TCONS_00055488 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055488
Unique NameTCONS_00055488
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2197

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055488 ID=TCONS_00055488|Name=TCONS_00055488|organism=Clytia hemisphaerica|type=transcript|length=2197bp
GTTTTCGAAGTTATTcagtgtttttctttcaaaattgacAAGCACTCTCA
AGCTGAAATTCTGAAATTCTTTCAACCACAAGTAGTCCTggattgcttat
aaaagaaatacaTCCATTAATCACAACCAATTCAAATAACTGCATTTGAA
ATTGTTCATCTCTAATTAACAAAAGAGAGCATCTTTGCACAACTAATTGC
TTTACTATTGATAATGTCATTTTATTACTTGTATGAGAAAGCAGCTTGTG
CAAACGATCACTGTTGGTtggacaaaattaatttttgaaatttatcctGA
AAACTTCATGTTTTTACAACCACTCTTTAGtatatattttacattttgag
AATACATAAAATAAGGAAACGTTGGACCGTTGAATCTCAAATGTGTCTGT
TATTTGTGATATGGTACTTCAGTTGTGTTATTACCACATTGCATGCGGCC
AGATTCGACCAGTACGGTTACCATGGAGATACCAATGAACGGTTCTTTGA
TCAGaTATACCCCCGACAAAGTCAGCTCTACCGAACTACCCCGAGGGAGA
CAAAAGTCATGAACGCTTTCATAACacaactcaaaacaaaatgcaaGAAT
GACGTCATCTGTAAAACCTTACTGGAAAACATTTTAGTAAACAGTTTGAC
AAGAAATCTACAGTCAATGAGTCCAATCGGGGTAAAGTACCTTCAACTGC
ACGATCCTGTAAAGAAACTTTACATTGCCATTTTGTCAGATCCTGATCTC
TACATGTACTTTAACCAAATGTTTGAGCAACAAAATCCTTCAGGCATTGT
AGAAAATTGGCAAGAGTTCATCGTTCTTTTGAATTATGTGATGACATACC
CACCACAGTATAATCGGTACAGTGACAGCTTTTTGTTGTGTTGTCCCATA
AATGCTCTCCTAGACTGGCCTTCATCCACACCTGCGGGCCGCGCGTGTTT
CTTGCACGAAAATCTGAACAAACTTGCTAAAGACATTCTAAACTACTGGG
GTAAATACCTCCAAAGTAAGGCTTCGACAACTTTTTTGAGTGACTCGTTA
AACGGATGGTTCAGTGACGTAGCTCTTGAGGCCATGAAAGATTCGCATGG
CAgaacatttcaacaacaattCGTATGTGATCCAATGAAACCACATTGGG
GATTTCAAAGTTGGGATGATTTCTTCACCAGAAAGTTTCGTGAAGGGATG
CGACCTCTTCCATATCCAGACAGTTCAAAGTTCATCACAAACGCTTGTGA
ATCAGTACCCATCAAGATTGCCAGAGATGTCAAAGCTAGAGATATGTTTT
GGATCAAGGAACAACCCTACTCCCTTTCTCATATGCTCAACAATAACAGA
TTACACAAATACTTCATAGGAGGAACAGTGTACCAAGGCTTCTTAAGCAC
CAATGCTTACCATCGCTGGCATAGTCCAATCTCTGGGACCATTATTGATT
ATGAACATATCCAAGGTGCTTACTTTTCACAAGCATACAGTGTTGATGGT
GACTCACATGCACCTGTTAAATCTCAAAGCTATTTAAGTCAAGTCGCAGC
TCGTGCAGCCATTTACATTTTAGCAGATGATCCTGAAATAGGCGTCATTT
GTTTTCTCTCCATCGGCATGGTAGAAATCTCTTCGAATGAAATAACAGTT
CAAAAAGGACAACATGTCGACAAAGGGGATGAATTAGGGATGTTTCATTA
TGGTGGTTCGTCTCACTGTTTGATATTCCCACCCCATCTAGATGTTGTGT
TTGATGTTGTCCCAACTGATGTCTCGCACGAAATGCTATTATTACGGGAA
CCTAATATTCATGTTCGAAGCAAAATTGCCACCGTTCGATTGAAAACTCA
ACATCATGGAAAGATTGCTCGTGAAGAGTTGAGAAGATACACAGTGGACA
CTTTTTATAGAAAGCCTTAAACAAATTTACACACATTATACTAACCCTTT
TTACTTTAATGACGACTAAAGGCTTTCGATTGGCTTTTCGATAGGTCTAC
ATTTTCATCATAGATCGAATAAACGTcatccccgtgtattccaggcttta
tatGTATACACTAGGGAAAGAAATAGAGCGATTATTTCGTCTACATATAG
GAGGAGTATTATAATGATATTGAATTACAATTGGATTCCTAGTAGTGTTA
ataattactctcgggtacctaatagccggggggtttggaataagcgc
Run BLAST on NCBI

protein sequence of TCONS_00055488-protein

>TCONS_00055488-protein ID=TCONS_00055488-protein|Name=TCONS_00055488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp
MCLLFVIWYFSCVITTLHAARFDQYGYHGDTNERFFDQIYPRQSQLYRTT
PRETKVMNAFITQLKTKCKNDVICKTLLENILVNSLTRNLQSMSPIGVKY
LQLHDPVKKLYIAILSDPDLYMYFNQMFEQQNPSGIVENWQEFIVLLNYV
MTYPPQYNRYSDSFLLCCPINALLDWPSSTPAGRACFLHENLNKLAKDIL
NYWGKYLQSKASTTFLSDSLNGWFSDVALEAMKDSHGRTFQQQFVCDPMK
PHWGFQSWDDFFTRKFREGMRPLPYPDSSKFITNACESVPIKIARDVKAR
DMFWIKEQPYSLSHMLNNNRLHKYFIGGTVYQGFLSTNAYHRWHSPISGT
IIDYEHIQGAYFSQAYSVDGDSHAPVKSQSYLSQVAARAAIYILADDPEI
GVICFLSIGMVEISSNEITVQKGQHVDKGDELGMFHYGGSSHCLIFPPHL
DVVFDVVPTDVSHEMLLLREPNIHVRSKIATVRLKTQHHGKIAREELRRY
TVDTFYRKP
Run BLAST on NCBI

transcript from alignment at scaffold_253:355821..360453-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055488 ID=TCONS_00055488|Name=TCONS_00055488|organism=Clytia hemisphaerica|type=transcript|length=4633bp|location=Sequence derived from alignment at scaffold_253:355821..360453- (Clytia hemisphaerica)
GTTTTCGAAGTTATTCAGTGTTTTTCTTTCAAAATTGACAAGCACTCTCA AGCTGAAATTCTGAAATTCTTTCAACCACAAGTAGTCCTGGATTGCTTAT AAAAGAAATACATCCATTAATCACAACCAATTCAAATAACTGCATTTGAA ATTGTTCATCTCTAATTAACAAAAGAGAGCATCTTTGCACAACTAATTGC TTTACTATTGATAATGTCATTTTATTACTTGTATGAGAAAGCAGCTTGTG CAAACGATCACTGTTGGTTGGACAAAATTAATTTTTGAAATTTATCCTGA AAACTTCATGTTTTTACAACCACTCTTTAGTATATATTTTACATTTTGAG AATACATAAAATAAGGAAACGTTGGACCGTTGAATCTCAAATGTGTCTGT TATTTGTGATATGGTACTTCAGTTGGTAAGTTTATTCGTTTGGGTTTTTT TGCCTGTCCAATCTTCAACCTCCTTCCATCAAATCATCCATGTTTCTTTC GCATCAAATCAATCTTAAACACTACATATTCCAGGGGGTGAACAAGCATT TACAGTGGGTAATCGGAGAAGAATTTCCAGGGGGTACAAAGAAGTAGTTT TTCATTTTTGCAGGGGGTAAAAAGATATTCTAAAATCTCCAGGGGATAAA AGACTGATTTTTGCACATCCACCCTCAAGTATGAAAATAATTTTTCCAAA TATTGCTATTTCCAGGGGGTATCTCTACGAATCTTTTCTAGGCTTGAAAA TGTTCGTCCACCCCCTGTATTTGGAATTTTAATGGAACAGCCCATTAGGA CCTCGTTAATTTTGATTTTTCTTGAGGGCGCATGGCAACGTTGTTTTGAA TGAATTGACTACTTTAATCGTAGAAATTTTAGCGAGATTAATTTTAGCGT ATATTAGCGAGCCGGGAAAATCTTGATATTTTTTGGATTTATTTTAGCGA ATCACGATTTCAAAAAATTTCGTGTGGATAAATTTTAGCGCATACTCGTC TGACAAAAATTTCGCGTGGATTAATTTTAGCGAGGGCGATGATTTTGAAG AAAAAATAATGTTTTTAATAAAAAAATCAATATAGTCACAATCCGTGCCA TAATATTTTTGCACTTTTGGCTAATTTACCATTTTTCGAAAATTGAAGTT CGAGCGAGAATGTCAATTTTAGGCCCTCAACTTGATTNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCTT CGAACCTACTTTAGAGCACTTACAAATCGATTGTGGTTTCAAAACACCCC GGTGAATTTCCCTTTTGTGCCAAGTATTTTGTCCCTGATTGCACATGTCT TTGTAACACAATTCTTGACTGAGAACAGAAAAACTTTGAAATTTACGCCC CCATTACTAGTTTTTGAAAAAATTATGAAAATGATAACAAAATGATTAAA ATGAAAGAAAAAACATACTGGATTTATTTTAGCGAATCAGCTTTTCGAAA AATTTCGCGCGGATAAATTTTAGCGATCTGTCAATTCGGCGCGTTTTAGC GAGATTTATTTTAGCGAATCAGCTTTTCGAAAAATTTCGCGCGGATAAAT TTTAGCGATCTGTCAATTCGGCGCGTTTTAGCGAGATTTATTTTAGCGAA AATAGGGAAAACTCGCTAAAACGCTAAAATTAATCCCGCTAAAATTTTAC GATTAAAGTAAACAACCTTGCTAGAATCTGTAAATATTGATATGATATGT GTTAAAATCTATTGTTTTAAATGGTCGGTGATACTATTCAATTTCTATTC TAGTGTTATTACCACATTGCATGCGGCCAGATTCGACCAGTACGGTTACC ATGGAGATACCAATGAACGGTTCTTTGATCAGGTGAGATGATTGTATTGA ATGTACACTTCTGAGAGCTGCCATACTTATAACGACTGACTTTTCTACTT AGAATACATTTCTGAGAGTCGATCTCAGCATAGAGGTATAAATAAAGACA GGAGATGAATTTGTCGGTAATTGGTCGTTAAAGTCTTTTGATTTCTTTTA TGTAATAAATCAAAAGAAATTCTAGGCTCGCCCGACGAAATNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNTGGAGGAAAGTATTAAGCAATAGAGTTCACCTTGAAGAAAATGT TGATCGAAAAATCTTGTCATTTGATGAAGGATTGCAAAGTTTACAGGCCT TATTTTAATCCAAATATTTTCTTACACCTATGCCAGAAACAATGAATCTC GTCTTATCTTATTTCCAACACTTATGTTAGCCAATAAGATTTCACCTATC AACAAAAGAGCTCATTAAAAATGCACGATATATGAGATTATGAGCATGCA TACCTCGTAATTTTTTTAATCGTAGGGCGAGCATGGTTACAATAGCATAC TTCTCCTGTTTCTTTATACCTCCATGATCTCAGTAATGCACAAAGTTTTT GTGGAGAGCAGGTTTTAATGCAAATGTTTTTCAAATTCAGATATACCCCC GACAAAGTCAGCTCTACCGAACTACCCCGAGGGAGACAAAAGTCATGAAC GCTTTCATAACACAACTCAAAACAAAATGCAAGAATGACGTCATCTGTAA AACCTTACTGGAAAACATTTTAGTAAACAGTTTGACAAGAAATCTACAGT CAATGAGTCCAATCGGGGTAAAGTACCTTCAACTGCACGATCCTGTAAAG AAACTTTACATTGCCATTTTGTCAGATCCTGATCTCTACATGTACTTTAA CCAAATGTTTGAGCAACAAAATCCTTCAGGCATTGTAGAAAATTGGCAAG AGTTCATCGTTCTTTTGAATTATGTGATGACATACCCACCACAGTATAAT CGGTACAGTGACAGCTTTTTGTTGTGTTGTCCCATAAATGCTCTCCTAGA CTGGCCTTCATCCACACCTGCGGGCCGCGCGTGTTTCTTGCACGAAAATC TGAACAAACTTGCTAAAGACATTCTAAACTACTGGGGTAAATACCTCCAA AGTAAGGCTTCGACAACTTTTTTGAGTGACTCGTTAAACGGATGGTTCAG TGACGTAGCTCTTGAGGCCATGAAAGATTCGCATGGCAGAACATTTCAAC AACAATTCGTATGTGATCCAATGAAACCACATTGGGGATTTCAAAGTTGG GATGATTTCTTCACCAGAAAGTTTCGTGAAGGGATGCGACCTCTTCCATA TCCAGACAGTTCAAAGTTCATCACAAACGCTTGTGAATCAGTACCCATCA AGATTGCCAGAGATGTCAAAGCTAGAGATATGTTTTGGATCAAGGAACAA CCCTACTCCCTTTCTCATATGCTCAACAATAACAGATTACACAAATACTT CATAGGAGGAACAGTGTACCAAGGCTTCTTAAGCACCAATGCTTACCATC GCTGGCATAGTCCAATCTCTGGGACCATTATTGATTATGAACATATCCAA GGTGCTTACTTTTCACAAGCATACAGTGTTGATGGTGACTCACATGCACC TGTTAAATCTCAAAGCTATTTAAGTCAAGTCGCAGCTCGTGCAGCCATTT ACATTTTAGCAGATGATCCTGAAATAGGCGTCATTTGTTTTCTCTCCATC GGCATGGTAGAAATCTCTTCGAATGAAATAACAGTTCAAAAAGGACAACA TGTCGACAAAGGGGATGAATTAGGGATGTTTCATTATGGTGGTTCGTCTC ACTGTTTGATATTCCCACCCCATCTAGATGTTGTGTTTGATGTTGTCCCA ACTGATGTCTCGCACGAAATGCTATTATTACGGGAACCTAATATTCATGT TCGAAGCAAAATTGCCACCGTTCGATTGAAAACTCAACATCATGGAAAGA TTGCTCGTGAAGAGTTGAGAAGATACACAGTGGACACTTTTTATAGAAAG CCTTAAACAAATTTACACACATTATACTAACCCTTTTTACTTTAATGACG ACTAAAGGCTTTCGATTGGCTTTTCGATAGGTCTACATTTTCATCATAGA TCGAATAAACGTCATCCCCGTGTATTCCAGGCTTTATATGTATACACTAG GGAAAGAAATAGAGCGATTATTTCGTCTACATATAGGAGGAGTATTATAA TGATATTGAATTACAATTGGATTCCTAGTAGTGTTAATAATTACTCTCGG GTACCTAATAGCCGGGGGGTTTGGAATAAGCGC

Coding sequence (CDS) from alignment at scaffold_253:355821..360453-

>TCONS_00055488 ID=TCONS_00055488|Name=TCONS_00055488|organism=Clytia hemisphaerica|type=CDS|length=4590bp|location=Sequence derived from alignment at scaffold_253:355821..360453- (Clytia hemisphaerica)
ATATACCCCCGACAAAGTCAGCTCTACCGAACTACCCCGAGGGAGACAAA
AGTCATGAACGCTTTCATAACACAACTCAAAACAAAATGCAAGAATGACG
TCATCTGTAAAACCTTACTGGAAAACATTTTAGTAAACAGTTTGACAAGA
AATCTACAGTCAATGAGTCCAATCGGGGTAAAGTACCTTCAACTGCACGA
TCCTGTAAAGAAACTTTACATTGCCATTTTGTCAGATCCTGATCTCTACA
TGTACTTTAACCAAATGTTTGAGCAACAAAATCCTTCAGGCATTGTAGAA
AATTGGCAAGAGTTCATCGTTCTTTTGAATTATGTGATGACATACCCACC
ACAGTATAATCGGTACAGTGACAGCTTTTTGTTGTGTTGTCCCATAAATG
CTCTCCTAGACTGGCCTTCATCCACACCTGCGGGCCGCGCGTGTTTCTTG
CACGAAAATCTGAACAAACTTGCTAAAGACATTCTAAACTACTGGGGTAA
ATACCTCCAAAGTAAGGCTTCGACAACTTTTTTGAGTGACTCGTTAAACG
GATGGTTCAGTGACGTAGCTCTTGAGGCCATGAAAGATTCGCATGGCAGA
ACATTTCAACAACAATTCGTATGTGATCCAATGAAACCACATTGGGGATT
TCAAAGTTGGGATGATTTCTTCACCAGAAAGTTTCGTGAAGGGATGCGAC
CTCTTCCATATCCAGACAGTTCAAAGTTCATCACAAACGCTTGTGAATCA
GTACCCATCAAGATTGCCAGAGATGTCAAAGCTAGAGATATGTTTTGGAT
CAAGGAACAACCCTACTCCCTTTCTCATATGCTCAACAATAACAGATTAC
ACAAATACTTCATAGGAGGAACAGTGTACCAAGGCTTCTTAAGCACCAAT
GCTTACCATCGCTGGCATAGTCCAATCTCTGGGACCATTATTGATTATGA
ACATATCCAAGGTGCTTACTTTTCACAAGCATACAGTGTTGATGGTGACT
CACATGCACCTGTTAAATCTCAAAGCTATTTAAGTCAAGTCGCAGCTCGT
GCAGCCATTTACATTTTAGCAGATGATCCTGAAATAGGCGTCATTTGTTT
TCTCTCCATCGGCATGGTAGAAATCTCTTCGAATGAAATAACAGTTCAAA
AAGGACAACATGTCGACAAAGGGGATGAATTAGGGATGTTTCATTATGGT
GGTTCGTCTCACTGTTTGATATTCCCACCCCATCTAGATGTTGTGTTTGA
TGTTGTCCCAACTGATGTCTCGCACGAAATGCTATTATTACGGGAACCTA
ATATTCATGTTCGAAGCAAAATTGCCACCGTTCGATTGAAAACTCAACAT
CATGGAAAGATTGCTCGTGAAGAGTTGAGAAGATACACAGTGGACACTTT
TTATAGAAAGCCTTAATGTTATTACCACATTGCATGCGGCCAGATTCGAC
CAGTACGGTTACCATGGAGATACCAATGAACGGTTCTTTGATCAGATGTG
TCTGTTATTTGTGATATGGTACTTCAGTTGATATACCCCCGACAAAGTCA
GCTCTACCGAACTACCCCGAGGGAGACAAAAGTCATGAACGCTTTCATAA
CACAACTCAAAACAAAATGCAAGAATGACGTCATCTGTAAAACCTTACTG
GAAAACATTTTAGTAAACAGTTTGACAAGAAATCTACAGTCAATGAGTCC
AATCGGGGTAAAGTACCTTCAACTGCACGATCCTGTAAAGAAACTTTACA
TTGCCATTTTGTCAGATCCTGATCTCTACATGTACTTTAACCAAATGTTT
GAGCAACAAAATCCTTCAGGCATTGTAGAAAATTGGCAAGAGTTCATCGT
TCTTTTGAATTATGTGATGACATACCCACCACAGTATAATCGGTACAGTG
ACAGCTTTTTGTTGTGTTGTCCCATAAATGCTCTCCTAGACTGGCCTTCA
TCCACACCTGCGGGCCGCGCGTGTTTCTTGCACGAAAATCTGAACAAACT
TGCTAAAGACATTCTAAACTACTGGGGTAAATACCTCCAAAGTAAGGCTT
CGACAACTTTTTTGAGTGACTCGTTAAACGGATGGTTCAGTGACGTAGCT
CTTGAGGCCATGAAAGATTCGCATGGCAGAACATTTCAACAACAATTCGT
ATGTGATCCAATGAAACCACATTGGGGATTTCAAAGTTGGGATGATTTCT
TCACCAGAAAGTTTCGTGAAGGGATGCGACCTCTTCCATATCCAGACAGT
TCAAAGTTCATCACAAACGCTTGTGAATCAGTACCCATCAAGATTGCCAG
AGATGTCAAAGCTAGAGATATGTTTTGGATCAAGGAACAACCCTACTCCC
TTTCTCATATGCTCAACAATAACAGATTACACAAATACTTCATAGGAGGA
ACAGTGTACCAAGGCTTCTTAAGCACCAATGCTTACCATCGCTGGCATAG
TCCAATCTCTGGGACCATTATTGATTATGAACATATCCAAGGTGCTTACT
TTTCACAAGCATACAGTGTTGATGGTGACTCACATGCACCTGTTAAATCT
CAAAGCTATTTAAGTCAAGTCGCAGCTCGTGCAGCCATTTACATTTTAGC
AGATGATCCTGAAATAGGCGTCATTTGTTTTCTCTCCATCGGCATGGTAG
AAATCTCTTCGAATGAAATAACAGTTCAAAAAGGACAACATGTCGACAAA
GGGGATGAATTAGGGATGTTTCATTATGGTGGTTCGTCTCACTGTTTGAT
ATTCCCACCCCATCTAGATGTTGTGTTTGATGTTGTCCCAACTGATGTCT
CGCACGAAATGCTATTATTACGGGAACCTAATATTCATGTTCGAAGCAAA
ATTGCCACCGTTCGATTGAAAACTCAACATCATGGAAAGATTGCTCGTGA
AGAGTTGAGAAGATACACAGTGGACACTTTTTATAGAAAGCCTTAATGTT
ATTACCACATTGCATGCGGCCAGATTCGACCAGTACGGTTACCATGGAGA
TACCAATGAACGGTTCTTTGATCAGATGTGTCTGTTATTTGTGATATGGT
ACTTCAGTTGATATACCCCCGACAAAGTCAGCTCTACCGAACTACCCCGA
GGGAGACAAAAGTCATGAACGCTTTCATAACACAACTCAAAACAAAATGC
AAGAATGACGTCATCTGTAAAACCTTACTGGAAAACATTTTAGTAAACAG
TTTGACAAGAAATCTACAGTCAATGAGTCCAATCGGGGTAAAGTACCTTC
AACTGCACGATCCTGTAAAGAAACTTTACATTGCCATTTTGTCAGATCCT
GATCTCTACATGTACTTTAACCAAATGTTTGAGCAACAAAATCCTTCAGG
CATTGTAGAAAATTGGCAAGAGTTCATCGTTCTTTTGAATTATGTGATGA
CATACCCACCACAGTATAATCGGTACAGTGACAGCTTTTTGTTGTGTTGT
CCCATAAATGCTCTCCTAGACTGGCCTTCATCCACACCTGCGGGCCGCGC
GTGTTTCTTGCACGAAAATCTGAACAAACTTGCTAAAGACATTCTAAACT
ACTGGGGTAAATACCTCCAAAGTAAGGCTTCGACAACTTTTTTGAGTGAC
TCGTTAAACGGATGGTTCAGTGACGTAGCTCTTGAGGCCATGAAAGATTC
GCATGGCAGAACATTTCAACAACAATTCGTATGTGATCCAATGAAACCAC
ATTGGGGATTTCAAAGTTGGGATGATTTCTTCACCAGAAAGTTTCGTGAA
GGGATGCGACCTCTTCCATATCCAGACAGTTCAAAGTTCATCACAAACGC
TTGTGAATCAGTACCCATCAAGATTGCCAGAGATGTCAAAGCTAGAGATA
TGTTTTGGATCAAGGAACAACCCTACTCCCTTTCTCATATGCTCAACAAT
AACAGATTACACAAATACTTCATAGGAGGAACAGTGTACCAAGGCTTCTT
AAGCACCAATGCTTACCATCGCTGGCATAGTCCAATCTCTGGGACCATTA
TTGATTATGAACATATCCAAGGTGCTTACTTTTCACAAGCATACAGTGTT
GATGGTGACTCACATGCACCTGTTAAATCTCAAAGCTATTTAAGTCAAGT
CGCAGCTCGTGCAGCCATTTACATTTTAGCAGATGATCCTGAAATAGGCG
TCATTTGTTTTCTCTCCATCGGCATGGTAGAAATCTCTTCGAATGAAATA
ACAGTTCAAAAAGGACAACATGTCGACAAAGGGGATGAATTAGGGATGTT
TCATTATGGTGGTTCGTCTCACTGTTTGATATTCCCACCCCATCTAGATG
TTGTGTTTGATGTTGTCCCAACTGATGTCTCGCACGAAATGCTATTATTA
CGGGAACCTAATATTCATGTTCGAAGCAAAATTGCCACCGTTCGATTGAA
AACTCAACATCATGGAAAGATTGCTCGTGAAGAGTTGAGAAGATACACAG
TGGACACTTTTTATAGAAAGCCTTAATGTTATTACCACATTGCATGCGGC
CAGATTCGACCAGTACGGTTACCATGGAGATACCAATGAACGGTTCTTTG
ATCAGATGTGTCTGTTATTTGTGATATGGTACTTCAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034911XLOC_034911Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055488-proteinTCONS_00055488-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055488-exon-scaffold_253-1575043694:360029..360453TCONS_00055488-exon-scaffold_253-1575043694:360029..360453Clytia hemisphaericaexon
TCONS_00055488-exon-scaffold_253-1575043694:358372..358450TCONS_00055488-exon-scaffold_253-1575043694:358372..358450Clytia hemisphaericaexon
TCONS_00055488-exon-scaffold_253-1575043694:355821..357513TCONS_00055488-exon-scaffold_253-1575043694:355821..357513Clytia hemisphaericaexon
TCONS_00055488-exon-scaffold_253-1510915933:360029..360453TCONS_00055488-exon-scaffold_253-1510915933:360029..360453Clytia hemisphaericaexon
TCONS_00055488-exon-scaffold_253-1510915933:358372..358450TCONS_00055488-exon-scaffold_253-1510915933:358372..358450Clytia hemisphaericaexon
TCONS_00055488-exon-scaffold_253-1510915933:355821..357513TCONS_00055488-exon-scaffold_253-1510915933:355821..357513Clytia hemisphaericaexon
TCONS_00055488-exon-scaffold_253-1491911889:360029..360453TCONS_00055488-exon-scaffold_253-1491911889:360029..360453Clytia hemisphaericaexon
TCONS_00055488-exon-scaffold_253-1491911889:358372..358450TCONS_00055488-exon-scaffold_253-1491911889:358372..358450Clytia hemisphaericaexon
TCONS_00055488-exon-scaffold_253-1491911889:355821..357513TCONS_00055488-exon-scaffold_253-1491911889:355821..357513Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:355821..360453 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.625208 0.48753 0.303127 0.237499 0.337118 0.266414 3.72013 3.63409 5.34393 3.97194 2.19514 2.96411 5.20686 6.8396 3.33686 3.14712 1.51452 1.11381 3.2093 1.7486 0.329567 0.557423 0.532959 0.596271 0.536618 0.478977 0.614384 0.365935 0.257803 0.26248
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022237PSDC
IPR003817PS_Dcarbxylase
Vocabulary: Biological Process
TermDefinition
GO:0008654phospholipid biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0004609phosphatidylserine decarboxylase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008654 phospholipid biosynthetic process
molecular_function GO:0004609 phosphatidylserine decarboxylase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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