TCONS_00055416 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055416
Unique NameTCONS_00055416
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055416 ID=TCONS_00055416|Name=TCONS_00055416|organism=Clytia hemisphaerica|type=transcript|length=2634bp
ATTCTATGATGGCTGTGTCATTGTGGAGTTACGTGATTACAGAAGAAGTA
CTCAGAAAAACTTTGATACCACCTACATTTTATTAAAACCAACCTCACAG
ACCATTGTTCGTGATGTAAACTCATTGATGTCAGACCCGAAATGGAGTAA
CGAAGACAAGGCCAAACTAGAATCTCAATTAGTTTTAGCTATGCAACCAA
GACTGTGTTTAGATCCTTCACCAAAGGTTCTTTACACTGCCAACAAAATA
CAACACCATGCCAATAAATGGAATCATAAAGGTTTACGAAGGTCAATGAA
AAGATTTTCACAGCCCTACTTGAACCGTGCATATTTATGTTCTCACACAC
CTTCGCCACCATGTTTGAAGCTGTTAGATTTcatcaaacaaaacaaagat
aaacGTTCCAGTAATTCTTTCCATAAATTGAGTAGAGCCACCCAACATAC
TGACATGTGGAAACAAAGACAACTCAACCTATCTGTGCCATCGAAAATAG
ACGTAACCTCACATGCAAAACTGATGGAACTACCGAAATACACAACAGAT
TATACGCCAGAGAAAATCCAAGAAATTATTTTGGAAGGCGAAAAGACCAA
CAACCGTTCTTATTATTGTCGTGTTACCATCCAAAGACGTGGCTCAACAG
GCGAATATATTGGCGATCTCTACCTAGAGGAAGACCATGGGAAAACGAAG
GAAGATACGAAGAAAGATGGGCGTGCATGCAGGTTTTCTCTGGTCAACCG
AATCACAGCGCAACGCTATTTACAACAGTTTCAAGAACTCTACACAGAAG
AAGGTCGGAAATCAgtcaaaatttcaacctttgTCGCAAACCAAGCACAA
cgaaatcaacaacaacaacagcaacaagcACAAAACAGTAACAACGCCTC
ACAACAAGCCAAAACACAAgcacaacaacagcaacaacagaCTGCTCAGA
TCTTACAACAAGCTGCACACCAGGCTGCGACACAAAAGATCATTGTTTCG
TCAGTTCCGACATCCACGACACAAATGACAACCCATACCATCGTCAATCA
GAATCGCACGTTCACTGTGGCTCAGAACCCAGTCATTTCACATGGTGGAA
ATACATACATTCTTGCAAGCTCGGCACTTCAACAATCACTTAACTTGGGA
TCCAATGTTGTACCAATGTCGTTATCAAGGAATCCTTACATAGTAAATTC
ATCAGGAAACCTTCAACAAGCTGTATCAACCAAAACCAACCAATCGCCAA
GCAAAATTATTGGAGCGTCTAATGAAAATGCACAGCTAACAACAGCTTAC
ATCCAATCTGTATCGGGTGCAACGATAGGAGGAACTTCACATGGTCAACT
AACGGCAGTTCCTATCGCAGTACAAGGAAACAATGTCAGTTTGGTCCCTG
GTAATCAGTTCATAGCAGCCAAAGCATCTCCACAAACAATACGTCCAGCA
GGTGCCACTGGGCAAATCATGCTGCAGGTACCAGGCAATCTTGTACCACT
CTCTCAAATGACCAGAGTAGCTGGTGGACCACAAAAGGGACAAATTCCTG
GTGCTGGCATGGCTTCAGTTATGGTCCACGGGAAGCAAGTCATGGTTCAG
GGAGGCGCCATGATACAGGGCCAAGCTACCTTCATACCTAACCAAGCACC
ATTGATCCCAGGTCTTCAAGGTGGTCAGACAGCCATCATTCAAGGTGGTT
CCATCTTCGTGCAAGGTCAACCAGGACAAACACAAGGACAAACTGTCATG
ATACAGGGACAGCCAGGACAACATCAAACTGGTCAGAATACTTTGATCCA
AGGACAAGCACTGCAAGGTCAACCTGTATTCATCCAAGGTCAACCGAATG
GCCAAACGCAGGTTGTTCAAGGTCAAGCAATCATGTTGCAGGGCAATCAA
GGTGGACACCAGGGCCAAGTTCAATTGATCACAACTTCAACATCAAGCGG
CGGCCAACAACTTCAAATCGTCCCTCAAATACAAAAACAAGCAGTAATTA
CAAGTTCAGCTGGACGCACGCAATCATCTACCGCTCTCTCTGCTTTAACA
TCACAAGTTAACTTGATCCCTATGCAACAGAGTGGACAACAATATCAACC
CATCGTTCAATTCACTACTTCCGCCCAACCCCGCCCTGTTCAACAGAGGC
GTAAAAGTGCTTCTCAACCCAACGCAGCGGGTGGTGGGCGGAAGCGTGCC
CCTGCACCTACTAAACCTTCTCCCCAATCACAGTAAAACACCCCAAACCT
TTTTCCATTTCACATCTGTATGATTCTCTTACCTTTAATTCCGCCTAATT
GATCTAGAAGTGTTCTGTTCTGAATGAACTACTTTTGATATATCATCAAT
GGCAAAATGTCACTTTACTAGTCTTCTTGGATTTAcgaagttttcaattt
ttaagtgCGGCATACATAGTCATAATAATGATTTCAttgtgaaaacattt
tttctgttgcaGGTGTTGTATAGTTTAAGTTACAATCTCTTTTGTATATC
ACCAAATCTCTTCTGCTATAAACTACTTATTATTATGGACTGTATATACT
TTTTTTAACTACTTTTGACACAAAATTGACAACACATTTAAATGTTTCTT
TAATAATCTTAggatattcaaaaatttttagaac
Run BLAST on NCBI

transcript from alignment at scaffold_253:684854..694328+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055416 ID=TCONS_00055416|Name=TCONS_00055416|organism=Clytia hemisphaerica|type=transcript|length=9475bp|location=Sequence derived from alignment at scaffold_253:684854..694328+ (Clytia hemisphaerica)
ATTCTATGATGGCTGTGTCATTGTGGAGTTACGTGATTACAGAAGAAGTA
CTCAGAAAAACTTTGATACCACCTACATTTTATTAAAACCAACCTCACAG
GTAAGCAGTATTTTGTTTAAAGTTGTATTTATTTCTCTTCAGGAACAAAC
TCCTTTTAATACACATTTGTTCTCTTACTTGGttgtagattttattttca
ttgaagCATTTTCCAACTGATTTTGGTCATAAGAGTACTGTACTATGTTT
AGTGTAAACTACCTATATCTAATATATTTGTCTCTCTGAAATCTTTGTAG
ACCATTGTTCGTGATGTAAACTCATTGATGTCAGACCCGAAATGGAGTAA
CGAAGACAAGGCCAAACTAGAATCTCAATTAGTTTTAGCTATGCAACCAA
GACTGTGTTTAGATCCTTCACCAAAGGTTCTTTACACTGCCAACAAAATA
CAACACCATGCCAATAAATGGAATCATAAAGGTTTACGAAGGTAAACACC
AATGGATTCAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAATGACAA
ACCCAATGTCACTACCAATAAATAAATCTTACCTGATTAAACATGAACCT
AATCAATGTTTTAACACTATTCAGCTAGCATATTATCCAGTATTATCCAA
AGCCCATTCTATTTTAGGTCAATGAAAAGATTTTCACAGCCCTACTTGAA
CCGTGCATATTTATGTTCTCACACACCTTCGCCACCATGTTTGAAGCTGT
TAGATTTCATCAAACAAAACAAANgaaaaatataaaaatacttcTGGTTT
TGAAATCATCATGTCAATCATTGATTTGTTTCCTGATTATTATTTACCTT
TATAGGAAAGTGAATTCTTAGATTANTTAAAGTTTATAAGAATGAAAGTG
CACTTTTTccaatctttttgaaatatgataaacAATAGATATTACATTGA
ACAACTACTGAAATTCAGTATGAAATAATATTGAaacacttttatttttc
cttaaGGATTTCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGA
AGACGACCTTGGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGAT
ATTCACTGatgttgaaaaagaaagatgGAAGTGATGTGGAGACGTATAAA
CTCCCCTATGAGGTAATTTGTATTAGGTAATTACATAGTCTTTAAGGGGT
AGAACATTATGACATATCTGTAAAATCCTAATTTAGTGAGGTTTTGCTAA
ATATGAGAGGATACTTAGATCCATGTGACATTATTTTGCTAATGAAATTA
CTTGAAACTGAAGAGGATAAAGCCTGAGTCATTATTATTGTTTACATTGA
AATgagtgaaaaatataaaaatacttcTGGTTTTGAAATCATCATGTCAA
TCATTGATTTGTTTCCTGATTATTATTTACCTTTATAGGAAAGTGAATTC
TTAGATTACTTGGATACACAAGAACTACCTCCTCTCCTTGTGGATGTTTT
GGAGAGTGCTCAGGTTTGTAGGTCCATCACAACAACATACTTAACGAAGT
TGGAATCGTACATAATGTCAGCTTTGTCAAGCAGAATCCTCTCAAATTTT
AGATGATCgtgctattcatgatattataccaccctaaATATTTTCCCAAA
CAAAGGGTATTGGTTTTCAAATattagaagctgaaaacccacttttCTTG
GTATTTTGTACCTTCCCTACAATTTCATGCACCTCGCTTTTAAAGAATAA
GCTCTAGtctagacggccgactttctgtcctgcctattctaattgttagt
gTAGGCAGAAAGCGTAcacaaagttggcagttaaaatctttgcttggaaa
agattgaaagaagtcattgcgttgacgtcaaaaaagggcaatgcattgac
tttagacagcccactttattaagcccactttaattcacaattagaatagg
cagggcgaaaagtgggccgtctaaactagagctaacaTCCACCTGTTTGt
tattcttttgaaaagaattagAAATTAGAAATGTTAAAGAGACTGAAATC
CTATCACCAAATTTTGCTTTTCAACTGCCTTCAGAACTCtcattttttca
ttgtttattactttttgataaGATTTTATACTACAGAAAATTAAATATAT
TCCTATGTAACGATCGATGTTAAGAAATTCTTTGTTTTCCATGAATAGGT
TGATCTATTCTATGATGGTTGTGTCATTGTGGAGTTACGTGATTACAGAC
GAAGTACTCAGAAAAACTTTGATACCACTTACATTTTATTAAAACCAACC
TCACAGGTAAGCAGTGTTGTGTTTATTTCTCTTCAGGAACAAACTCCTTT
TAATACACATTTGTTCTCTTACTTGGttgtagattttattttcattgaag
CATTTTCCAACTGATTTTGGTCATAAGAGTACTGTACTATGTTTAGTGTA
AACTACCTATATCTAATATATTTGTCTCTCTGAAATCTTTGTAGACCATT
GTTCGTGATGTAAACTCATTGATGTCAGACCCGAAATGGAGTAACGAAGA
CAAGGCCAAACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTGT
GTTTAGATCCTTCACCAAAGGTTCTTTACACTGCCAACAAAATACAACAC
CATGCCAATAAATGGAATCATAAAGGTTTACGAAGGTAAACACCAATGGA
TTCAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAATGACAAACCCAA
TGTCACTACCAATAAATAAATCTTACCTGATTAAACATGAACCTAATCAA
TGTTTTAACACTATTCAGCTAGCATATTATCCAGTATTATCCAAAGCCCA
TTCTATTTTAGGTCAATGAAAAGATTTTCACAGCCCTACTTGAACCGTGC
ATATTTATGTTCTCACACACCTTCGCCACCATGTTTGAAGCTGTTAGATT
TcatcaaacaaaacaaagataaacGTTCCAGTAATTCTTTCCATAAATTG
AGTAGAGCCACCCAACATACTGACATGTGGAAACAAAGACAACTCAACCT
ATCTGTGCCATCGAAAATAGACGTTAGTTATTCTTTTTTATACATTCTAA
CTTCACTATACCATACACCtcctcacagacccactgggactccttcccac
tggaaaaattggcctaaATATCGTCcctagtggaaaattatacactTAAT
TTGTATCCCAACTAAAAATAATCCAATGAACTAATCCCCACTACTTATAT
CATGCTATTTTCTatcctcactgaattttctgacttaaaaacaatggaat
ttaaatccaCAGTCATAAAAGTATAGGAATATCGATCCCCAACgaatttc
agtccgttatttttacccccactggctgaaaaaatcccacccccttctca
cacacccgagaagggggtgtatcatttAATACCGATTCTTCATATCTCAC
GGCTTAAAGAGCTCAAAGTATGAACTAATCATGAACTAACAGTGACTCCT
TGCANGGATTCAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAATGAC
AAACCCAATGTCACTACCAATAAATAAATCTTACCTGATTAAACATGAAC
CTAATCAATGTTTTAACACTATTCAGCTAGCATATTATCCAGTATTATCC
AAAGCCCATTCTATTTTAGGTCAATGAAAAGATTTTCACAGCCCTACTTG
AACCGTGCATATTTATGTTCTCACACACCTTCGCCACCATGTTTGAAGCT
GTTAGATTTcatcaaacaaaacaaagataaacGTTCCAGTAATTCTTTCC
ATAAATTGAGTAGAGCCACCCAACATACTGACATGTGGAAACAAAGACAA
CTCAACCTATCTGTGCCATCGAAAATAGACGTTAGTTATTCTTTTTTATA
CATTCTAACTTCACTATACCATACACCtcctcacagacccactgggactc
cttcccactggaaaaattggcctaaATATCGTCcctagtggaaaattata
cactTAATTTGTATCCCAACTAAAAATAATCCAATGAACTAATCCCCACT
ACTTATATCATGCTATTTTCTatcctcactgaattttctgacttaaaaac
aatggaatttaaatccaCAGTCATAAAAGTATAGGAATATCGATCCCCAA
Cgaatttcagtccgttatttttacccccactggctgaaaaaatcccaccg
ggtgtgtgagaagggggtgtatcatttAATACCGATTCTTCATATCTCAC
GGCTTAAAGAGCTCAAAGTATGAACTAATCGTGAACTAACAATGACTCCT
TGCAAACAGTATTTGTCTATCATCGTTAAAAGTTTCGATGGTGGTCGAAA
GGAATAAGTTAtttgatatttcaattttagtttaaaCCACGACTCTCATT
TTACAAACTCTTTTAGGTAACCTCACATGCAAAACTGATGGAACTACCGA
AATACACAACAGATTATACGCCAGAGAAAATCCAAGAAATTATTTTGGAA
GGCGAAAAGACCAACAACCGTTCTTATTATTGTCGTGTTACCATCCAAAG
ACGTGGCTCAACAGGCGAATATATTGGCGATCTCTACCTAGAGGAAGACC
ATGGGAAAACGAAGGAAGATACGAAGAAAGATGGGCGTGCATGCAGGTTT
GTCTTTTTTGTTAATTACCTTAGAGAGACTTGGACGGTGTTTAGAAAACA
CCCATGAGGACAGATAGTCTAGAATATGTCAACTCAAATGCTGTCTTGAC
TTCAAAAGTTATGGAAACCTTTAGGATCGTTATTTGACCTGACAGATTTG
TTTTATTTGTAGAATTTTTCCTGGTACCTTAGGTTATGGAGTTCAATTCT
ATAGTTAGATCTATTTATCAAGCTTTGTATCATTtggtttttatcatttt
attttacattcTTTTCGAAAGGTTTTCTCTGGTCAACCGAATCACAGCGC
AACGCTATTTACAACAGTTTCAAGAACTCTACACAGAAGAAGGTCGGAAA
TCAgtcaaaatttcaacctttgTCGCAAACCAAGCACAAcgaaatcaaca
acaacaacagcaacaagcACAAAACAGTAACAACGCCTCACAACAAGCCA
AAACACAAgcacaacaacagcaacaacagaCTGCTCAGATCTTACAACAA
GCTGCACACCAGGCTGCGACACAAAAGATCATTGTTTCGTCAGTTCCGAC
ATCCACGACACAAATGACAACCCATACCATCGTCAATCAGAATCGCACGT
TCACTGTGGCTCAGAACCCAGTCATTTCACATGGTGGAAATACATACATT
CTTGCAAGCTCGGCACTTCAACAATCACTTAACTTGGGATCCAATGTTGT
ACCAATGTCGTTATCAAGTTCGTTTTTTGAGTTTTACTTAATATCTTTCT
TGTGTCTCTACTAAGATTTTCTCATCTAAgattttctctatttttcgCTT
CTAGAATAGTTCCTCTGTTCCACATCCAAAATCTTATACAACATAACCAG
TAAACTCTCTTTTTTCTCTCTACATGAGTTTACATAACTCAAACGCCAAG
TAAGGACAACCCAGTAACTCTTCGAGTTGCAGAGTAAAAAATCAATACCT
TAAGGGGTCAGAAAGAATGTTTCGACTACATTGAAATAATGTGCGAGTTA
TGAAGAGATGCTTTAACATTCAATTTAATTATTCAATCTTCTAGGGAATC
CTTACATAGTAAATTCATCAGGAAACCTTCAACAAGCTGTATCAACCAAA
ACCAACCAATCGCCAAGCAAAATTATTGGAGCGTCTAATGAAAATGCACA
GCTAACAACAGCTTACATCCAAGTAACTTCTCATAAATTGATTCTTCCTT
TTTTAATTCCAATTATCACCCAAGGGTGTTTAATTTTGAGCACCATCTAG
ATTACTTCTGATTGACACGACCATTCTCAAACCGCTCAACTCGTAATACA
AATGCTTGTTCAGTTAGCACTAATCATTTTCATACAACGATAAATATTGT
TTTGCTTCAGTCTGTATCGGGTGCAACGATAGGAGGAACTTCACATGGTC
AACTAACGGCAGTTCCTATCGCAGTACAAGGAAACAATGTCAGTTTGGTC
CCTGGTAATCAGTTCATAGCAGCCAAAGCATCTCCACAAACAATACGTCC
AGCAGGTGCCACTGGGCAAATCATGCTGCAGGTACATgatcaaatctttt
ttgttggaataataatattttgcaaaaagtATCAAGTTATTGACTCTAGT
TGGTCTAAGTTGTCTTTGCTCCAACTAATTTTATTTGGCATTTCTTTAAT
AGTGTGAATTGAGCTCTGGTTCTGGTTTTCCTGGATATTAAATTGTATGT
CATCCAATACcttacttatttttcaaagtattgtaattttaaagcttaaa
agtatttgttgtttttgtaaacTTTCCAGGTACCAGGCAATCTTGTACCA
CTCTCTCAAATGACCAGAGTAGCTGGTGGACCACAAAAGGGACAAATTCC
TGGTGCTGGCATGGCTTCGGTTATGGTCCACGGGAAGCAAGTCATGGTTC
AGGGAGGCGCCATGATACAGGGCCAAGCTACCTTCATACCTAACCAAGCA
CCATTGATCCCAGGTCTTCAAGGTGGTCAGACAGCCATCATTCAAGGTGG
TTCCATCTTCGTGCAAGGTCAACCAGGACAAACACAAGGACAAACTGTCA
TGATACAGGGACAGCCAGGTAACTTCTTGACCTTTCTGTGCTCCTTTTTA
TTCAGATAAAtcgtaatttgaaatttgaaaactcTGTGATAAAATGGGAT
TTCTAGCATTACTTATTGAAATTATTTGATAAGCATAAGCAGTTACCATC
TCTTCCTCGGCATATTTTTTTCTCGTTGTTCATTTCAATATCCAACCCGT
AGTAACTCGTTTCGAGCTGTATAATTTTGTTTGACTTAGGACAACATCAA
ACTGGTCAGAATACTTTGATCCAAGGACAGGCACTGCAAGGTCAACCTGT
ATTCATCCAAGGTCAACCGAANGACCATTCTAAAACCGCTCAACTCGTAA
TACAAATGCTTGTTCAGTTAGCACTAATCATTTTCATACAACGATAAATA
TTGTTTTGCTTCAGTCTGTATCGGGTGCAACGATAGGAGGAACTTCACAT
GGTCAACTAACGGCAGTTCCTATCGCAGTACAAGGAAACAATGTCAGTTT
GGTCCCTGGTAATCAGTTCATAGCAGCCAAAGCATCTCCACAAACAATAC
GTCCAGCAGGTGCCACTGGGCAAATCATGCTGCAGGTACatcatcaaatc
ttttttgttggaataacaatattttgcaaaatgtaTCAAGTTATTGACTC
TAGTTGGTCTAAGTTGTCTTTGTTCCAACTGATTTTATTTGGCATTTCTT
TAATACTGTGAATTGGGCTCTGGTTCTGGTTTTCCTGGATATTAAATTGT
ATGTCATCCAATACcttacttatttttcaaagtattgtaattttaaagct
taaagctatttgttgtttttgtaaacTTTTCCAGGTACCAGGCAATCTTG
TACCACTCTCTCAAATGACCAGAGTAGCTGGTGGACCACAAAAGGGACAA
ATTCCTGGTGCTGGCATGGCTTCAGTTATGGTCCACGGGAAGCAAGTCAT
GGTTCAGGGAGGCGCCATGATACAGGGCCAAGCTACCTTCATACCTAACC
AAGCACCATTGATCCCAGGTCTTCAAGGTGGTCAGACAGCCATCATTCAA
GGTGGTTCCATCTTCGTGCAAGGTCAACCAGGACAAACACAAGGACAAAC
TGTCATGATACAGGGACAGCCAGGTAACTTCTTGACCTTTCTGTGCTCCT
TTTTATTCAGATAAatcgtaatttttgaaatttgaaaactcTGTGATAAA
ATGGGATTTCTAGCATTACTTATTGAAATTATTTGATAAGCATAAGCAGT
TACCAACTCTTCCTCGGCATATTTTTTTCTCGTTGTTCCAACCCGTAGTA
ACTCGTTTCGAGCTGTATAATTTTGTTTGACTTAGGACAACATCAAACTG
GTCAGAATACTTTGATCCAAGGACAAGCACTGCAAGGTCAACCTGTATTC
ATCCAAGGTCAACCGAATGGCCAAACGCAGGTAAGCTATTCAACATTTAA
ATAACAGTTGACAGTTTCAAATGATTAATATGGTGAAAATATTAGTAGCT
ATTTAGTACTCTACTTTTTAATGTATTTTATAAATattatttgctttttc
tcataagGTACACCATAATATACACTGGTAGCGTTTTTCCAATTTATTAC
CAACGAATTTCTTTTACTGTACACTTGTATGATAAAAAAGGCGTCGAGTA
AGATATATACTTCGGTAATGTCAAGACGAAGCTTCATTGCATATTGTTTG
TGATTGTAGTTCATGACGAAATTATAGCCATTGTCGGAGTTCAATCACTA
TTCAAAGTATTTTTCACCCTTTCTTCTTCCTCTACAGGTTGTTCAAGGTC
AAGCAATCATGTTGCAGGGCAATCAAGGTGGACACCAGGGCCAAGTTCAA
TTGATCACAACTTCAACATCAAGCGGCGGCCAACAACTTCAAATCGTCCC
TCAAATACAAAAACAAGGTATAACTCGCCCATTTTCATCTTTCTATAATA
ATAGTACCGGAGCTTtttgtatttgtatttttttgtaatgaaactttatc
aaatgcaaacttaaaatttacttttaagATTTACAATATTAGACCCTGTT
AGATTTTTTGCCCACGTCTGAAAGATCGTTGTAAAAGACCTTACAAAAAC
ACTTATTATTCTTGATATTATTCTTATTTCAGCAGTAATTACAAGTTCAG
CTGGACGCACGCAATCATCTACCGCTCTCTCTGCTTTAACATCACAAGTT
AACTTGATCCCTATGCAACAGAGTGGACAACAATATCAACCCATCGTTCA
ATTCACTACTTCCGCCCAACCCCGCCCTGTTCAACAGAGGCGTAAAAGTG
CTTCTCAACCCAACGCAGCGGGTGGTGGGCGGAAGCGTGCCCCTGCACCT
ACTAAACCTTCTCCCCAATCACAGTAAAACACCCCAAACCTTTTTCCATT
TCACATCTGTATGATTCTCTTACCTTTAATTCCGCCTAATTGATCTAGAA
GTGTTCTGTTCTGAATGAACTACTTTTGATATATCATCAATGGCAAAATG
TCACTTTACTAGTCTTCTTGGATTTAcgaagttttcaatttttaagtgCG
GCATACATAGTCATAATAATGATTTCAttgtgaaaacattttttctgttg
caGGTGTTGTATAGTTTAAGTTACAATCTCTTTTGTATATCACCAAATCT
CTTCTGCTATAAACTACTTATTATTATGGACTGTATATACTTTTTTTAAC
TACTTTTGACACAAAATTGACAACACATTTAAATGTTTCTTTAATAATCT
TAggatattcaaaaatttttagaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034875XLOC_034875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055416-exon-scaffold_253-1491911889:684854..684953TCONS_00055416-exon-scaffold_253-1491911889:684854..684953Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1510915933:684854..684953TCONS_00055416-exon-scaffold_253-1510915933:684854..684953Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1575043694:684854..684953TCONS_00055416-exon-scaffold_253-1575043694:684854..684953Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1491911889:687348..687538TCONS_00055416-exon-scaffold_253-1491911889:687348..687538Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1510915933:687348..687538TCONS_00055416-exon-scaffold_253-1510915933:687348..687538Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1575043694:687348..687538TCONS_00055416-exon-scaffold_253-1575043694:687348..687538Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1491911889:687715..687925TCONS_00055416-exon-scaffold_253-1491911889:687715..687925Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1510915933:687715..687925TCONS_00055416-exon-scaffold_253-1510915933:687715..687925Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1575043694:687715..687925TCONS_00055416-exon-scaffold_253-1575043694:687715..687925Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1491911889:689270..689499TCONS_00055416-exon-scaffold_253-1491911889:689270..689499Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1510915933:689270..689499TCONS_00055416-exon-scaffold_253-1510915933:689270..689499Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1575043694:689270..689499TCONS_00055416-exon-scaffold_253-1575043694:689270..689499Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1491911889:689775..690220TCONS_00055416-exon-scaffold_253-1491911889:689775..690220Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1510915933:689775..690220TCONS_00055416-exon-scaffold_253-1510915933:689775..690220Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1575043694:689775..690220TCONS_00055416-exon-scaffold_253-1575043694:689775..690220Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1491911889:690548..690675TCONS_00055416-exon-scaffold_253-1491911889:690548..690675Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1510915933:690548..690675TCONS_00055416-exon-scaffold_253-1510915933:690548..690675Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1575043694:690548..690675TCONS_00055416-exon-scaffold_253-1575043694:690548..690675Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1491911889:691968..692138TCONS_00055416-exon-scaffold_253-1491911889:691968..692138Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1510915933:691968..692138TCONS_00055416-exon-scaffold_253-1510915933:691968..692138Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1575043694:691968..692138TCONS_00055416-exon-scaffold_253-1575043694:691968..692138Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1491911889:692388..692676TCONS_00055416-exon-scaffold_253-1491911889:692388..692676Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1510915933:692388..692676TCONS_00055416-exon-scaffold_253-1510915933:692388..692676Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1575043694:692388..692676TCONS_00055416-exon-scaffold_253-1575043694:692388..692676Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1491911889:692889..692983TCONS_00055416-exon-scaffold_253-1491911889:692889..692983Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1510915933:692889..692983TCONS_00055416-exon-scaffold_253-1510915933:692889..692983Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1575043694:692889..692983TCONS_00055416-exon-scaffold_253-1575043694:692889..692983Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1491911889:693341..693470TCONS_00055416-exon-scaffold_253-1491911889:693341..693470Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1510915933:693341..693470TCONS_00055416-exon-scaffold_253-1510915933:693341..693470Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1575043694:693341..693470TCONS_00055416-exon-scaffold_253-1575043694:693341..693470Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1491911889:693686..694328TCONS_00055416-exon-scaffold_253-1491911889:693686..694328Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1510915933:693686..694328TCONS_00055416-exon-scaffold_253-1510915933:693686..694328Clytia hemisphaericaexon
TCONS_00055416-exon-scaffold_253-1575043694:693686..694328TCONS_00055416-exon-scaffold_253-1575043694:693686..694328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:684854..694328 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	12.4995	10.4939	4.91232	7.72518	1.93331	5.60764	4.75721	2.00115	1.30851	0.595151	1.15769	1.50406	1.53418	3.55645	0.501132	1.01622	1.069	1.75967	3.75949	0.529186	2.31239	4.22657	1.54912	0.572077	0.119245	0.663496
Blast
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BLAST of TCONS_00055416 vs. Swiss-Prot (Human)
Match: SP20H (Transcription factor SPT20 homolog OS=Homo sapiens GN=SUPT20H PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 5.247e-42
Identity = 102/290 (35.17%), Postives = 164/290 (56.55%), Query Frame = 2 
Query:    2 FYDGCVIVELRDYRRST---QKNFDTTYILLKPTSQTIVRDVNSLMSD-PKWSNEDKAKLESQLVLAMQPRLCLDPSPKVLYTANKIQHHANKWNHKGLRRSMKRFSQPYLNRAYLCSHTPSPPCLKLLDFIKQNKDKRSSNSFH-KLSRATQHTDMWKQRQLNLSVPSKIDVTSHAKLMELPKYTTDYTP------EKIQEIILEGEKTNNRSYYCRVTIQRRGSTGEYIGDLYL-----EEDHGKTKEDTKKDGRACRFSLVNRITAQRYLQQFQELYTEEGRKSVKI 823
            F+ GCVI E+RDYR+S+      + + +ILL+PT QT++ DV+S+ SD  KW+ EDK  LESQL+LA    LCLDPS  V  TAN++ ++  K N + ++R  KR+S+  LNR    SH P PP L+LLDF+++ K++++   +  K+S+A    DMWK+   NL++PS++DV  +AK+ +  K + D  P      +   + + E E    +    ++TI +      Y G +       E D   +   +  D  +  F + ++  A+R + Q+QEL   E +  VK+
Sbjct:  136 FHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAIPSEVDVEKYAKVEKSIK-SDDSQPTVWPAHDVKDDYVFECE-AGTQYQKTKLTILQSLGDPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCPVKM 423
The following BLAST results are available for this feature:
BLAST of TCONS_00055416 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SP20H5.247e-4235.17Transcription factor SPT20 homolog OS=Homo sapiens... [more]
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