TCONS_00055529 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055529
Unique NameTCONS_00055529
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2192

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055529 ID=TCONS_00055529|Name=TCONS_00055529|organism=Clytia hemisphaerica|type=transcript|length=2192bp
ctagaaaatgagaaatcagcaaaaatcaggtacaggccgaaggctagaag
tcaatctctttggtaggatttgaagccaacaaatcctaccaaagttgcgc
ggccttgagcggctcggctggtttttacacaaatgacagattgaaactaa
aatttaccactaaatttcaaaaaaaatatcaatcgtaaacaaaggaattg
ctagattcaatctgtcgtcaaaaatacggtgcATTTTTTAAGGCCTCACT
TTTTCTTCCCTGAGAAGGGTTAGaaattctactctagcccttcgggcttt
aaactcaatgtaaTAATCCCTTGTTTCAACCATTTTGTTATTTACAGGCA
AGTAGAGAGAGTGCGTGTCCGATGAAAGGGCTCCCCGATCGTTTTTGAGT
AACAGATTCTTAGATTTAGAAAGGTGGGTCTAATTCccagattttttatt
taggaTTAGAAGAAATGTCAAACAGGGCCAACAAGTTGTGTACTGTAAAA
AATGTCAACAGCAAATGACGAGAAAGAAAATCTTATGAATTCAACATCAA
AAGATGTAGACGAAGGCTCACCGAGACATTGTCACAAAAGTCAAACATCG
CTCAAAGTCTACCCACAGCGTTGGCTTATGTTGTTCATATTTTCACTATG
TACGACTCTAAATGGTTTCATGTTTTTGGGCTTAAGCGCTGTCGCCAATG
TAGCTTCTGCATATTATAACGTATCAACTGTAAGCATTGAATGGCTGGCG
AATATGGGAGTCCttattttcgttttcgtttcgCTTCCAGTGGCTTATTT
AGTATCAAGATATGGTGTTCGTATTGTATTAACTGTGGCAACTGGATTGA
TGGTACTTTGTGCCGTATTTCAATATCTTGGAGCTGGAAAAGATGGCTAC
ACTTATGTTTTGATAGGACAATTCTTTTATGGTGTTTCATACGGAAGTAT
AGTACAAATTCCAGGACAACTTTCAGCAAATTGGTTTGCTCCTCATGAGA
GAGGCATGTCAACAGCCATAGGGGTTTTAATGAATATTTTGGGAGTAGCT
GTTGGATTCATACAACCCTCTCTTATGATACCTGCTAGTAATGACCTAAC
TATTGTGGCTATTGGAAtggaaaactttttcaaatccaGGCTTATTGTTG
CACTTATTATTTTCTTGGTAACATTGATCTTGTATAGAGAATACCCACCT
TCACCACCTTCTATTATTCCTGATCGAAAGAACTTAACTTTTTTGCAATC
GCTGAAAATGTTGTACAAAGATGTTAATTTTCAAATGGTAGCACAAGCTT
TCGGTATCAACAGTGGATTGCTTTTAGCTGTAGCTGTTGTCCTGTCGCAG
CTTGTGGTCTGGAGACACGGAGCAAGTCCAGCAATTCAGCATTTTATCGG
ATGGACGGGTGCCATGGGCGATATCGCTGCTTGTGCTAGTATGCTAGTGG
GCGGTTTTGTTCAAGATCGCTACTCCAAGCACAGAGAGCTAGCAATTGTT
TTGAACGCTGGATCATTTATTTTTTGGTTAGTATTTGCATTGGTGTTAAC
GCTATCCAACAATCTTTACATCTTGTTTTTGTCGTATGccatttttgctg
tttttagcATTCCATATTTTGGATCTGGGATTGAACATATTGCAGAAATG
ACGTCCCCTGTACCAGAAGGCACCTCTAGTTCGATTGTgttgattttatc
aaatatatatGGTTTCATCACAATTTACGCATTCGGTAAATTGATAGAGA
GTGGATTCCCTTTAACTACAATTTGTCTGATCTTGTTGTTATATCTTTTA
TCAACAATTTTTGTGACTTTCGCAAAGACTGAATTGAAGCGATCAAAAAC
CGAAAGTACTTCCATTATGATTGAGTTTGATTGGTCAGACGATGAGGTGG
ACATTGATGGCCAGAATAAGGTGTTTTTGGATGATACACCTTAGGTAAAA
AGACAGTAAACACCTTTTAACCCACTCAGCACCCTGGCGGAGGGGCGGAG
GGTAACTATCAGACCTTTCAAGGATAGTTTTTTCTAGTGTACTGTACACC
CTTTATataatttaataaatttttttataattagaaaaagattttgatat
ggaagagaaatttcaaatttcgatattttttagttgGTTAGGATATGATT
ACGAACCGTCCAATTGTTCAATAATTGATGGTTACTTTTCCA
Run BLAST on NCBI

protein sequence of TCONS_00055529-protein

>TCONS_00055529-protein ID=TCONS_00055529-protein|Name=TCONS_00055529-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp
MSTANDEKENLMNSTSKDVDEGSPRHCHKSQTSLKVYPQRWLMLFIFSLC
TTLNGFMFLGLSAVANVASAYYNVSTVSIEWLANMGVLIFVFVSLPVAYL
VSRYGVRIVLTVATGLMVLCAVFQYLGAGKDGYTYVLIGQFFYGVSYGSI
VQIPGQLSANWFAPHERGMSTAIGVLMNILGVAVGFIQPSLMIPASNDLT
IVAIGMENFFKSRLIVALIIFLVTLILYREYPPSPPSIIPDRKNLTFLQS
LKMLYKDVNFQMVAQAFGINSGLLLAVAVVLSQLVVWRHGASPAIQHFIG
WTGAMGDIAACASMLVGGFVQDRYSKHRELAIVLNAGSFIFWLVFALVLT
LSNNLYILFLSYAIFAVFSIPYFGSGIEHIAEMTSPVPEGTSSSIVLILS
NIYGFITIYAFGKLIESGFPLTTICLILLLYLLSTIFVTFAKTELKRSKT
ESTSIMIEFDWSDDEVDIDGQNKVFLDDTP
Run BLAST on NCBI

transcript from alignment at scaffold_253:749905..752230-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055529 ID=TCONS_00055529|Name=TCONS_00055529|organism=Clytia hemisphaerica|type=transcript|length=2326bp|location=Sequence derived from alignment at scaffold_253:749905..752230- (Clytia hemisphaerica)
CTAGAAAATGAGAAATCAGCAAAAATCAGGTACAGGCCGAAGGCTAGAAG
TCAATCTCTTTGGTAGGATTTGAAGCCAACAAATCCTACCAAAGTTGCGC
GGCCTTGAGCGGCTCGGCTGGTTTTTACACAAATGACAGATTGAAACTAA
AATTTACCACTAAATTTCAAAAAAAATATCAATCGTAAACAAAGGAATTG
CTAGATTCAATCTGTCGTCAAAAATACGGTGCATTTTTTAAGGCCTCACT
TTTTCTTCCCTGAGAAGGGTTAGAAATTCTACTCTAGCCCTTCGGGCTTT
AAACTCAATGTAATAATCCCTTGTTTCAACCATTTTGTTATTTACAGGCA
AGTAGAGAGAGTGCGTGTCCGATGAAAGGGCTCCCCGATCGTTTTTGAGT
AACAGATTCTTAGATTTAGAAAGGTGGGTCTAATTCCCAGATTTTTTATT
TAGGATTAGAAGAAATGTCAAACAGGGCCAACAAGTTGTGGTAAGCACTA
AATATCATTGTTTCCTTATATCTGGCATCTTTACAGACATTTCACCGCAT
ACATAATGAAGGATCTTTGGTGCACAGACTGACAGAGATCTCGTTTTTTC
TCATTTCATCTTTTCTACTTCTAGTACTGTAAAAAATGTCAACAGCAAAT
GACGAGAAAGAAAATCTTATGAATTCAACATCAAAAGATGTAGACGAAGG
CTCACCGAGACATTGTCACAAAAGTCAAACATCGCTCAAAGTCTACCCAC
AGCGTTGGCTTATGTTGTTCATATTTTCACTATGTACGACTCTAAATGGT
TTCATGTTTTTGGGCTTAAGCGCTGTCGCCAATGTAGCTTCTGCATATTA
TAACGTATCAACTGTAAGCATTGAATGGCTGGCGAATATGGGAGTCCTTA
TTTTCGTTTTCGTTTCGCTTCCAGTGGCTTATTTAGTATCAAGATATGGT
GTTCGTATTGTATTAACTGTGGCAACTGGATTGATGGTACTTTGTGCCGT
ATTTCAATATCTTGGAGCTGGAAAAGATGGCTACACTTATGTTTTGATAG
GACAATTCTTTTATGGTGTTTCATACGGAAGTATAGTACAAATTCCAGGA
CAACTTTCAGCAAATTGGTTTGCTCCTCATGAGAGAGGCATGTCAACAGC
CATAGGGGTTTTAATGAATATTTTGGGAGTAGCTGTTGGATTCATACAAC
CCTCTCTTATGATACCTGCTAGTAATGACCTAACTATTGTGGCTATTGGA
ATGGAAAACTTTTTCAAATCCAGGCTTATTGTTGCACTTATTATTTTCTT
GGTAACATTGATCTTGTATAGAGAATACCCACCTTCACCACCTTCTATTA
TTCCTGATCGAAAGAACTTAACTTTTTTGCAATCGCTGAAAATGTTGTAC
AAAGATGTTAATTTTCAAATGGTAGCACAAGCTTTCGGTATCAACAGTGG
ATTGCTTTTAGCTGTAGCTGTTGTCCTGTCGCAGCTTGTGGTCTGGAGAC
ACGGAGCAAGTCCAGCAATTCAGCATTTTATCGGATGGACGGGTGCCATG
GGCGATATCGCTGCTTGTGCTAGTATGCTAGTGGGCGGTTTTGTTCAAGA
TCGCTACTCCAAGCACAGAGAGCTAGCAATTGTTTTGAACGCTGGATCAT
TTATTTTTTGGTTAGTATTTGCATTGGTGTTAACGCTATCCAACAATCTT
TACATCTTGTTTTTGTCGTATGCCATTTTTGCTGTTTTTAGCATTCCATA
TTTTGGATCTGGGATTGAACATATTGCAGAAATGACGTCCCCTGTACCAG
AAGGCACCTCTAGTTCGATTGTGTTGATTTTATCAAATATATATGGTTTC
ATCACAATTTACGCATTCGGTAAATTGATAGAGAGTGGATTCCCTTTAAC
TACAATTTGTCTGATCTTGTTGTTATATCTTTTATCAACAATTTTTGTGA
CTTTCGCAAAGACTGAATTGAAGCGATCAAAAACCGAAAGTACTTCCATT
ATGATTGAGTTTGATTGGTCAGACGATGAGGTGGACATTGATGGCCAGAA
TAAGGTGTTTTTGGATGATACACCTTAGGTAAAAAGACAGTAAACACCTT
TTAACCCACTCAGCACCCTGGCGGAGGGGCGGAGGGTAACTATCAGACCT
TTCAAGGATAGTTTTTTCTAGTGTACTGTACACCCTTTATATAATTTAAT
AAATTTTTTTATAATTAGAAAAAGATTTTGATATGGAAGAGAAATTTCAA
ATTTCGATATTTTTTAGTTGGTTAGGATATGATTACGAACCGTCCAATTG
TTCAATAATTGATGGTTACTTTTCCA

Coding sequence (CDS) from alignment at scaffold_253:749905..752230-

>TCONS_00055529 ID=TCONS_00055529|Name=TCONS_00055529|organism=Clytia hemisphaerica|type=CDS|length=1443bp|location=Sequence derived from alignment at scaffold_253:749905..752230- (Clytia hemisphaerica)
ATGTCAACAGCAAATGACGAGAAAGAAAATCTTATGAATTCAACATCAAA
AGATGTAGACGAAGGCTCACCGAGACATTGTCACAAAAGTCAAACATCGC
TCAAAGTCTACCCACAGCGTTGGCTTATGTTGTTCATATTTTCACTATGT
ACGACTCTAAATGGTTTCATGTTTTTGGGCTTAAGCGCTGTCGCCAATGT
AGCTTCTGCATATTATAACGTATCAACTGTAAGCATTGAATGGCTGGCGA
ATATGGGAGTCCTTATTTTCGTTTTCGTTTCGCTTCCAGTGGCTTATTTA
GTATCAAGATATGGTGTTCGTATTGTATTAACTGTGGCAACTGGATTGAT
GGTACTTTGTGCCGTATTTCAATATCTTGGAGCTGGAAAAGATGGCTACA
CTTATGTTTTGATAGGACAATTCTTTTATGGTGTTTCATACGGAAGTATA
GTACAAATTCCAGGACAACTTTCAGCAAATTGGTTTGCTCCTCATGAGAG
AGGCATGTCAACAGCCATAGGGGTTTTAATGAATATTTTGGGAGTAGCTG
TTGGATTCATACAACCCTCTCTTATGATACCTGCTAGTAATGACCTAACT
ATTGTGGCTATTGGAATGGAAAACTTTTTCAAATCCAGGCTTATTGTTGC
ACTTATTATTTTCTTGGTAACATTGATCTTGTATAGAGAATACCCACCTT
CACCACCTTCTATTATTCCTGATCGAAAGAACTTAACTTTTTTGCAATCG
CTGAAAATGTTGTACAAAGATGTTAATTTTCAAATGGTAGCACAAGCTTT
CGGTATCAACAGTGGATTGCTTTTAGCTGTAGCTGTTGTCCTGTCGCAGC
TTGTGGTCTGGAGACACGGAGCAAGTCCAGCAATTCAGCATTTTATCGGA
TGGACGGGTGCCATGGGCGATATCGCTGCTTGTGCTAGTATGCTAGTGGG
CGGTTTTGTTCAAGATCGCTACTCCAAGCACAGAGAGCTAGCAATTGTTT
TGAACGCTGGATCATTTATTTTTTGGTTAGTATTTGCATTGGTGTTAACG
CTATCCAACAATCTTTACATCTTGTTTTTGTCGTATGCCATTTTTGCTGT
TTTTAGCATTCCATATTTTGGATCTGGGATTGAACATATTGCAGAAATGA
CGTCCCCTGTACCAGAAGGCACCTCTAGTTCGATTGTGTTGATTTTATCA
AATATATATGGTTTCATCACAATTTACGCATTCGGTAAATTGATAGAGAG
TGGATTCCCTTTAACTACAATTTGTCTGATCTTGTTGTTATATCTTTTAT
CAACAATTTTTGTGACTTTCGCAAAGACTGAATTGAAGCGATCAAAAACC
GAAAGTACTTCCATTATGATTGAGTTTGATTGGTCAGACGATGAGGTGGA
CATTGATGGCCAGAATAAGGTGTTTTTGGATGATACACCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034928XLOC_034928Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055529-proteinTCONS_00055529-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055529-exon-scaffold_253-1575043694:751741..752230TCONS_00055529-exon-scaffold_253-1575043694:751741..752230Clytia hemisphaericaexon
TCONS_00055529-exon-scaffold_253-1575043694:749905..751606TCONS_00055529-exon-scaffold_253-1575043694:749905..751606Clytia hemisphaericaexon
TCONS_00055529-exon-scaffold_253-1510915933:751741..752230TCONS_00055529-exon-scaffold_253-1510915933:751741..752230Clytia hemisphaericaexon
TCONS_00055529-exon-scaffold_253-1510915933:749905..751606TCONS_00055529-exon-scaffold_253-1510915933:749905..751606Clytia hemisphaericaexon
TCONS_00055529-exon-scaffold_253-1491911889:751741..752230TCONS_00055529-exon-scaffold_253-1491911889:751741..752230Clytia hemisphaericaexon
TCONS_00055529-exon-scaffold_253-1491911889:749905..751606TCONS_00055529-exon-scaffold_253-1491911889:749905..751606Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:749905..752230 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.25703	4.36851	14.4121	15.4878	45.617	35.8005	15.6667	18.4092	5.65109	10.819	5.93868	3.26376	2.79438	2.45089	1.49795	1.52873	0.975304	1.35179	4.35957	4.1617	2.76847	2.70427	5.00575	4.45568	1.15592	1.05455	0.762794	0.824637	2.18766	2.34174
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00055529 vs. Swiss-Prot (Human)
Match: FLVC2 (Feline leukemia virus subgroup C receptor-related protein 2 OS=Homo sapiens GN=FLVCR2 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.341e-33
Identity = 104/428 (24.30%), Postives = 215/428 (50.23%), Query Frame = 1 
Query:  601 LKVYPQRWLMLFIFSLCTTLNGFMFLGLXXXXXXXXXXXXXXTVSIEWLANMGVLIFVFVSLPVAYLVSRYGVRIVLTVATGLMVLCAVFQYLGAGKDGYTYVLIGQFFYGVSYGSIVQIPGQLSANWFAPHERGMSTAIGVLMNILGVAVGFIQPSLMIPASNDLTIVAIGMENFFKSRLIVALIIFLVTLILYREYPPSPPSIIPD------RKNLTFLQSLKMLYKDVNFQMVAQAFGINSGXXXXXXXXXXXXXXWRHGASPAIQHFIGWTGAMGDIAACASMLVGGFVQDRYSKHRELAIVLNAGSFIFWLVFALVLTLSNNLYILFLSYAIFAVFSIPYFGSGIEHIAEMTSPVPEGTSSSIVLILSNIYGFITIYAFGKLIESGFPXXXXXXXXXXXXXXXXFVTFAKTELKRSKTESTSI 1866
            +KV  +RW ++ +FS  +  N F ++   ++ N+   +Y VS  +I+WL+   +L ++ + LPVA+L+ ++G+R +    + L  L A  +        +   ++GQ    V+   I+ +P ++++ WF  +E   + ++ V  N LG+A+GF+ P +++P   D   +A  +   F     VA ++ ++ +I+++E P  PPS            + ++L S+  L+K++NF ++   +G+N+G   A++ +L+++V+W +   P  +   G  G    IA     ++ G   DR   ++E  +V+   + +  +V+   L L  +L+++F++      F   Y   G E   E+T P  EG SS ++ I + ++G I   + G++I++         + +   L      F K +L+R K    ++
Sbjct:   78 IKVSRRRWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAWLLEKFGLRTIALTGSALNCLGAWVKLGSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQLGIAIGFLVPPVLVPNIEDRDELAYHISIMFYIIGGVATLLLILVIIVFKEKPKYPPSRAQSLSYALTSPDASYLGSIARLFKNLNFVLLVITYGLNAGAFYALSTLLNRMVIWHY---PGEEVNAGRIGLTIVIAGMLGAVISGIWLDRSKTYKETTLVVYIMTLVGMVVYTFTLNL-GHLWVVFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTISQGQIIDNYGTKPGNIFLCVFLTLGAALTAFIKADLRRQKANKETL 501
The following BLAST results are available for this feature:
BLAST of TCONS_00055529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FLVC24.341e-3324.30Feline leukemia virus subgroup C receptor-related ... [more]
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