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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055431 ID=TCONS_00055431|Name=TCONS_00055431|organism=Clytia hemisphaerica|type=transcript|length=5823bpRun BLAST on NCBI protein sequence of TCONS_00055431-protein >TCONS_00055431-protein ID=TCONS_00055431-protein|Name=TCONS_00055431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1091bp MQIAAQAAAIATAMHQMQSVANGPIAPEQSAQIAAQLVKMLSSSAQESTSRun BLAST on NCBI transcript from alignment at scaffold_253:838693..857331+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055431 ID=TCONS_00055431|Name=TCONS_00055431|organism=Clytia hemisphaerica|type=transcript|length=18639bp|location=Sequence derived from alignment at scaffold_253:838693..857331+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:838693..857331+ >TCONS_00055431 ID=TCONS_00055431|Name=TCONS_00055431|organism=Clytia hemisphaerica|type=CDS|length=26208bp|location=Sequence derived from alignment at scaffold_253:838693..857331+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055431 vs. Swiss-Prot (Human)
Match: PCF11 (Pre-mRNA cleavage complex 2 protein Pcf11 OS=Homo sapiens GN=PCF11 PE=1 SV=3) HSP 1 Score: 140.198 bits (352), Expect = 5.580e-33 Identity = 71/152 (46.71%), Postives = 97/152 (63.82%), Query Frame = 2
Query: 524 EYENAIQDLTFNSKPLINALTMVAEENKEYGAPIVKVICDRINKVDIGKKMPSLYLLDSILKNVGKDYIHIICNVIGETFCHVFETAADERNRMSLFKLRKTWTQYFPVKTLNEIDVRSRKTDPNWPI--LAPAIPENGENQNKIHINPKFL 973
+Y+++++DLTFNSKP IN LT++AEEN + IV +I + K +K+P +YL+DSI+KNVG++Y+ + TF VFE DE R SLFKLR TW + FP+K L +DVR DP WPI L P + N + IH+NPKFL
Sbjct: 21 DYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFE-KVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNV-----NTSSIHVNPKFL 166 HSP 2 Score: 118.627 bits (296), Expect = 2.025e-26 Identity = 83/233 (35.62%), Postives = 132/233 (56.65%), Query Frame = 1
Query: 3961 LDVNSLLGQLISTGLIGNTSNPSPTPPMVD-------------DDDLPAPEIP-LRIDELKRRQDIVVNQLFLGMQCSSCGERFPKSHRKQYSDHLDWHFRENXXXXXXXXXXMSRSWYLALSDWVEYTETKISKDGKVQSVFFESEKGEDSLHLSTRKRKNSF--VPSVPVEGDENGGMCGVCMDXXXXXXXXXXXXXXXKDAIRIKNKTYHVAC-QDYVHDEELDETVTPT 4608
+DVN L +L+ TG++ + S T + + ++D P++ ++ELK+R D V+N+L+ G+QC SCG RF S Y+DHLDWH+R+N+ EK+ +KV R WY +L+DW+E+ E ++ + +S FFE E L ++ F VP+ P E+ C +C ++ E+YWDE+ EEW K+AIR+ K YH +C +DY + D T +P+
Sbjct: 1267 VDVNELFSKLLKTGILKLSQTDSATTQVSEVTAQPPPEEEEDQNEDQDVPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEE-RAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVES---CEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPS 1495 The following BLAST results are available for this feature:
BLAST of TCONS_00055431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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