TCONS_00055480 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055480
Unique NameTCONS_00055480
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1694

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055480 ID=TCONS_00055480|Name=TCONS_00055480|organism=Clytia hemisphaerica|type=transcript|length=1694bp
TTAgaatacaaaaaaatgaagtaTCACATTCATCTTGGTAATACTTTGCA
ATCAAAAGTTGCACATTTTGTGTCACTATATGTAGGTATACCAGAAGAGT
CTATTCATCTTGATTCAAAAGAAGATTTAGATTGTGAATATCCTGTATGT
GTTATGAGAGATGAAGGTCTTGTTGTATCAGGACTATGCCATGCAGCTCG
TCAATCAATAAAATTTGCTTGCTCAAACAGTACTGTTGAAGGTAGAAAGC
AGAAATTTGAATCACTGCTGGGCTACAAGCAAAATTGTTTAAAGGCAAAT
GCTGTGGTTAGCAACTGGACCAGATTTTGTGAAGTTACATTTCCAAATGC
tattataaaatttataaaagatttgaaaTCTCAACCTTCAACAGTAATAA
TTCCTGAAGAGCTGATTGCATTAGAAAAAGAATTTGCTATCCCGAAGAAG
ACTCCAAATCCAATGAAGTATTTCAAAGGCAGAAAAAAAGATGCACTCAA
AACTAAAGACTCCATAGATCTGAAAATCATTCCTTGTGATTCTATTGAAA
CTGTTTGGTATCGATGCAAGTTTGGAACAGAACAGCCAATAAAGATATCA
AAAATGGACAGAATTATtgactttgaaaatattaacTCTAAAAAGGATAT
CAATTGGCCATTTCTTTCTGGCCTGAATTTGACAGTACTAGATCTTATAG
TGTTGGCTGGTTTTCTTGAGCTCTTTGCAGAGGTTTGTTCTTTGAAGTTG
ATGAAAAAGCTGCTTGAGAAGCTTCCCTGTATAGAAAAATGGATTCTAAA
TTCTTTTTCTTGTGAAGAGCTGTTCCCTCCCATCAttcaaatttggtcta
accatTTGGATCAAAATGTTGGCAATACTGAAATCATTATGCCAACAAAT
GAAGAAGAGATCAAACATGtCTCTTTCACTGAAAAAAGTGGTAATCCAAA
GCAAGTCCATGCCAAAATCACCAAGGCCCTAccaacaataaaaaatatac
tCGAGCAACATCGCTTGAATTCAATTGGATTTggagaaaataatgaaaat
aaaacaatatctTGGGAAGATTTTCCAAATGAAGTAGACCCTAGTGGAGg
aGAGCTCAATCCAGACAGAAGTAAAAGGAAACGTCAACAGATTGAAAATA
TGGTTTCAAGAATTTTGCCATTGTTGAGGACAGGAGATAAGATTGTTGAG
TTTTGTGCAGGAGGGGGACACCTAGGAATAGTTGTTGCTTATCTACGACC
AGACTGCCAGGTCGTTTTACTTGACAATAAAGAAGAATCAATGAATCGTG
CCTGCTCTCGTATCAAATCATTAGGGTTGAAGAATGTCACTTTCTATCTG
ACAAACCTGGAGTATTATAATGGGTCTTTTGACATCGGAACAACTTTGCA
TGCTTGTGGAACAGCCACTGATTTGGTGCTCAAGAAATGTATCAATGATG
GGTATGTATCACAACTATTTTGTTTTATAGCCCTGCaatacaactgtcaa
tcatttttaagaaaactgattGGATGATTAATGTCACGTGGCCGGTCAAT
ATTTCTCCATAGTGACCAGATGAAATTgacatcattaaaatgtcaattac
ttttattactttatttttgcaggGCTATAATGGATTATTAACCTCAGAAG
CCTGTCTCTCTTGCAAAATATCGACCTCGTTCGCTCGTATTGGA
Run BLAST on NCBI

transcript from alignment at scaffold_253:242600..246354-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055480 ID=TCONS_00055480|Name=TCONS_00055480|organism=Clytia hemisphaerica|type=transcript|length=3755bp|location=Sequence derived from alignment at scaffold_253:242600..246354- (Clytia hemisphaerica)
TTAGAATACAAAAAAATGAAGTATCACATTCATCTTGGTAATACTTTGCA
ATCAAAAGTTGCACATTTTGTGTCACTATATGTAGGTATACCAGAAGAGT
CTATTCATCTTGATTCAAAAGAAGATTTAGATTGTGAATATCCTGTATGT
GTTATGAGAGATGAAGGTCTTGTTGTATCAGGACTATGCCATGCAGCTCG
TCAATCAATAAAATTTGCTTGCTCAAACAGTACTGTTGAAGGTAGAAAGC
AGAAATTTGAATCACTGCTGGTATGTTCACTTTTTTTGCTAGCTATTGAG
TTTAGTAAAAAACTTTTCTACATCATCCACTTCCAGTTTTTTTTTGAAAA
TCAATTGCTAACCGGTTGGAGTAGTTTCTTAGATGGGACTAAATTTTTTG
CAGGTATTTTTATCTAAACAAGTTGAGGAAGTATAAATTAATTCTAGAAT
TTAGATGAATTCAAAATATCACAATGGAAATGGCAAAAAGGTTGCTCATT
AATAAGAGGGAAAAGTCTACGTCACAAGTTTTTTAGATCTTGAATTTTCA
ACTCTAGGTTTTAAGAAATTTATGATATACTAGCAAACCGACCCATGTTT
TGCTCAAGGTCTTCCCATAGAACAAAAATTAAATTTGTCTTGTCTTATAT
TATATAAATATTTTTTAAGCATTTTTCTTATTAAAGAAAAAAATGTTCCA
TCAATCTTTAAATATTATTTTATGCAACTTTAAGGTCTAAAGAGCAATCG
CTCTATTTTCTTTTCTTTGTTAGGGCTACAAGCAAAATTGTTTAAAGGCA
AATGCTGTGGTAAGTATTTAGCGTAATTTTAGATATGTATATAGTATATA
TATTTGATTAAATTTGATGAATGTTTACCTTAAGAGAACTAATTTTCATG
GGAACTTATTTTTACATCACTTATTTTCAAGGTGCGAGGGTACTAAATTT
GCGCATTTTGCAGAATTAATTTCTGCGGTTGACACCCACTTTTTACCAAA
ATTGTTTTATATTCCTAAGGGTTTTTTGGATTTTTAGTAAAATTTGCATT
TGGTGGAACTAAGTAAGTAGTCACTCAAAAATGTAAAAATTAGTTCCCGC
GAAAATAAGTTTCCTTAAGGCAGCTTAAGGGACACTTTCTCTTTTTAACT
AAAAACCTCTTGTCTTTAATCATTTAAAATCAATAGAGACACAAACTTCT
ATTCAGTGAGAGTAACTCTTCTGACAAACATGGTAGTTACAAAATATGAT
TTTTACTATTTATATTAGGTTAGCAACTGGACCAGATTTTGTGAAGTTAC
ATTTCCAAATGCTATTATAAAATTTATAAAAGATTTGAAATCTCAACCTT
CAACAGTAATAATTCCTGAAGAGCTGATTGCATTAGAAAAAGAATTTGCT
ATCCCGAAGAAGACTCCAAATCCAATGAAGTATTTCAAAGGCAGAAAAAA
AGATGCACTCAAAACTAAAGACTCCATAGATCTGAAAATCATTCCTTGTG
ATTCTATTGAAACTGTTTGGTATCGATGCAAGTTTGGAACAGAACAGCCA
ATAAAGATATCAAAAATGGACAGAATTATTGACTTTGAAAATATTAACTC
TAAAAAGGATATCAATTGGCCATTTCTTTCTGGCCTGAATTTGACAGTAC
TAGATCTTATAGTGTTGGCTGGTTTTCTTGAGCTCTTTGCAGAGGTAAGT
CAATTTCTGAAAAATACTCGAAAAATTTGTTTGCATGCTTTGTCAAAAAT
TTGCAAGTGTTTCAATAATGCTCAATTTCAAGAAGGAGCTTAACATTTTC
AGAACGTTTATTCAAAAGTATCTGAGGATTTCAAGTTTTTCTTGCAATAA
AATGCTTTATCAAAAAGACTTCAGGCTACTTCCCTAAATGAGAGCATGAA
TATAAATCAGCTTTAAAAGTTGATTGACATGGCTTCAAATTGATTTGTTA
AACAATTCACCACCTAGAAATCCGTAACTAAAATGTGCTGAATTCAATGT
TTTCAACCATAATTTTTAATTCTTTTCCAGGTTTGTTCTTTGAAGTTGAT
GAAAAAGCTGCTTGAGAAGCTTCCCTGTATAGAAAAATGGATTCTAAATT
CTTTTTCTTGTGAAGAGCTGTTCCCTCCCATCATTCAAATTTGGTCTAAC
CATTTGGATCAAAATGTTGGCAATACTGAAATCATTATGCCAACAAATGA
AGAAGAGATCAAACATGGTATTTGCCTTTTATTTTTTTTGAAAAAACAAA
TTCAAGTTCAACTAACACTTTGTCTATAAAACTATTCACTTGAATTTTCA
CTAAATGAGATGACAGATGACACAATCTTTGTGGCCATTTTTTTGGGTTA
TTTCAGACCTACTGGTATATACCATTTTTATATTTTTGTAACCTTTCATT
TCAAATTTTCTTTTAGTCTCTTTCACTGAAAAAAGTGGTAATCCAAAGCA
AGTCCATGCCAAAATCACCAAGGCCCTACCAACAATAAAAAATATACTCG
AGCAACATCGCTTGAATTCAATTGGATTTGGAGAAAATAATGAAAATAAA
ACAATATCTTGGGAAGATTTTCCAAATGAAGTAGACCCTAGTGGAGGTAA
TGCAAAGAAACTTTTACAAATTGGATTTTGGTTATTATGAATTCTTTATA
TTTGTTTTATATTACAAGCTATATAAATTAATGCCAGTTGGGATTTGCCA
TCAGCTACACATGCTGTTGCAAAAAAGACTTTTGAGGGTTCAAAAGAAAT
AAATTACTAATAGGAGCTGCTACATGTTTATACTTTGATAATATCTTTTT
AGGAGAGCTCAATCCAGACAGAAGTAAAAGGAAACGTCAACAGATTGAAA
ATATGGTTTCAAGAATTTTGCCATTGTTGAGGACAGGAGATAAGATTGTT
GAGTTTTGTGCAGGAGGGGGACACCTAGGAATAGTTGTTGCTTATCTACG
ACCAGACTGCCAGGTAAGTCACTACTTATACTACTGCACTTCGAAGAACT
TTTCATATTCACTTATCCAATTAATATTAGATTAAAAGTGTTCAACCAAT
ACACCTTTTCGACCGTAGCCGCCAATCGCCGCGCGGGCATTTTTTACCAC
CCTAAAACCGTCCCAGTCTTTTTCGCACCTAAAGACAATATAGAAAAAAG
TTTAACAAAAGGATTAGATCGAGTTTAGGGTTGTAAATTAAATAATAAAG
TGATACGCGCCTGACTGCCCGACTACAATCGAAAATGTGTATAGGATCTT
TATTCCATTTCAGTGAAGACTGTAAACAGTAAAGTGCAAGTATTCATGAT
AACTTTAATCTTCATCTTCAGGTCGTTTTACTTGACAATAAAGAAGAATC
AATGAATCGTGCCTGCTCTCGTATCAAATCATTAGGGTTGAAGAATGTCA
CTTTCTATCTGACAAACCTGGAGTATTATAATGGGTCTTTTGACATCGGA
ACAACTTTGCATGCTTGTGGAACAGCCACTGATTTGGTGCTCAAGAAATG
TATCAATGATGGGTATGTATCACAACTATTTTGTTTTATAGCCCTGCAAT
ACAACTGTCAATCATTTTTAAGAAAACTGATTGGATGATTAATGTCACGT
GGCCGGTCAATATTTCTCCATAGTGACCAGATGAAATTGACATCATTAAA
ATGTCAATTACTTTTATTACTTTATTTTTGCAGGGCTATAATGGATTATT
AACCTCAGAAGCCTGTCTCTCTTGCAAAATATCGACCTCGTTCGCTCGTA
TTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034907XLOC_034907Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055480-exon-scaffold_253-1575043694:246085..246354TCONS_00055480-exon-scaffold_253-1575043694:246085..246354Clytia hemisphaericaexon
TCONS_00055480-exon-scaffold_253-1575043694:245546..245581TCONS_00055480-exon-scaffold_253-1575043694:245546..245581Clytia hemisphaericaexon
TCONS_00055480-exon-scaffold_253-1575043694:244661..245086TCONS_00055480-exon-scaffold_253-1575043694:244661..245086Clytia hemisphaericaexon
TCONS_00055480-exon-scaffold_253-1575043694:244138..244324TCONS_00055480-exon-scaffold_253-1575043694:244138..244324Clytia hemisphaericaexon
TCONS_00055480-exon-scaffold_253-1575043694:243759..243938TCONS_00055480-exon-scaffold_253-1575043694:243759..243938Clytia hemisphaericaexon
TCONS_00055480-exon-scaffold_253-1575043694:243392..243552TCONS_00055480-exon-scaffold_253-1575043694:243392..243552Clytia hemisphaericaexon
TCONS_00055480-exon-scaffold_253-1575043694:242600..243033TCONS_00055480-exon-scaffold_253-1575043694:242600..243033Clytia hemisphaericaexon
TCONS_00055480-exon-scaffold_253-1510915933:246085..246354TCONS_00055480-exon-scaffold_253-1510915933:246085..246354Clytia hemisphaericaexon
TCONS_00055480-exon-scaffold_253-1510915933:245546..245581TCONS_00055480-exon-scaffold_253-1510915933:245546..245581Clytia hemisphaericaexon
TCONS_00055480-exon-scaffold_253-1510915933:244661..245086TCONS_00055480-exon-scaffold_253-1510915933:244661..245086Clytia hemisphaericaexon
TCONS_00055480-exon-scaffold_253-1510915933:244138..244324TCONS_00055480-exon-scaffold_253-1510915933:244138..244324Clytia hemisphaericaexon
TCONS_00055480-exon-scaffold_253-1510915933:243759..243938TCONS_00055480-exon-scaffold_253-1510915933:243759..243938Clytia hemisphaericaexon
TCONS_00055480-exon-scaffold_253-1510915933:243392..243552TCONS_00055480-exon-scaffold_253-1510915933:243392..243552Clytia hemisphaericaexon
TCONS_00055480-exon-scaffold_253-1510915933:242600..243033TCONS_00055480-exon-scaffold_253-1510915933:242600..243033Clytia hemisphaericaexon
TCONS_00055480-exon-scaffold_253-1491911889:246085..246354TCONS_00055480-exon-scaffold_253-1491911889:246085..246354Clytia hemisphaericaexon
TCONS_00055480-exon-scaffold_253-1491911889:245546..245581TCONS_00055480-exon-scaffold_253-1491911889:245546..245581Clytia hemisphaericaexon
TCONS_00055480-exon-scaffold_253-1491911889:244661..245086TCONS_00055480-exon-scaffold_253-1491911889:244661..245086Clytia hemisphaericaexon
TCONS_00055480-exon-scaffold_253-1491911889:244138..244324TCONS_00055480-exon-scaffold_253-1491911889:244138..244324Clytia hemisphaericaexon
TCONS_00055480-exon-scaffold_253-1491911889:243759..243938TCONS_00055480-exon-scaffold_253-1491911889:243759..243938Clytia hemisphaericaexon
TCONS_00055480-exon-scaffold_253-1491911889:243392..243552TCONS_00055480-exon-scaffold_253-1491911889:243392..243552Clytia hemisphaericaexon
TCONS_00055480-exon-scaffold_253-1491911889:242600..243033TCONS_00055480-exon-scaffold_253-1491911889:242600..243033Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:242600..246354 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.37335	1.82153	0.506508	0.706434	1.23161	0.784536	0.864437	0.981124	0.421307	0.249471	0.531546	0.12004	0.181162	0.421955	0.262383	0.426438	0.0854955	0.354506	0.22632	0.16427	0.575607	0.449087	1.74471	0.893884	0.31121	1.07113	0.449584	0.598988	0.855313	1.05682
Blast
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BLAST of TCONS_00055480 vs. Swiss-Prot (Human)
Match: GSTCD (Glutathione S-transferase C-terminal domain-containing protein OS=Homo sapiens GN=GSTCD PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 1.087e-36
Identity = 66/147 (44.90%), Postives = 97/147 (65.99%), Query Frame = 1 
Query: 1054 TISWEDFPNEVDPSGGELNPDRSKRKRQQIENMVSRILPLLRTGDKIVEFCAGGGHLGIVVAYLRPDCQVVLLDNKEESMNRACSRIKSLGLKNVTFYLTNLEYYNGSFDIGTTLHACGTATDLVLKKCIND--GYVSQLFCFIALQ 1488
            T+ W   P  V P  G+++ DR+ RK+QQ+ N+V  +    + GD+IV+FC+GGGH+GIV+A++ P CQV L++NKE S+ RA  R   LGL N+ F   N+EY+ G F+IG  LHACG ATD+V++ CI     +V+   C+  +Q
Sbjct:  399 TLDWNVLPAAVSPKEGKMSSDRALRKQQQLNNLVYVVTNQAKPGDRIVDFCSGGGHVGIVLAHMLPSCQVTLIENKELSLIRAKKRSDELGLSNIWFIQANMEYFTGMFNIGVALHACGVATDMVIEHCIKTRASFVTCPCCYGFIQ 545
The following BLAST results are available for this feature:
BLAST of TCONS_00055480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GSTCD1.087e-3644.90Glutathione S-transferase C-terminal domain-contai... [more]
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