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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055460 ID=TCONS_00055460|Name=TCONS_00055460|organism=Clytia hemisphaerica|type=transcript|length=2832bpRun BLAST on NCBI protein sequence of TCONS_00055460-protein >TCONS_00055460-protein ID=TCONS_00055460-protein|Name=TCONS_00055460-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp RYCVSLQKPRLVQRLTKMGYSHAVTLNKDCSHAVVVSSSISSLSQVNLCRRun BLAST on NCBI transcript from alignment at scaffold_253:1249834..1269983+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055460 ID=TCONS_00055460|Name=TCONS_00055460|organism=Clytia hemisphaerica|type=transcript|length=20150bp|location=Sequence derived from alignment at scaffold_253:1249834..1269983+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:1249834..1269983+ >TCONS_00055460 ID=TCONS_00055460|Name=TCONS_00055460|organism=Clytia hemisphaerica|type=CDS|length=9126bp|location=Sequence derived from alignment at scaffold_253:1249834..1269983+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055460 vs. Swiss-Prot (Human)
Match: DPP8 (Dipeptidyl peptidase 8 OS=Homo sapiens GN=DPP8 PE=1 SV=1) HSP 1 Score: 330.102 bits (845), Expect = 1.458e-97 Identity = 169/342 (49.42%), Postives = 229/342 (66.96%), Query Frame = 1
Query: 4 YCVSLQKPRLVQRLTKMGYSHAVTLNKDCXXXXXXXXXXXXXXXXNLCRILQNPSPHLNGTG-----W---LESPREFPKGYVPPEIFSYVNSAGKQIYGMLFKPLKCVPGEKYPTLLYVYGGPGVQLVSNSQYSVRRVNLYALATLGYAVVFIDTMGSSNRGVQFEAAIQNKMGTVEIDQQIEGLRYISEQSGIIDTNKLIIHGWSYGGYLALMGLCQRPDVFKIAVAGAPVTCWELYDTAYTERYMSLPCQNKEAYRRGSVLTYSKNFPSEPNRLLIVHGLVDENVHFSHTSALISQLVKDGKPYQLQVYPTERHGIRNSAAARHYEVYVLWFIQQYLNS 1005
Y VS P V RLT GYSH+ +++ C + S+ + V+L ++ SP + T W L+S P Y PPEIFS+ ++ G +YGML+KP PG+KYPT+L++YGGP VQLV+N V+ L LA+LGY VV ID GS +RG++FE A + KMG +EID Q+EGL+Y++ + ID +++ IHGWSYGGYL+LM L QR D+F++A+AGAPVT W YDT YTERYM P QN++ Y GSV ++ FPSEPNRLL++HG +DENVHF+HTS L+S LV+ GKPY LQ+YP ERH IR + HYE+++L ++Q+ L S
Sbjct: 553 YVVSYVNPGEVTRLTDRGYSHSCCISQHCDFFISKYSNQKNPHCVSLYKL---SSPEDDPTCKTKEFWATILDSAGPLPD-YTPPEIFSFESTTGFTLYGMLYKPHDLQPGKKYPTVLFIYGGPQVQLVNNRFKGVKYFRLNTLASLGYVVVVIDNRGSCHRGLKFEGAFKYKMGQIEIDDQVEGLQYLASRYDFIDLDRVGIHGWSYGGYLSLMALMQRSDIFRVAIAGAPVTLWIFYDTGYTERYMGHPDQNEQGYYLGSVAMQAEKFPSEPNRLLLLHGFLDENVHFAHTSILLSFLVRAGKPYDLQIYPQERHSIRVPESGEHYELHLLHYLQENLGS 890 The following BLAST results are available for this feature:
BLAST of TCONS_00055460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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