_253-1575043694:453089..453352TCONS_00055608-exon-scaffold_253-1575043694:453089..453352Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:453089..453352 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.769878	0	0.950252	0	1.10315	3.14773	1.97592	5.08651	8.33425	2.58148	1.42445	5.37396	5.49303	4.55411	1.25489	1.76401	2.04605	2.09839	0.74951	1.37554	1.77695	1.14334	1.17693	0.758177	12.287	13.5489	1.95022	0	1.51633	0
Blast
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BLAST of TCONS_00055608 vs. Swiss-Prot (Human)
Match: CSN5 (COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1 SV=4)

HSP 1 Score: 95.9005 bits (237), Expect = 5.991e-25
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:   70 VGRLENAIGWYHSHPGYGCWLSGIDVSTQMVNQQFQEQFVAIVV 201
            VGRLENAIGWYHSHPGYGCWLSGIDVSTQM+NQQFQE FVA+V+
Sbjct:  127 VGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVI 170
The following BLAST results are available for this feature:
BLAST of TCONS_00055608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSN55.991e-2590.91COP9 signalosome complex subunit 5 OS=Homo sapiens... [more]
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