TCONS_00055431-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055431-protein
Unique NameTCONS_00055431-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1091

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055431-protein ID=TCONS_00055431-protein|Name=TCONS_00055431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1091bp
MQIAAQAAAIATAMHQMQSVANGPIAPEQSAQIAAQLVKMLSSSAQESTS
TAAVVTTTTQGVSLPSTQTTNSTSTTISTKVDTPSTINSTKQETPLDNLK
AAGSTQSENTDHSKEDPLKTEPPVKSESDQKPQDNEPKKKEIERRYRGYE
NRYKDIERAKRDPENSNLKMKVDLKISNTLEDSTSTENIKLNISPKKIPK
IKETVKSTSPKGKGKEKELKDVTENDNFKIKSPPITKTDSKTKIDNEKQG
AVKKSDSKNASSSVERQGRPKSREGNSKDSSVEKTTRIGNKDKDRKQSDP
KIEPPSKKTKETPAESTERSRKSRARSPSRYYCQLEKKTDTEKIVEEKEK
ALTLQRKRKDSENEEILDNKAKEQKKVYESYIAHIETLESNSEKPNNKIS
VGTLESVFRQFDTKYKKRMMSSDHYKALADRVDKLASRIAGKEIKIGKRL
KYEETYSPNKKRFLNNQNPEMQFRRRLPFDRPFGPDGPYPPPGMMRGPPP
PHWRGLPPPHWRGPIPSFGGPPPHFMDGPRPPHFMDGPPPHQMGMHPPPQ
MQEGMPPPQPMDHDGNMPPPHQFMDGPRPPHWDGPPMDQWRNSPPLHMMM
EGGPPPEHWQEMPPPHMMDGPPPNMNEGPPPNMMEGPPPNIMQPPPNGMA
PLHRDSPIPHQMEAPQPPGPPPQAPALDVNSLLGQLISTGLIGNTSNPSP
TPPMVDDDDLPAPEIPLRIDELKRRQDIVVNQLFLGMQCSSCGERFPKSH
RKQYSDHLDWHFRENKKEKEGVKKVMSRSWYLALSDWVEYTETKISKDGK
VQSVFFESEKGEDSLHLSTRKRKNSFVPSVPVEGDENGGMCGVCMDRLEE
YWDEDLEEWRYKDAIRIKNKTYHVACQDYVHDEELDETVTPTIATPNVEK
SFSLTDSTPLDDLEGIFPPGTETDIAPPGTEPTPPKAKTISKLSPQKSDV
KPIEEKEDPLPSDIKPSATLPIIEPAPTETEIEPPPPGTENDIVGPTIPD
IAELESAPPGTENEEPEPLPPGTEDEQETMEIDSINENVTKIDNCEEKRT
NVLDNNVEMKDSAKIENDEYIDLPADSPEYPLIAPTTERNL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034882XLOC_034882Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055431TCONS_00055431Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021605CFIA_Pcf11
Vocabulary: Biological Process
TermDefinition
GO:0006369termination of RNA polymerase II transcription
GO:0006379mRNA cleavage
GO:0006378mRNA polyadenylation
Vocabulary: Cellular Component
TermDefinition
GO:0005849mRNA cleavage factor complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006379 mRNA cleavage
biological_process GO:0006378 mRNA polyadenylation
biological_process GO:0006369 termination of RNA polymerase II transcription
cellular_component GO:0005849 mRNA cleavage factor complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 344..365
NoneNo IPR availableCOILSCoilCoilcoord: 139..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 614..635
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 647..675
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 919..1028
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..339
IPR021605Subunit of cleavage factor IA Pcf11PFAMPF11526CFIA_Pcf11coord: 765..797
e-value: 1.8E-4
score: 21.8

Blast
[Close]
BLAST of TCONS_00055431-protein vs. Swiss-Prot (Human)
Match: PCF11 (Pre-mRNA cleavage complex 2 protein Pcf11 OS=Homo sapiens GN=PCF11 PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 7.495e-38
Identity = 83/233 (35.62%), Postives = 132/233 (56.65%), Query Frame = 0 
Query:  677 LDVNSLLGQLISTGLIGNTSNPSPTPPMVD-------------DDDLPAPEIP-LRIDELKRRQDIVVNQLFLGMQCSSCGERFPKSHRKQYSDHLDWHFRENKKEKEGVKKVMSRSWYLALSDWVEYTETKISKDGKVQSVFFESEKGEDSLHLSTRKRKNSF--VPSVPVEGDENGGMCGVCMDRLEEYWDEDLEEWRYKDAIRIKNKTYHVAC-QDYVHDEELDETVTPT 892
            +DVN L  +L+ TG++  +   S T  + +             ++D   P++    ++ELK+R D V+N+L+ G+QC SCG RF  S    Y+DHLDWH+R+N+ EK+  +KV  R WY +L+DW+E+ E    ++ + +S FFE    E  L      ++  F  VP+ P    E+   C +C ++ E+YWDE+ EEW  K+AIR+  K YH +C +DY +    D T +P+
Sbjct: 1267 VDVNELFSKLLKTGILKLSQTDSATTQVSEVTAQPPPEEEEDQNEDQDVPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEE-RAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVES---CEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPS 1495
The following BLAST results are available for this feature:
BLAST of TCONS_00055431-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCF117.495e-3835.62Pre-mRNA cleavage complex 2 protein Pcf11 OS=Homo ... [more]
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