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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055563 ID=TCONS_00055563|Name=TCONS_00055563|organism=Clytia hemisphaerica|type=transcript|length=2072bpRun BLAST on NCBI protein sequence of TCONS_00055563-protein >TCONS_00055563-protein ID=TCONS_00055563-protein|Name=TCONS_00055563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp MAAPAVEDIPKHSVHTLVFRSIKRSHDMFLSDHAHPIPLDKKAEEIKRKFRun BLAST on NCBI transcript from alignment at scaffold_253:1105857..1141575- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055563 ID=TCONS_00055563|Name=TCONS_00055563|organism=Clytia hemisphaerica|type=transcript|length=35719bp|location=Sequence derived from alignment at scaffold_253:1105857..1141575- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:1105857..1141575- >TCONS_00055563 ID=TCONS_00055563|Name=TCONS_00055563|organism=Clytia hemisphaerica|type=CDS|length=21924bp|location=Sequence derived from alignment at scaffold_253:1105857..1141575- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055563 vs. Swiss-Prot (Human)
Match: PLRG1 (Pleiotropic regulator 1 OS=Homo sapiens GN=PLRG1 PE=1 SV=1) HSP 1 Score: 653.67 bits (1685), Expect = 0.000e+0 Identity = 313/532 (58.83%), Postives = 397/532 (74.62%), Query Frame = 1
Query: 184 VEDIPKHSVHTLVFRSIKRSHDMFLSDHAHPIPLDKKAEEIKRKFKIQSEYANIQKKQQPVGSVVRDKTNSFPLALEGPK---------------GQDQMLSITGPNSFPSTPGVSLTEDIASSHRQPSAAGVSHVRSLQPISQSQIDANKHAHSIQDITNKALASGGSERIRPNN-KQLMPTTGESKVPFSQGIVPRKGTTMPKPRWHAPWKLMRVVSGHTGWVRCVALEPANQWFCTGSADRTIKIWDLATSKLKLSLTGHISTVRGLVVSPRHPYLFSCGEDKTVKCWDLEYNKVTRSYHGHLSACYGIDIHPTVDVIVTVGRDSTARVWDIRTKAAVHSLTGHTNTIADVKCQGVEPQIITGSHDCTVRYWDLVAGKSQATLTNHKKSIRSLVLHPTQYTMASGSADNIKQWKFPDGNFIQNLSGHNSILNCMAINSDGVLVSGGDNGSMHLWDWKTGYNFQRTQALVQPGSLDSESGIFSMTFDLSGTRLITTEADKTIKIYKEDDEASEESHPINWKPDIIKRKKY 1731
VE++ KHSVHTLVFRS+KR+HDMF++D+ P+PLD+++ + K K+++EY G V+ T+ L +GP+ GQ+ + G + +P PGV+LT D R PS + + P+ Q++ DAN+ A S + + G S+R +P ++ TG +K + ++ +K TMPKP+WH PWKL RV+SGH GWVRC+A+EP NQWF TGSADRTIKIWDLA+ KLKLSLTGHISTVRG++VS R PYLFSCGEDK VKCWDLEYNKV R YHGHLSA YG+D+HPT+DV+VT RDSTAR+WD+RTKA+VH+L+GHTN +A V+CQ EPQIITGSHD T+R WDLVAGK++ TLTNHKKS+R++VLHP YT ASGS DNIKQWKFPDG+FIQNLSGHN+I+N + +NSDGVLVSG DNG+MHLWDW+TGYNFQR A VQPGSLDSESGIF+ FD S +RL+T EADKTIK+Y+EDD A+EE+HP++WKP+IIKRK++
Sbjct: 2 VEEVQKHSVHTLVFRSLKRTHDMFVADNGKPVPLDEESHKRKMAIKLRNEY----------GPVLHMPTSKENLKEKGPQNATDSYVHKQYPANQGQEVEYFVAGTHPYPPGPGVALTAD-TKIQRMPSESAAQSLAVALPL-QTKADANRTAPSGSEYRH----PGASDRPQPTAMNSIVMETGNTK---NSALMAKKAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKFPDGSFIQNLSGHNAIINTLTVNSDGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACAFDQSESRLLTAEADKTIKVYREDDTATEETHPVSWKPEIIKRKRF 514 The following BLAST results are available for this feature:
BLAST of TCONS_00055563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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