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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055533 ID=TCONS_00055533|Name=TCONS_00055533|organism=Clytia hemisphaerica|type=transcript|length=1813bp
CAATCCACACCACGATCATTCTCACCAACGTATTTTTCAATCCAACACAG
GACTACACCAAAAGGAGATTCTACTGCTCATCCCGATATGTGTGATTGCA
GTTTTGGAAAACGTTTTGGTTTGTGTCATGATCTTTCTCTATCGAAAGTT
ACGGAATAcgacaaatatcttcattttcggTTTATGCGTAACGAACTGTT
TATTTGCAGGTGTATTGCTACCCAtgcattgttttcaaaaaacaaacgaG
ACTATATCCAATCCACACCACGATCATTCTCACCAACGTATTTTTCAATC
CAACACAGGACTACACCAAAAGGAGATTCTACTGCTCATCCCGATATGTG
TGATTGCAGTTTTGGAAAACGTTTTGGTTTGTGTCATGATCTTTCTCTAT
CGAAAGTTACGGAATAcgacaaatatcttcattttcggTTTATGCGTAAC
GAACTGTTTATTTGCAGGTGTATTGCTACCCAtgcattgttttcaaaaaa
caaacgaGGCGTATCTTTATTTAACCATAATAATCATCTTGATCTACATA
TGCAACTTGACAGGTGTCACTTTGGAAAGATACGTAGCCGTAACACGTCC
TTTACATTACGTCAATATAATCACGAAACCTAGAGCAATACGTATTGTAC
TTGCGTGCTATCTTTTACCTaccatctattgtttaattccAATGGCTTGG
CAATCAGTACAAACGTCTCTTGTTCATAAAGTCTACATCACTTTTACCTT
GGTTGTTTTCCTGATTCTCCCACTAATGTTTATACTTGTTGTCTACGCAA
GGGTGTACCAAGAAACACACAAGTTCTTCAAAAAACATAAGGCACTTTTC
TTTGAAACATCACAGTCGAAGACAGAGAACCAAGCAGAGCAGAAAACAGA
GACAAATTTTCTTGAAGTCACTTGCTTCTTCTTGTGTATatgcaataaaa
atattgatgaGAGAAGTTCAGTTCGTCATCAAGGCGATTCGAGTTCGTTA
ACAAATTCGTCGGAATGTGACTTATTCATTGAGAATGTTTCACCGCGAGA
TACTTTTCAAAGATCCAGTTTATACAAACATGTCCTACAAATATCGGCTT
CGGATTCTCAAACTAACAGCACAAGTAGCGCCACAAGTCAGATCACCACA
AAAGTAATTGAGAACAATGGGTCAGAGAGTGAAACTGAGGTTTTCGAACA
AAGCATTAAAGAACTAAAATGCAAGTTAAAACAGAGTCGTTCTTTTGATG
GACCAAACACAAGATGTCCAAGCAAAAAACACAGAAGCAAAAGTGAAAAC
CATTCACCAATTTCTAGTCGGTTAATAAATAAATCAAGTAATGCTACCAG
TTTAGATAGCTTTAAAATTAACTATTCGAGAACATGTAAAAAAGCAAAAG
CGAAACTTATTGAATTGAAAGCTTCTTCAGCATTTGCTATGGTTTCTCTT
ACATACATGTTTACCTGGTTACCAGTTGTTTATATGACTTTCTTGGAGGT
TATTGATCAACTACATCATATCCCAACTTGGATGAGCACCACTTCAGTAT
ACACCATCGGCTTTGGTGCAATGATTGATCCGTTGTTATATGGTTTCCTG
TTAAGAGACTTTCGAAAAGCAATAAATAGTACTATCAAAAAACGAAAGAA
ATCAACAGAATGGTTGACGAGATAAACTTTTTGGGTGATTTTTTTCGTAA
AATGATTTATTTCTCTTTTGTACGTTTATTTCAacacctttcccgaattg
ttatttaggctttttgatttgttttgttttaatgtttggatgtttttatt
tagTTTCGTAAAA Run BLAST on NCBI protein sequence of TCONS_00055533-protein >TCONS_00055533-protein ID=TCONS_00055533-protein|Name=TCONS_00055533-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp
NPHHDHSHQRIFQSNTGLHQKEILLLIPICVIAVLENVLVCVMIFLYRKL
RNTTNIFIFGLCVTNCLFAGVLLPMHCFQKTNETISNPHHDHSHQRIFQS
NTGLHQKEILLLIPICVIAVLENVLVCVMIFLYRKLRNTTNIFIFGLCVT
NCLFAGVLLPMHCFQKTNEAYLYLTIIIILIYICNLTGVTLERYVAVTRP
LHYVNIITKPRAIRIVLACYLLPTIYCLIPMAWQSVQTSLVHKVYITFTL
VVFLILPLMFILVVYARVYQETHKFFKKHKALFFETSQSKTENQAEQKTE
TNFLEVTCFFLCICNKNIDERSSVRHQGDSSSLTNSSECDLFIENVSPRD
TFQRSSLYKHVLQISASDSQTNSTSSATSQITTKVIENNGSESETEVFEQ
SIKELKCKLKQSRSFDGPNTRCPSKKHRSKSENHSPISSRLINKSSNATS
LDSFKINYSRTCKKAKAKLIELKASSAFAMVSLTYMFTWLPVVYMTFLEV
IDQLHHIPTWMSTTSVYTIGFGAMIDPLLYGFLLRDFRKAINSTIKKRKK
STEWLTR Run BLAST on NCBI transcript from alignment at scaffold_253:778075..780835- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055533 ID=TCONS_00055533|Name=TCONS_00055533|organism=Clytia hemisphaerica|type=transcript|length=2761bp|location=Sequence derived from alignment at scaffold_253:778075..780835- (Clytia hemisphaerica)
CAATCCACACCACGATCATTCTCACCAACGTATTTTTCAATCCAACACAG
GACTACACCAAAAGGAGATTCTACTGCTCATCCCGATATGTGTGATTGCA
GTTTTGGAAAACGTTTTGGTTTGTGTCATGATCTTTCTCTATCGAAAGTT
ACGGAATACGACAAATATCTTCATTTTCGGTTTATGCGTAACGAACTGTT
TATTTGCAGGTGTATTGCTACCCATGCATTGTTTTCAAAAAACAAACGAG
GCGTATCTTTATTTAACCATAATAATCATCTTGATCTACATATGCAACTT
GACAGGTGTCACTTTGGAAAGATACGTAGCTGTAACACGTCCTTTACATT
ACGTCAATATAATCACGAAACCTAGAGCAATACGTATTGTACTTGCGTGC
TATCTTTTACCTACCATCTATTGTTTAATTCCAATGGCTTGGCAATCAGT
ACAAACGTCTCTTGTTCATAAAGTCTACATCACTTTTACCTTGGTTGTTT
TCCTGATTCTCCCACTAATGTTTATACTTGTTGTCTACGCAAGGGTGTAC
CAAGAAACACACAAGTTCTTCAAAAAACATAAGGCACTTTTCTTTGAAAC
ATCACAGTCGAAGACAGAGAACCAAGCAGAGCAGAAAANATCCGTGAGTT
TATCACAGAAGTCGTGGGATTTGTCATACATTATATACGAGACCAGGTTT
CAACGTCAAGGCAAGATGTTCGAAACTAAAGATGAATCTCTAAGGACTTT
AGAATCTCGCTTAACCCCAGCTTAAAATTATAACATTGGGTGGAAAAATA
ACTCTAGACCGCACCAGCCCCCTTGCGAACATTTATTTTATCAATTATTT
AGAGATGTTGTGGGTTGTTTATCATTATTTTACGACGAAAAAAGTAAATG
TAGTTTTATAGGCTATATTTATGTTTATAATATAATATAAATATATCCAC
AGACACGTACCTTGTTTCTAATATGATATAAAATTTTACGTAGTTCTTGA
TATTTTAGTATTTAGACAAGACCAAATCTTCGACGTTAAATGACATATCA
GCTACTGTCAATTGAAATATTCCTGATTGTTTCCCATTTTACAAGAGATG
CCTTCACTGCAGCCAATATCTTATCTTTGTATTGCTTATAATTTTAGAAC
AAAAAATAGTTAGACCATCAACAACAACAACAACAAATGATGAACAAGAC
TATATCCAATCCACACCACGATCATTCTCACCAACGTATTTTTCAATCCA
ACACAGGACTACACCAAAAGGAGATTCTACTGCTCATCCCGATATGTGTG
ATTGCAGTTTTGGAAAACGTTTTGGTTTGTGTCATGATCTTTCTCTATCG
AAAGTTACGGAATACGACAAATATCTTCATTTTCGGTTTATGCGTAACGA
ACTGTTTATTTGCAGGTGTATTGCTACCCATGCATTGTTTTCAAAAAACA
AACGAGGCGTATCTTTATTTAACCATAATAATCATCTTGATCTACATATG
CAACTTGACAGGTGTCACTTTGGAAAGATACGTAGCCGTAACACGTCCTT
TACATTACGTCAATATAATCACGAAACCTAGAGCAATACGTATTGTACTT
GCGTGCTATCTTTTACCTACCATCTATTGTTTAATTCCAATGGCTTGGCA
ATCAGTACAAACGTCTCTTGTTCATAAAGTCTACATCACTTTTACCTTGG
TTGTTTTCCTGATTCTCCCACTAATGTTTATACTTGTTGTCTACGCAAGG
GTGTACCAAGAAACACACAAGTTCTTCAAAAAACATAAGGCACTTTTCTT
TGAAACATCACAGTCGAAGACAGAGAACCAAGCAGAGCAGAAAACAGAGA
CAAATTTTCTTGAAGTCACTTGCTTCTTCTTGTGTATATGCAATAAAAAT
ATTGATGAGAGAAGTTCAGTTCGTCATCAAGGCGATTCGAGTTCGTTAAC
AAATTCGTCGGAATGTGACTTATTCATTGAGAATGTTTCACCGCGAGATA
CTTTTCAAAGATCCAGTTTATACAAACATGTCCTACAAATATCGGCTTCG
GATTCTCAAACTAACAGCACAAGTAGCGCCACAAGTCAGATCACCACAAA
AGTAATTGAGAACAATGGGTCAGAGAGTGAAACTGAGGTTTTCGAACAAA
GCATTAAAGAACTAAAATGCAAGTTAAAACAGAGTCGTTCTTTTGATGGA
CCAAACACAAGATGTCCAAGCAAAAAACACAGAAGCAAAAGTGAAAACCA
TTCACCAATTTCTAGTCGGTTAATAAATAAATCAAGTAATGCTACCAGTT
TAGATAGCTTTAAAATTAACTATTCGAGAACATGTAAAAAAGCAAAAGCG
AAACTTATTGAATTGAAAGCTTCTTCAGCATTTGCTATGGTTTCTCTTAC
ATACATGTTTACCTGGTTACCAGTTGTTTATATGACTTTCTTGGAGGTTA
TTGATCAACTACATCATATCCCAACTTGGATGAGCACCACTTCAGTATAC
ACCATCGGCTTTGGTGCAATGATTGATCCGTTGTTATATGGTTTCCTGTT
AAGAGACTTTCGAAAAGCAATAAATAGTACTATCAAAAAACGAAAGAAAT
CAACAGAATGGTTGACGAGATAAACTTTTTGGGTGATTTTTTTCGTAAAA
TGATTTATTTCTCTTTTGTACGTTTATTTCAACACCTTTCCCGAATTGTT
ATTTAGGCTTTTTGATTTGTTTTGTTTTAATGTTTGGATGTTTTTATTTA
GTTTCGTAAAA Coding sequence (CDS) from alignment at scaffold_253:778075..780835- >TCONS_00055533 ID=TCONS_00055533|Name=TCONS_00055533|organism=Clytia hemisphaerica|type=CDS|length=3348bp|location=Sequence derived from alignment at scaffold_253:778075..780835- (Clytia hemisphaerica)
ACTATATCCAATCCACACCACGATCATTCTCACCAACGTATTTTTCAATC
CAACACAGGACTACACCAAAAGGAGATTCTACTGCTCATCCCGATATGTG
TGATTGCAGTTTTGGAAAACGTTTTGGTTTGTGTCATGATCTTTCTCTAT
CGAAAGTTACGGAATACGACAAATATCTTCATTTTCGGTTTATGCGTAAC
GAACTGTTTATTTGCAGGTGTATTGCTACCCATGCATTGTTTTCAAAAAA
CAAACGAGGCGTATCTTTATTTAACCATAATAATCATCTTGATCTACATA
TGCAACTTGACAGGTGTCACTTTGGAAAGATACGTAGCCGTAACACGTCC
TTTACATTACGTCAATATAATCACGAAACCTAGAGCAATACGTATTGTAC
TTGCGTGCTATCTTTTACCTACCATCTATTGTTTAATTCCAATGGCTTGG
CAATCAGTACAAACGTCTCTTGTTCATAAAGTCTACATCACTTTTACCTT
GGTTGTTTTCCTGATTCTCCCACTAATGTTTATACTTGTTGTCTACGCAA
GGGTGTACCAAGAAACACACAAGTTCTTCAAAAAACATAAGGCACTTTTC
TTTGAAACATCACAGTCGAAGACAGAGAACCAAGCAGAGCAGAAAACAGA
GACAAATTTTCTTGAAGTCACTTGCTTCTTCTTGTGTATATGCAATAAAA
ATATTGATGAGAGAAGTTCAGTTCGTCATCAAGGCGATTCGAGTTCGTTA
ACAAATTCGTCGGAATGTGACTTATTCATTGAGAATGTTTCACCGCGAGA
TACTTTTCAAAGATCCAGTTTATACAAACATGTCCTACAAATATCGGCTT
CGGATTCTCAAACTAACAGCACAAGTAGCGCCACAAGTCAGATCACCACA
AAAGTAATTGAGAACAATGGGTCAGAGAGTGAAACTGAGGTTTTCGAACA
AAGCATTAAAGAACTAAAATGCAAGTTAAAACAGAGTCGTTCTTTTGATG
GACCAAACACAAGATGTCCAAGCAAAAAACACAGAAGCAAAAGTGAAAAC
CATTCACCAATTTCTAGTCGGTTAATAAATAAATCAAGTAATGCTACCAG
TTTAGATAGCTTTAAAATTAACTATTCGAGAACATGTAAAAAAGCAAAAG
CGAAACTTATTGAATTGAAAGCTTCTTCAGCATTTGCTATGGTTTCTCTT
ACATACATGTTTACCTGGTTACCAGTTGTTTATATGACTTTCTTGGAGGT
TATTGATCAACTACATCATATCCCAACTTGGATGAGCACCACTTCAGTAT
ACACCATCGGCTTTGGTGCAATGATTGATCCGTTGTTATATGGTTTCCTG
TTAAGAGACTTTCGAAAAGCAATAAATAGTACTATCAAAAAACGAAAGAA
ATCAACAGAATGGTTGACGAGATAAAATCCACACCACGATCATTCTCACC
AACGTATTTTTCAATCCAACACAGGACTACACCAAAAGGAGATTCTACTG
CTCATCCCGATATGTGTGATTGCAGTTTTGGAAAACGTTTTGGTTTGTGT
CATGATCTTTCTCTATCGAAAGTTACGGAATACGACAAATATCTTCATTT
TCGGTTTATGCGTAACGAACTGTTTATTTGCAGGTGTATTGCTACCCATG
CATTGTTTTCAAAAAACAAACGAGACTATATCCAATCCACACCACGATCA
TTCTCACCAACGTATTTTTCAATCCAACACAGGACTACACCAAAAGGAGA
TTCTACTGCTCATCCCGATATGTGTGATTGCAGTTTTGGAAAACGTTTTG
GTTTGTGTCATGATCTTTCTCTATCGAAAGTTACGGAATACGACAAATAT
CTTCATTTTCGGTTTATGCGTAACGAACTGTTTATTTGCAGGTGTATTGC
TACCCATGCATTGTTTTCAAAAAACAAACGAGGCGTATCTTTATTTAACC
ATAATAATCATCTTGATCTACATATGCAACTTGACAGGTGTCACTTTGGA
AAGATACGTAGCCGTAACACGTCCTTTACATTACGTCAATATAATCACGA
AACCTAGAGCAATACGTATTGTACTTGCGTGCTATCTTTTACCTACCATC
TATTGTTTAATTCCAATGGCTTGGCAATCAGTACAAACGTCTCTTGTTCA
TAAAGTCTACATCACTTTTACCTTGGTTGTTTTCCTGATTCTCCCACTAA
TGTTTATACTTGTTGTCTACGCAAGGGTGTACCAAGAAACACACAAGTTC
TTCAAAAAACATAAGGCACTTTTCTTTGAAACATCACAGTCGAAGACAGA
GAACCAAGCAGAGCAGAAAACAGAGACAAATTTTCTTGAAGTCACTTGCT
TCTTCTTGTGTATATGCAATAAAAATATTGATGAGAGAAGTTCAGTTCGT
CATCAAGGCGATTCGAGTTCGTTAACAAATTCGTCGGAATGTGACTTATT
CATTGAGAATGTTTCACCGCGAGATACTTTTCAAAGATCCAGTTTATACA
AACATGTCCTACAAATATCGGCTTCGGATTCTCAAACTAACAGCACAAGT
AGCGCCACAAGTCAGATCACCACAAAAGTAATTGAGAACAATGGGTCAGA
GAGTGAAACTGAGGTTTTCGAACAAAGCATTAAAGAACTAAAATGCAAGT
TAAAACAGAGTCGTTCTTTTGATGGACCAAACACAAGATGTCCAAGCAAA
AAACACAGAAGCAAAAGTGAAAACCATTCACCAATTTCTAGTCGGTTAAT
AAATAAATCAAGTAATGCTACCAGTTTAGATAGCTTTAAAATTAACTATT
CGAGAACATGTAAAAAAGCAAAAGCGAAACTTATTGAATTGAAAGCTTCT
TCAGCATTTGCTATGGTTTCTCTTACATACATGTTTACCTGGTTACCAGT
TGTTTATATGACTTTCTTGGAGGTTATTGATCAACTACATCATATCCCAA
CTTGGATGAGCACCACTTCAGTATACACCATCGGCTTTGGTGCAATGATT
GATCCGTTGTTATATGGTTTCCTGTTAAGAGACTTTCGAAAAGCAATAAA
TAGTACTATCAAAAAACGAAAGAAATCAACAGAATGGTTGACGAGATAAA
ATCCACACCACGATCATTCTCACCAACGTATTTTTCAATCCAACACAGGA
CTACACCAAAAGGAGATTCTACTGCTCATCCCGATATGTGTGATTGCAGT
TTTGGAAAACGTTTTGGTTTGTGTCATGATCTTTCTCTATCGAAAGTTAC
GGAATACGACAAATATCTTCATTTTCGGTTTATGCGTAACGAACTGTTTA
TTTGCAGGTGTATTGCTACCCATGCATTGTTTTCAAAAAACAAACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055533-exon-scaffold_253-1575043694:780586..780835 | TCONS_00055533-exon-scaffold_253-1575043694:780586..780835 | Clytia hemisphaerica | exon |
| TCONS_00055533-exon-scaffold_253-1575043694:778075..779637 | TCONS_00055533-exon-scaffold_253-1575043694:778075..779637 | Clytia hemisphaerica | exon |
| TCONS_00055533-exon-scaffold_253-1510915933:780586..780835 | TCONS_00055533-exon-scaffold_253-1510915933:780586..780835 | Clytia hemisphaerica | exon |
| TCONS_00055533-exon-scaffold_253-1510915933:778075..779637 | TCONS_00055533-exon-scaffold_253-1510915933:778075..779637 | Clytia hemisphaerica | exon |
| TCONS_00055533-exon-scaffold_253-1491911889:780586..780835 | TCONS_00055533-exon-scaffold_253-1491911889:780586..780835 | Clytia hemisphaerica | exon |
| TCONS_00055533-exon-scaffold_253-1491911889:778075..779637 | TCONS_00055533-exon-scaffold_253-1491911889:778075..779637 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:778075..780835 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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