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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055466 ID=TCONS_00055466|Name=TCONS_00055466|organism=Clytia hemisphaerica|type=transcript|length=1532bpRun BLAST on NCBI protein sequence of TCONS_00055466-protein >TCONS_00055466-protein ID=TCONS_00055466-protein|Name=TCONS_00055466-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp SESEDESIEEDEANMSDASGNDNESDSAENSLADDDDNEENKESGNEEQERun BLAST on NCBI transcript from alignment at scaffold_253:13060..22916- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055466 ID=TCONS_00055466|Name=TCONS_00055466|organism=Clytia hemisphaerica|type=transcript|length=9857bp|location=Sequence derived from alignment at scaffold_253:13060..22916- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:13060..22916- >TCONS_00055466 ID=TCONS_00055466|Name=TCONS_00055466|organism=Clytia hemisphaerica|type=CDS|length=19698bp|location=Sequence derived from alignment at scaffold_253:13060..22916- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055466 vs. Swiss-Prot (Human)
Match: AATF (Protein AATF OS=Homo sapiens GN=AATF PE=1 SV=1) HSP 1 Score: 246.128 bits (627), Expect = 1.738e-73 Identity = 152/377 (40.32%), Postives = 219/377 (58.09%), Query Frame = 1
Query: 307 INNFMAINQSSEKRKGEATRSQLDILDKLLESRIRLQKSMQVTNTLPQNNQMKNFLKEGGPQIQEAHREAKASLTGMLNNLLKLQEKLFKATNETKKLLSSESTXXXXXXXXXXXXXXXXXXPSDTDDEANKSEIESESDAENLTEEG--NVLNLPSKRKSNLSLDDYEEELSKRHKAFCGYRDTTILKWYDKTRLMTGKMNKGFSAFETSTLQQIKQVLSDKNRLMKRCQLKRTQYKILGKSEEEANPAEE-------------VDSHLTNYDAEIFDDSDFYHEMLKELIERKSNLTNGNEDDPIASGRRWLELQKLRTKTKRKVDTRASKGRKVRYDIHSKLVSFMAPQEIGSMSDQARNDLFSSLFGGMVNND 1392
+ F ++ S E KG A ++Q+ + D+LLE RI+LQK++ TN LPQ + F +GGP+ A + + +L +L +L+ LQE+L +T+ L+ T A EI SE D L EE +P+KRK L ++DY ++KR F YR+ T+ KW+DKT+L +GK+ KGF AFE S L QI +L DK RL++R Q KR+ Y++LGK E A P E ++HL + D EIFDD DFYH++L+ELIERK++ + N D +A GR+WL +QKLR+K +KVD +ASKGRK+R+ + SKL+SFMAP + +M+D AR +L+ SLFG + D
Sbjct: 209 VMTFSSVKVSEEVEKGRAVKNQIALWDQLLEGRIKLQKALLTTNQLPQPDVFPLFKDKGGPEFSSALKNSHKALKALLRSLVGLQEELLFQYPDTRYLVDG------------------------TKPNAGSEEISSEDD--ELVEEKKQQRRRVPAKRK--LEMEDYPSFMAKRFADFTVYRNRTLQKWHDKTKLASGKLGKGFGAFERSILTQIDHILMDKERLLRRTQTKRSVYRVLGKPEPAAQPVPESLPGEPEILPQAPANAHLKDLDEEIFDDDDFYHQLLRELIERKTSSLDPN--DQVAMGRQWLAIQKLRSKIHKKVDRKASKGRKLRFHVLSKLLSFMAPIDHTTMNDDARTELYRSLFGQLHPPD 555 The following BLAST results are available for this feature:
BLAST of TCONS_00055466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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