TCONS_00055595 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055595
Unique NameTCONS_00055595
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055595 ID=TCONS_00055595|Name=TCONS_00055595|organism=Clytia hemisphaerica|type=transcript|length=560bp
TAGATATTTTTCTTGTAGCTGGCGAAGAATAAAAATAGCATCGGTCGTAC
TACGACCAGGCATGAAGCCAAACTGCATCTCATCGATTGAGATTTTGCTC
TCTGATAAGAGTTTCAAGAATACGCTCAAGAACTTTAAGTAAGACTTCAA
GCAACTTAAGACCACGATAGTTGCTACACTCTAGTGAGTCACCTTTGCCT
TTGTATAAACTGATGATGAAAGATTCATTCCATTCAGCGGGAACTTTACC
TTCACGAATGATCATATTTATAAGCGATGTTAGTTTTGGAACAACACTTT
CATAGGAGATCTTGAGCATTTCCGGAACAATGCCACTAGGGCCCGCAGAT
TTACCAGACTTCATCTTCTTTATAGCTGACAGTACCATTTTTTGTGTAAT
TTCTAACGGGGGACCTATGAGGGGCTCTGTATGCGAGAGGACAGATTCGT
CCCAATCAAACTCAGAATTCAATAGTCCCTCATGATGCTGCTTCCAAACA
TCtaatttcaatcaatcaatcaatcaatcaatattatCAACTTAATAATA
TCAAAATGTC
Run BLAST on NCBI

protein sequence of TCONS_00055595-protein

>TCONS_00055595-protein ID=TCONS_00055595-protein|Name=TCONS_00055595-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MVLSAIKKMKSGKSAGPSGIVPEMLKISYESVVPKLTSLINMIIREGKVP
AEWNESFIISLYKGKGDSLECSNYRGLKLLEVLLKVLERILETLIREQNL
NR
Run BLAST on NCBI

transcript from alignment at scaffold_253:236861..237420

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055595 ID=TCONS_00055595|Name=TCONS_00055595|organism=Clytia hemisphaerica|type=transcript|length=560bp|location=Sequence derived from alignment at scaffold_253:236861..237420 (Clytia hemisphaerica)
GACATTTTGATATTATTAAGTTGataatattgattgattgattgattgat
tgaaattaGATGTTTGGAAGCAGCATCATGAGGGACTATTGAATTCTGAG
TTTGATTGGGACGAATCTGTCCTCTCGCATACAGAGCCCCTCATAGGTCC
CCCGTTAGAAATTACACAAAAAATGGTACTGTCAGCTATAAAGAAGATGA
AGTCTGGTAAATCTGCGGGCCCTAGTGGCATTGTTCCGGAAATGCTCAAG
ATCTCCTATGAAAGTGTTGTTCCAAAACTAACATCGCTTATAAATATGAT
CATTCGTGAAGGTAAAGTTCCCGCTGAATGGAATGAATCTTTCATCATCA
GTTTATACAAAGGCAAAGGTGACTCACTAGAGTGTAGCAACTATCGTGGT
CTTAAGTTGCTTGAAGTCTTACTTAAAGTTCTTGAGCGTATTCTTGAAAC
TCTTATCAGAGAGCAAAATCTCAATCGATGAGATGCAGTTTGGCTTCATG
CCTGGTCGTAGTACGACCGATGCTATTTTTATTCTTCGCCAGCTACAAGA
AAAATATCTA

Coding sequence (CDS) from alignment at scaffold_253:236861..237420

>TCONS_00055595 ID=TCONS_00055595|Name=TCONS_00055595|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_253:236861..237420 (Clytia hemisphaerica)
ATGGTACTGTCAGCTATAAAGAAGATGAAGTCTGGTAAATCTGCGGGCCC
TAGTGGCATTGTTCCGGAAATGCTCAAGATCTCCTATGAAAGTGTTGTTC
CAAAACTAACATCGCTTATAAATATGATCATTCGTGAAGGTAAAGTTCCC
GCTGAATGGAATGAATCTTTCATCATCAGTTTATACAAAGGCAAAGGTGA
CTCACTAGAGTGTAGCAACTATCGTGGTCTTAAGTTGCTTGAAGTCTTAC
TTAAAGTTCTTGAGCGTATTCTTGAAACTCTTATCAGAGAGCAAAATCTC
AATCGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034967XLOC_034967Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055595-proteinTCONS_00055595-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055595-exon-scaffold_253-1491911889:236861..237420TCONS_00055595-exon-scaffold_253-1491911889:236861..237420Clytia hemisphaericaexon
TCONS_00055595-exon-scaffold_253-1510915933:236861..237420TCONS_00055595-exon-scaffold_253-1510915933:236861..237420Clytia hemisphaericaexon
TCONS_00055595-exon-scaffold_253-1575043694:236861..237420TCONS_00055595-exon-scaffold_253-1575043694:236861..237420Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:236861..237420 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.707533	0.295696	1.60221	0.335896	0.408921	0.646269	0.259899	0.243314	0.255525	0.105503	0.512019	0	0.134445	0.418868	0.0573944	0.061593	0.0758775	0.155544	0.214892	0	0.0977262	0.143002	0	0.210725	1.30225	1.35593	0	0	0.224373	0.1143
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055595 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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