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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055453 ID=TCONS_00055453|Name=TCONS_00055453|organism=Clytia hemisphaerica|type=transcript|length=5360bpRun BLAST on NCBI transcript from alignment at scaffold_253:1212118..1231867+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055453 ID=TCONS_00055453|Name=TCONS_00055453|organism=Clytia hemisphaerica|type=transcript|length=19750bp|location=Sequence derived from alignment at scaffold_253:1212118..1231867+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055453 vs. Swiss-Prot (Human)
Match: TERT (Telomerase reverse transcriptase OS=Homo sapiens GN=TERT PE=1 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 1.369e-55 Identity = 172/650 (26.46%), Postives = 300/650 (46.15%), Query Frame = 3
Query: 1233 FYSKSLLQKFSSSHILNKSEPTNKGIYNLLNSIFKSA-----NKPLKIERLPKHLLHXXXXXXXXXXXXXXXXXXXXXXXYCPL-----PKWIVGQHLRTQRSRRKVDYQQT--------ARAFTPVRQVYLWTRKVLSNVIPPLLWGSERNKKTLLKAVXXXXXXXXXXXXXXXSVMKGIKTSHFTCFEQSLQSHPKTAQYSLKKERLVQMFIQWIFSELLVPLLKACFYITETGTHRNKVFYYRKPVWSVLRRIGMKPLLGTL-FRTVSRNTVNEMLASKRCIGVHDIRFIPSQKKVRAIANLTKGHVVTPSNVNASAPTAALKRNKPSSINNELRPLHLSLCYESFFKSSLLGVGVTRPDQIFEKWLEFVNNCKSQYKCIPKLYAISLDIKRCFDTLPQDRILKLISEILK-EDSYVIKKFVKIKNSQNGCVTKKFVSLATDGFDCT----NFVSFIREQIKCGRLVGQNVVFVDKVFYRCETRDSMLSLVAKHIKCSIGNASDRYLLQNTGIAQGSILATTLNNIHYGDIENKYLVSTYQTLESFFIRWVDDYFFVTTSLQLARKFLNDMNRNMPNYGANLNLDKLSVNFKIS----GQPSTFERCQGDWFTWCGYLFNLQTMECCYNYMQYIGESIKDGMTFQYG 3098
YS ++ S +L+ P+ G L+ +IF + P ++ RLP+ + LF LL + + LL +CPL P V + Q S + + T R + QVY + R L ++PP LWGS N++ L+ F++ ++ +L+L+ + + +S A +E ++ F+ W+ S +V LL++ FY+TET +N++F+YRK VWS L+ IG++ L + R +S V + ++ + +RFIP +R I N+ +VV + + + + ++ L L YE + LLG V D I W FV ++Q P+LY + +D+ +DT+PQDR+ ++I+ I+K +++Y ++++ ++ + +G V K F S + D FV+ ++E ++ V +++ E + + + + + +Q GI QGSIL+T L ++ YGD+ENK + + +R VDD+ VT L A+ FL + R +P YG +NL K VNF + G + + F WCG L + +T+E +Y Y SI+ +TF G
Sbjct: 332 LYSSGDKEQLRPSFLLSSLRPSLTGARRLVETIFLGSRPWMPGTPRRLPRLPQRYWQMRPLFLELLGNHAQCPYGVLLKTHCPLRAAVTPAAGVCAREKPQGSVAAPEEEDTDPRRLVQLLRQHSSPWQVYGFVRACLRRLVPPGLWGSRHNERRFLRNTKKFISLGKHAKLSLQELTWKMSVRDCAWLRRSPGVGCVPAAEHRLREEILAKFLHWLMSVYVVELLRSFFYVTETTFQKNRLFFYRKSVWSKLQSIGIRQHLKRVQLRELSEAEVRQHREARPALLTSRLRFIPKPDGLRPIVNMD--YVVGARTFR--------REKRAERLTSRVKALFSVLNYERARRPGLLGASVLGLDDIHRAWRTFVLRVRAQ-DPPPELYFVKVDVTGAYDTIPQDRLTEVIASIIKPQNTYCVRRYAVVQKAAHGHVRKAFKSHVSTLTDLQPYMRQFVAHLQETSPL-----RDAVVIEQSSSLNEASSGLFDVFLRFMCHHAVRIRGKSYVQCQGIPQGSILSTLLCSLCYGDMENKLFAGIRR--DGLLLRLVDDFLLVTPHLTHAKTFLRTLVRGVPEYGCVVNLRKTVVNFPVEDEALGGTAFVQMPAHGLFPWCGLLLDTRTLEVQSDYSSYARTSIRASLTFNRG 963 The following BLAST results are available for this feature:
BLAST of TCONS_00055453 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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