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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055551 ID=TCONS_00055551|Name=TCONS_00055551|organism=Clytia hemisphaerica|type=transcript|length=2306bpRun BLAST on NCBI protein sequence of TCONS_00055551-protein >TCONS_00055551-protein ID=TCONS_00055551-protein|Name=TCONS_00055551-protein|organism=Clytia hemisphaerica|type=polypeptide|length=548bp MAYPPPGPGYPGYGGPPGYPSGVGGPPGGPGYPGAAPTYPPAGTGYPPAGRun BLAST on NCBI transcript from alignment at scaffold_253:1006409..1012560- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055551 ID=TCONS_00055551|Name=TCONS_00055551|organism=Clytia hemisphaerica|type=transcript|length=6152bp|location=Sequence derived from alignment at scaffold_253:1006409..1012560- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:1006409..1012560- >TCONS_00055551 ID=TCONS_00055551|Name=TCONS_00055551|organism=Clytia hemisphaerica|type=CDS|length=23058bp|location=Sequence derived from alignment at scaffold_253:1006409..1012560- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055551 vs. Swiss-Prot (Human)
Match: ANXA7 (Annexin A7 OS=Homo sapiens GN=ANXA7 PE=1 SV=3) HSP 1 Score: 381.333 bits (978), Expect = 6.006e-123 Identity = 179/311 (57.56%), Postives = 241/311 (77.49%), Query Frame = 2
Query: 797 HGTIVPKSPFDAEADCELLRKAMRGAGTDEQQLIDILANRSNAQRVEVRLRYKTMFGKDLMNDLKSELSGNLEETLLALMEPSVLFDAKCLRRAMRGAGTDEETLIDILCSRSNAELNRIKEEYRTYYKRDLEKDCVSETSGHFKRLLVSMCQANRDESTTVDMAKAQKEAQDLFQAGEKKWGTDESRFNVILASRSFNQLKATFDEYVKISQRDIVNSIDREMSGDIKAGMKCIVQCSRNPAVYFAERLWKSMKGAGTDDSLLIRIVVSRSEIDLKEIKTEFLKCYHKTLYKMIEGDCSGDYKKLLLAVV 1729
GTI P + FDA D E+LRKAM+G GTDEQ ++D++ANRSN QR +++ +KT +GKDL+ DLKSELSGN+EE +LAL P +DA LR+AM+GAGT E LI+ILC+R+N E+ I Y++ + RDLEKD S+TSGHF+RLLVSMCQ NRDE+ +++ AQ++AQ L+QAGE + GTDES FN+ILA+RSF QL+AT + Y +++ RD+++S+ RE SG +++G+K I+QC+ N +FAERL+ +MKGAGTDDS L+RIVV+RSEIDL +IK F + Y KTL MI GD SGDY++LLLA+V
Sbjct: 176 QGTIRPAANFDAIRDAEILRKAMKGFGTDEQAIVDVVANRSNDQRQKIKAAFKTSYGKDLIKDLKSELSGNMEELILALFMPPTYYDAWSLRKAMQGAGTQERVLIEILCTRTNQEIREIVRCYQSEFGRDLEKDIRSDTSGHFERLLVSMCQGNRDENQSINHQMAQEDAQRLYQAGEGRLGTDESCFNMILATRSFPQLRATMEAYSRMANRDLLSSVSREFSGYVESGLKTILQCALNRPAFFAERLYYAMKGAGTDDSTLVRIVVTRSEIDLVQIKQMFAQMYQKTLGTMIAGDTSGDYRRLLLAIV 486 The following BLAST results are available for this feature:
BLAST of TCONS_00055551 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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