TCONS_00055512 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055512
Unique NameTCONS_00055512
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1102

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055512 ID=TCONS_00055512|Name=TCONS_00055512|organism=Clytia hemisphaerica|type=transcript|length=1102bp
CTAAGCGAAATTAAGTATAGATGATATTTACACGTCTTACTCTGCCAACC
ATTCTTATATAACAATTTGAAATtagattaaaaaaacaaaaaacaatgga
aattaAACAAATACCAATCAACAATGAAGATTTACAGAGGTTCAACAGTG
ACTGTTATACATTTAAAGAGCATCCCTTGAGTATGTTGGAACCATACCAT
CAAGTCTTTCCATCACTTTATATGGATCACCACAAATCATTTCAAGAAGC
TGAAGTTTATGAAGATGATGTTTGGATTTGCACTTTCCCAAAATCAGGAA
CCCGTTGGATGCAAGAAATTGTCTCTTGTCTACGGAATGGAAtggatttt
gaaaaaTGTATCTGCTGTATGCAGCACTGCAGAGAAGGAACTCAAAGCAT
TGGGTTCCCTTTGTAAAACTGGAGCTGAACTTGTCAACCATACACCTCGA
CCAAGGACTATAAAAACTCATCTCAGCTATGAAATGTTGCCTCCAAAGAT
TCATGAAAAAGGTGCCAAGATGATAAACGTCATACGAAACCCACGTGATG
TTTGTGTATCATTTCTCAATCATCATGTTCTGACAGAAAACTATACTGGT
GATTTACAAACCATCGCAGAGATTATGTTACAGGATGTAGGACCTCTCTG
TGCTCCTTTCTTTACACATATCCTGAGCTACTGGAACCAACGAGAAAATC
CAAATCTTTTGATTGTTCACTATGAAGAGATGCAAAAAGACATAGCTGGT
GTTATCAAGCGAGTGGCCAAGTTTATAGGCACAGAAGAATATTCAGATAA
CCAAATAGCAAAACTTATTGACCACACATCAGTGGATAAAATGAGAGTCA
ACCCTATGGTCAATGGGACAGGAGTTATAGATGTAATTACACTTTCTTCA
ATTAATTAATCATAGCCAAAAGTGGGCAATGCTCTTGACTCAACATCAGA
TGCCTAAAATTGATTCTTTAAAGGGTTTCGTATTTTCAAATGAAGTGTTT
TCCACCACCCTTCATAGGAATAGGaactcccggggggggtactagggcaa
gatgggttacggggatgctccgctggtcagggtaccttttttaacctcca
cg
Run BLAST on NCBI

transcript from alignment at scaffold_253:478700..484380-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055512 ID=TCONS_00055512|Name=TCONS_00055512|organism=Clytia hemisphaerica|type=transcript|length=5681bp|location=Sequence derived from alignment at scaffold_253:478700..484380- (Clytia hemisphaerica)
CTAAGCGAAATTAAGTATAGATGATATTTACACGTCTTACTCTGCCAACC
ATTCTTATATAACAATTTGAAATTAGATTAAAAAAACAAAAAACAATGGA
AATTAAACAAATACCAATCAACAATGAAGATTTACAGAGGTTCAACAGTG
ACTGTTATACATTTAAAGAGCATCCCTTGAGTATGTTGGAACCATACCAT
CAAGTCTTTCCATCACTTTATATGGATCACCACAAATCATTTCAAGAAGC
TGAAGTTTATGAAGATGATGTTTGGATTTGCACTTTCCCAAAATCAGGTT
GAAATATTAACCAAGGAGATTACTTGGTACTAATCTCTGAATTTGTAAAA
GATAGATTAAGATTTTCTGTTCTTTAACAAAATCATCACATAATAATTCA
TACAATTCACCATTCACCATTATTATTGCTTGTTTCCCTTTTTATCAACA
ATTGTTATTTTTCGATTTTCTTTGAAAGGCCTACCAGGCAGGCAAAGATT
GTTAATAAAAGTTTTTCTATTTAATCTCTATTTTTTATGTTCTAGGAACC
CGTTGGATGCAAGAAATTGTCTCTTGTCTACGGAATGGAATGGATTTTGA
AAAAGTAAAGACCACCTCTTTGAACCTAAGAGTTCCATTCTTTGAGTAAG
TTTTTAAAGGAAAATGAGAAAAAATATTCAAGAAGTAATGAAATATTTCA
AAATTAATCCTGCCAACTTTATATCATTTGTATTTACAATTTAGTGTATC
TGCTGTATGCAGCACTGCAGAGAAGGAACTCAAAGCATTGGGTTCCCTTT
GTAAAACTGGAGCTGAACTTGTCAACCATACACCTCGACCAAGGACTATA
AAAACTCATCTCAGCTATGAAATGTTGCCTCCAAAGATTCATGAAAAAGG
TGCCAAGGTATCAAAGTTTCTTTTCCAAAACTTATGAATAGAATAGAACC
TAGTCAGAAATGGACCTCACTGCTATTATTACTATAATTCTTCCTTGATA
TTTTCTAGATGATAAACGTCATACGAAACCCACGTGATGTTTGTGTATCA
TTTCTCAATCATCATGTTCTGACAGAAAACTATACTGGTGATTTACAAAC
CATCGCAGAGATTATGTTACAGGATGTAGGACCTCTCTGTGCTCCTTTCT
TTACACATATCCTGAGCTACTGGAACCAACGAGAAAATCCAAATCTTTTG
ATTGTTCACTATGAAGAGATGCAAAAAGACATAGCTGGTAAGACAGCCTT
TTTTATTTTTCACTTGCTTTATAACATATTTGAAAAAACCCATAGTATGT
AGATAAAAGTATCTTAGTAATTTCAAATAAAAAAATTCATCTCTGTTTGT
ATACATGCTTATTCAACATGCATGTTGTAGTCTCATTTTACATGGAAAAT
CACAGCTTAAAATTTCACAATCACATGCATGTAAAGATAAATTTCTATAC
CCCAAAATTACAAAAAAAAACATGCATGTAGTGCGGTATTACACCCCGAA
AATGAAACTCATGAATGTAAAAGTGTTTTTTTTAATGAATTTTGTGTATG
ATCATCAACTTTAAAGGAGAAATCAACATTTTTTTCATATTTTTGAAAAA
TACCTAAATCACATCATATTGTAGCCTGAGAATCCAAGCTCATATTTTTA
GAAAAAACAAAAAATACCTCACCTCACAAAGTTTTAAAATTATAGAGCTT
GGTGCAGGTAGATTAGTCTGACACAGAATGTTATAAACAGTCTGTGTGTG
AACCCTTGTTGACAGACTTTCTGAACTTTGGAAACCCAGGCAAACACACA
TAATCAACTTACCATAAAAACTCTAGNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNTCTAGCAAAAGATATAGCTCATTTTTGTTTACAGAAAAT
CTAATCTTTTTAAAACAACGCATTTTATGTTAGGGGAATAGGTTGAGCCA
TCTGTTTGATGTGAAAGTGTTTATAAAGTATAATTGGAAAAGCTCTTGCT
TTTAGTTGATAAAGAACTCTTAAACTTTTTTAAACTTTTACAACTTAACT
TTTTTAATGTGTAGCCAAAACTTTTTATATCCACATATGGGTTAGCCAAG
AGAAGGATATCATTTAAGCCATTTTTGAGTGGAGTAAAACTATGTTTGAA
CTTTTGAAAACAACCAAGTGAAAATAATTTCAGAGTCCATTGAAAAAATT
GAATTTTTCATTGGAATAAGCAGAAAACCTCTTTTTTAGCGGCTAGTTCG
AAACGCAGGTCACCTCATTTTGTGATAACGCCATTATTTCCATAATTTAG
GTGTCACTTTGTCAATATTAGGGGTTGATGATTTGTCCTTGAAATCTTAA
TAGCATATTTTGTTTGTATACAACATGTCCATTATGCATATAATATTTAA
AAAAACATGTTATGAATGGCATGTTACGAGTGCAGTACAGTTTTCTGGAC
TGTAGTTTATATGACCTGTAACCTGTGACCTGCGTTTCAAACTAGCCGCT
TCTATAATCCATGTCAAACTGAATCTTACCCGAAATGATTTTGCATTATT
TCTCGTTTACAAATTATCAAGCTTTTAAGTCGCACAAAATGCACAAAATT
CATAAAAAGTATGAACCATATGATGTCACAAACATGTGTAAAGTAAGGGT
TCATTTTAAACAAATTATACGCTTTTTGAAGAAGGTTTGATACAAAATAA
GACAGAGGCTGAGAGTGGAAGTGATTTTTTTTTCGGGGAGGGGGGTACTT
GTTTTGAAAACAACTATAGGTTTGGCCCAAAAATTTTTGAGACATACAGA
TGGGAAATATACACATGTTCAAGAGCACGAGTAGCACGATATTGAATAAT
TTAGTTTAATTTCCTTGCTTACGAAGGAAGAATTCATTTCATTTGAAAAT
TTTCATATTTTCATAGGAATAAGGTAATTTGCTACCATTACAGTAAAGGT
ACAGCTAAAAACATACCCTTACAGTGCAGCACTGGTCAAAACATACCCTT
ACGGTGCACTAGCGAATCTTGAAAAATTGACCCTTAAGTGCCGCACGTCT
GGTAAATCATTTACCTTGAGTGCCCCCCGGGTATTTTTTCGAAGTTCTAC
TATATTATCTTGTACTTTCTTATTATTCTTGTAATTTCAGAGAATATGAA
AAAAATTAATTGCTGCACTTACAGCATCACTAATTATCAAACCTTTCTTT
TTTCGTTTTCTTTTGGTTTTCTTATAGGTGTTATCAAGCGAGTGGCCAAG
TTTATAGGCACAGAAGAATATTCAGATAACCAAATAGCAAAACTTATTGA
CCACACATCAGTGGATAAAATGAGAGTCAACCCTATGGTCAATGGGACAG
GAGTTATAGATGTAATTACACTTTCTTCAATTAATTAATCATAGCCAAAA
GTGGGCAATGCTCTTGACTCAACATCAGATGCCTAAAATTGATTCTTTAA
AGGGTTTCGTATTTTCAAATGAAGTGTTTTCCACCACCCTTCATAGGAAT
AGGAACTCCCGGGGGGGGTACTAGGGCAAGATGGGTTACGGGGATGCTCC
GCTGGTCAGGGTACCTTTTTTAACCTCCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034922XLOC_034922Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055512-exon-scaffold_253-1575043694:484084..484380TCONS_00055512-exon-scaffold_253-1575043694:484084..484380Clytia hemisphaericaexon
TCONS_00055512-exon-scaffold_253-1575043694:483777..483835TCONS_00055512-exon-scaffold_253-1575043694:483777..483835Clytia hemisphaericaexon
TCONS_00055512-exon-scaffold_253-1575043694:483474..483636TCONS_00055512-exon-scaffold_253-1575043694:483474..483636Clytia hemisphaericaexon
TCONS_00055512-exon-scaffold_253-1575043694:483144..483372TCONS_00055512-exon-scaffold_253-1575043694:483144..483372Clytia hemisphaericaexon
TCONS_00055512-exon-scaffold_253-1575043694:478700..479053TCONS_00055512-exon-scaffold_253-1575043694:478700..479053Clytia hemisphaericaexon
TCONS_00055512-exon-scaffold_253-1510915933:484084..484380TCONS_00055512-exon-scaffold_253-1510915933:484084..484380Clytia hemisphaericaexon
TCONS_00055512-exon-scaffold_253-1510915933:483777..483835TCONS_00055512-exon-scaffold_253-1510915933:483777..483835Clytia hemisphaericaexon
TCONS_00055512-exon-scaffold_253-1510915933:483474..483636TCONS_00055512-exon-scaffold_253-1510915933:483474..483636Clytia hemisphaericaexon
TCONS_00055512-exon-scaffold_253-1510915933:483144..483372TCONS_00055512-exon-scaffold_253-1510915933:483144..483372Clytia hemisphaericaexon
TCONS_00055512-exon-scaffold_253-1510915933:478700..479053TCONS_00055512-exon-scaffold_253-1510915933:478700..479053Clytia hemisphaericaexon
TCONS_00055512-exon-scaffold_253-1491911889:484084..484380TCONS_00055512-exon-scaffold_253-1491911889:484084..484380Clytia hemisphaericaexon
TCONS_00055512-exon-scaffold_253-1491911889:483777..483835TCONS_00055512-exon-scaffold_253-1491911889:483777..483835Clytia hemisphaericaexon
TCONS_00055512-exon-scaffold_253-1491911889:483474..483636TCONS_00055512-exon-scaffold_253-1491911889:483474..483636Clytia hemisphaericaexon
TCONS_00055512-exon-scaffold_253-1491911889:483144..483372TCONS_00055512-exon-scaffold_253-1491911889:483144..483372Clytia hemisphaericaexon
TCONS_00055512-exon-scaffold_253-1491911889:478700..479053TCONS_00055512-exon-scaffold_253-1491911889:478700..479053Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:478700..484380 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
42.5978	42.0251	27.4766	22.8913	30.459	27.1495	39.2959	44.3189	58.0043	53.5991	37.9055	35.1362	33.7499	31.0882	48.4585	63.1445	55.7006	62.1106	17.3858	21.7697	32.2601	32.2263	49.8047	49.4983	23.0803	25.6218	50.2443	33.4942	50.1278	49.1456
Blast
[Close]
BLAST of TCONS_00055512 vs. Swiss-Prot (Human)
Match: ST1C4 (Sulfotransferase 1C4 OS=Homo sapiens GN=SULT1C4 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.155e-26
Identity = 57/178 (32.02%), Postives = 97/178 (54.49%), Query Frame = 1 
Query:  382 EKELKALGSLCKTGAELVNHTPRPRTIKTHLSYEMLPPKIHEKGAKMINVIRNPRDVCVSFLNHHVLTENY--TGDLQTIAEIMLQDVGPLC-APFFTHILSYWNQRENPNLLIVHYEEMQKDIAGVIKRVAKFIGTEEYSDNQIAKLIDHTSVDKMRVNPMVNGTGVIDVITLSSIN 906
            E ++ +LGS    G E  +  P PR +KTHL + +LPP + EK  K+I V RNP+D  VS+ +   + +     G  +   E  L   G +C   +  H+  +W  ++   +L + YE+M+K+    I+++A+FIG ++  D  + K++ +TS D M+ NPM N + +   I   SI+
Sbjct:   90 EMKIPSLGS----GLEQAHAMPSPRILKTHLPFHLLPPSLLEKNCKIIYVARNPKDNMVSYYHFQRMNKALPAPGTWEEYFETFL--AGKVCWGSWHEHVKGWWEAKDKHRILYLFYEDMKKNPKHEIQKLAEFIG-KKLDDKVLDKIVHYTSFDVMKQNPMANYSSIPAEIMDHSIS 260

HSP 2 Score: 42.3578 bits (98), Expect = 4.155e-26
Identity = 19/40 (47.50%), Postives = 24/40 (60.00%), Query Frame = 3 
Query:  264 DDVWICTFPKSGTRWMQEIVSCLRNGMDFEKCICCMQHCR 383
            DD+ I T+PK+GT W QEIV  ++N  D EK      H R
Sbjct:   46 DDLLISTYPKAGTTWTQEIVELIQNEGDVEKSKRAPTHQR 85
The following BLAST results are available for this feature:
BLAST of TCONS_00055512 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ST1C44.155e-2632.02Sulfotransferase 1C4 OS=Homo sapiens GN=SULT1C4 PE... [more]
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