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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055500 ID=TCONS_00055500|Name=TCONS_00055500|organism=Clytia hemisphaerica|type=transcript|length=1225bpRun BLAST on NCBI transcript from alignment at scaffold_253:410823..466714- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055500 ID=TCONS_00055500|Name=TCONS_00055500|organism=Clytia hemisphaerica|type=transcript|length=55892bp|location=Sequence derived from alignment at scaffold_253:410823..466714- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055500 vs. Swiss-Prot (Human)
Match: CSN5 (COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1 SV=4) HSP 1 Score: 483.026 bits (1242), Expect = 8.927e-170 Identity = 239/302 (79.14%), Postives = 268/302 (88.74%), Query Frame = 2
Query: 140 YSQEKQQEILSRKP*TKDPHYFKNIKVSALALLKMVMHARSGGTLEVMGLMLGKVDGDTMIVMDAFALPVEGTETRVNAQAAAYEYMTQYIESSKSVGRLENAIGWYHSHPGYGCWLSGIDVSTQMVNQQFQEPFVAIVIDPTRTISAGKVNMGAFRTYPKGYKPPDESPSEYQTIPLNKIEDFGVHCKQYYSLEVSYFKSALDQKLLDSLWNKYWINTLSSSTLFTNADYVTNQILDLSEKLEQSISQVSRG--MSYAENWDKKDEPGKLQKANKDCCKLNIEALHGLMSQVLKNQLFNNV 1039
Y +++QQEIL+ KP TKD HYFK K+SALALLKMVMHARSGG LEVMGLMLGKVDG+TMI+MD+FALPVEGTETRVNAQAAAYEYM YIE++K VGRLENAIGWYHSHPGYGCWLSGIDVSTQM+NQQFQEPFVA+VIDPTRTISAGKVN+GAFRTYPKGYKPPDE PSEYQTIPLNKIEDFGVHCKQYY+LEVSYFKS+LD+KLL+ LWNKYW+NTLSSS+L TNADY T Q+ DLSEKLEQS +Q+ RG M E D+K E KL KA +D CK IEA+HGLMSQV+K++LFN +
Sbjct: 31 YDKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHCKQYYALEVSYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDLSEKLEQSEAQLGRGSFMLGLETHDRKSED-KLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQI 331 The following BLAST results are available for this feature:
BLAST of TCONS_00055500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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