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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055515 ID=TCONS_00055515|Name=TCONS_00055515|organism=Clytia hemisphaerica|type=transcript|length=4201bpRun BLAST on NCBI protein sequence of TCONS_00055515-protein >TCONS_00055515-protein ID=TCONS_00055515-protein|Name=TCONS_00055515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp MASPRTRRVLRELKFKDGNNTCFECSSHNPQWVSVSYGIWICLDCSGKHRRun BLAST on NCBI transcript from alignment at scaffold_253:513342..541290- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055515 ID=TCONS_00055515|Name=TCONS_00055515|organism=Clytia hemisphaerica|type=transcript|length=27949bp|location=Sequence derived from alignment at scaffold_253:513342..541290- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:513342..541290- >TCONS_00055515 ID=TCONS_00055515|Name=TCONS_00055515|organism=Clytia hemisphaerica|type=CDS|length=18954bp|location=Sequence derived from alignment at scaffold_253:513342..541290- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055515 vs. Swiss-Prot (Human)
Match: ARFG1 (ADP-ribosylation factor GTPase-activating protein 1 OS=Homo sapiens GN=ARFGAP1 PE=1 SV=2) HSP 1 Score: 237.654 bits (605), Expect = 4.659e-68 Identity = 149/338 (44.08%), Postives = 201/338 (59.47%), Query Frame = 2
Query: 146 MASPRTRRVLRELKFKDGNNTCFECSSHNPQWVSVSYGIWICLDCSGKHRGLGVHLSFVRSVTMDKWKDNELEKMKAGGNNKAKDFFTSQSEYNQGWSIQEKYNSRTAALYRDKITTESEGRPWSESTSSAKNYTPPTRSSGGLQTSPRANKXXXXXXXXXXXXGQAINNMDDLESFLGKSKGEISKDKEDFFIKRQMENDSRPENLPPSQGGKYVGFGXXXXXXXXXXXXXXXXXXXXLQAGWNTFSIGXXXXXXX-----------XXXXXXXXXXXLNENVIKPASNKAQEFGTNVSAKANEGKLVSEVSASLQGAATKASSYGMKGWYSLQSYM 1126
MASPRTR+VL+E++ +D NN CFEC + NPQWVSV+YGIWICL+CSG+HRGLGVHLSFVRSVTMDKWKD ELEKMKAGGN K ++F SQ +Y+ WS+QEKYNSR AAL+RDK+ +EGR WS +S A+N+TPP + + + S +S+ + +N DDL S+ G +QG +YVGFG + P Q ++ +SSL +GW++F+ GA + ASA AS+KA ++G LNENV+KPA K + EGK+ +VS+ + A+K G KGW + ++
Sbjct: 1 MASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSLESSPAQNWTPPQPRTLPSMVHRVSGQPQSVTASSDKAFEDWLN--DDLGSYQG------------------------------AQGNRYVGFG-NTPPPQKKEDDFLNNAMSSLYSGWSSFTTGASRFASAAKEGATKFGSQASQKASELGHSLNENVLKPAQEKVK-----------EGKIFDDVSSGVSQLASKVQGVGSKGWRDVTTFF 294 The following BLAST results are available for this feature:
BLAST of TCONS_00055515 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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