TCONS_00055511 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055511
Unique NameTCONS_00055511
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055511 ID=TCONS_00055511|Name=TCONS_00055511|organism=Clytia hemisphaerica|type=transcript|length=796bp
CCTTCTTTACACATATCCTGAGCTACTGGAACCAACGAGAAAATCCAAAT
CTTTTGATTGTTCACTATGAAGAGATGCAAAAGGATGTAactgGTGTCAT
CAAACGAGTGGCCAAGTTTATTGGTACAGAGGAATATTCAGATGGTCAAA
TAGCAAAACTTGTAGAGCATACATCTGTGGATAAAATGAGAGCCAATCCA
ATGGTCAATGTGACTGGACCAATTGATaaaCTAAAGGCAGCAATGAAGAA
TGAGCAGAAAGGGACTTTTATCAACACTGGAAAgacaggaggatggaaaa
acAAACTCACTGAAGAAACTATTGAGAGGTTTAAAAAATGGGAAGAGAAA
TGGTTGAAAGACACTGGATTGTTGTTTGTTTACGaggtttgattttttta
acacataataatttttttcatcacacataaattttagcaattttacgaaa
aacagtttttatattatttttatagaaattttaaaaagttgggcTACTAT
TATAAACTGGGCTTAGATTGATGTTACACTTTATTTTTTAGATTCGTAAA
AACCTTTCCTCTAAAggtgactttttattttaccatGCTGTGACAGGTGC
CTAATTATGGGGCtttgtttgttaatttttttatatccccaaaatattga
tttttattaAAGTTCATCACCTATACAGTGTGTGCCAAAAAAAGCAGATA
AATTTAATTATAAATTATGATCCTCATAAGTTATGCCAAACTGTATAATT
CATATAATTCGTATTTCAGTCTAAAAAACCTGAATATTGATTGAAC
Run BLAST on NCBI

transcript from alignment at scaffold_253:474528..476244-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055511 ID=TCONS_00055511|Name=TCONS_00055511|organism=Clytia hemisphaerica|type=transcript|length=1717bp|location=Sequence derived from alignment at scaffold_253:474528..476244- (Clytia hemisphaerica)
CCTTCTTTACACATATCCTGAGCTACTGGAACCAACGAGAAAATCCAAAT
CTTTTGATTGTTCACTATGAAGAGATGCAAAAGGATGTAACTGGTGAAAA
TTTCTTTTGAATTTGTTTTTAACGAGGTCTAATTTTAACAGTTGAGCAGG
GCATATAATGTTAAAATCTTTACATAGGTGTTTCAGGTAAGAATCCAAAA
TGGGTTGAATACACTTATCACCCTTAGCGGAAATACCTTGAAAAGGTTTG
GCAACGGCGTCAAGTTAAAAAGTACTCGTGTGAAAATTTAAGATAACTTA
GTAGATTGAAATCTTTAACCATTTTCCAGGTGTCATCAAACGAGTGGCCA
AGTTTATTGGTACAGAGGAATATTCAGATGGTCAAATAGCAAAACTTGTA
GAGCATACATCTGTGGATAAAATGAGAGCCAATCCAATGGTCAATGTGAC
TGGACCAATTGATGTAATTATTTTAAAACCAATTAATTTGAAATGAGTCT
GAGTAAAAGTTAAAAATTCTTTATGGATATTTTTAATCAAATTATGCTTT
TAAGACTTAAGAATCAGGGGGGGGTGTACAGCTGCAGGGTACATACCCAC
AGCCAGGTGGTGGTGTCTAATTTTAAATTTCATTTATTACCAGGTTCTAT
ATTTGGGGTGGGTGGGCCATTTCAATTCATTTCAAGTATCTGCTACTGAT
TTTGGTATTTGGTGGGTAAAATGGGTAAAAATGGTAAAAATTTATCAATT
TTGGCAAATCCGAAAAAAATTCCATAAAAATTAGATTTCATTTTAATTTC
ACGATTTTGGTGAGGTGAAATTGACTGCTAGGTATTACAAGGTACTTTTC
CAGAGTTATTTAGCCATACTTTCCTTGGTGACCAGCTTCCAAATAGGGGG
CGGAGGTCCAAAAAAAGTTGGTACCTTATACTATCTAAGATATCTATTAC
AAATCTTTTTGAAAATCAGGTTTATTACCCCCTGTTGCAATTATATTTCT
AGTAAACAGCTATGGTATAGCCAGGTAGAGCTGGAGTTTGCTTTATTGAA
AGAACGGGCTAATTATAGTCACATCCCTTTATTTGAATTGGATGAATAAA
ACGTTTTAATTATTTTTTTTTAACCGTTGCTTCTTTCTTCAATTTTAGAA
ACTAAAGGCAGCAATGAAGAATGAGCAGAAAGGGACTTTTATCAACACTG
GAAAGACAGGAGGATGGAAAAACAAACTCACTGAAGAAACTATTGAGAGG
TTTAAAAAATGGGAAGAGAAATGGTTGAAAGACACTGGATTGTTGTTTGT
TTACGAGGTTTGATTTTTTTAACACATAATAATTTTTTTCATCACACATA
AATTTTAGCAATTTTACGAAAAACAGTTTTTATATTATTTTTATAGAAAT
TTTAAAAAGTTGGGCTACTATTATAAACTGGGCTTAGATTGATGTTACAC
TTTATTTTTTAGATTCGTAAAAACCTTTCCTCTAAAGGTGACTTTTTATT
TTACCATGCTGTGACAGGTGCCTAATTATGGGGCTTTGTTTGTTAATTTT
TTTATATCCCCAAAATATTGATTTTTATTAAAGTTCATCACCTATACAGT
GTGTGCCAAAAAAAGCAGATAAATTTAATTATAAATTATGATCCTCATAA
GTTATGCCAAACTGTATAATTCATATAATTCGTATTTCAGTCTAAAAAAC
CTGAATATTGATTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034921XLOC_034921Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055511-exon-scaffold_253-1575043694:476152..476244TCONS_00055511-exon-scaffold_253-1575043694:476152..476244Clytia hemisphaericaexon
TCONS_00055511-exon-scaffold_253-1575043694:475782..475915TCONS_00055511-exon-scaffold_253-1575043694:475782..475915Clytia hemisphaericaexon
TCONS_00055511-exon-scaffold_253-1575043694:474528..475096TCONS_00055511-exon-scaffold_253-1575043694:474528..475096Clytia hemisphaericaexon
TCONS_00055511-exon-scaffold_253-1510915933:476152..476244TCONS_00055511-exon-scaffold_253-1510915933:476152..476244Clytia hemisphaericaexon
TCONS_00055511-exon-scaffold_253-1510915933:475782..475915TCONS_00055511-exon-scaffold_253-1510915933:475782..475915Clytia hemisphaericaexon
TCONS_00055511-exon-scaffold_253-1510915933:474528..475096TCONS_00055511-exon-scaffold_253-1510915933:474528..475096Clytia hemisphaericaexon
TCONS_00055511-exon-scaffold_253-1491911889:476152..476244TCONS_00055511-exon-scaffold_253-1491911889:476152..476244Clytia hemisphaericaexon
TCONS_00055511-exon-scaffold_253-1491911889:475782..475915TCONS_00055511-exon-scaffold_253-1491911889:475782..475915Clytia hemisphaericaexon
TCONS_00055511-exon-scaffold_253-1491911889:474528..475096TCONS_00055511-exon-scaffold_253-1491911889:474528..475096Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:474528..476244 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.46039	4.1133	3.10402	1.52986	14.3181	10.891	16.0311	17.1857	12.2746	13.1674	10.1671	11.1512	12.6725	10.2074	15.1868	17.5408	8.55433	9.72261	6.26476	5.73965	8.40671	8.25331	16.0935	13.8777	4.06027	6.08843	19.0631	11.5232	20.1742	16.5505
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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