TCONS_00055415 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055415
Unique NameTCONS_00055415
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2975

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055415 ID=TCONS_00055415|Name=TCONS_00055415|organism=Clytia hemisphaerica|type=transcript|length=2975bp
AAAGATAtgccagattttgaaaaacctgCCTTGAAGAAATCACTATTTGA
GCGACTTCTCAATGCTTATGTGGAGGAGAAGAAGCAACAACAAGAAAAAG
GGGATTTCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGAAGAC
GACCTTGGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGATATTC
ACTGatgttgaaaaagaaagatgGAAGTGATGTGGAGACGTATAAACTCC
CCTATGAGGAAAGTGAATTCTTAGATTACTTGGATACACAAGAACTACCT
CCTCTCCTTGTGGATGTTTTGGAGAGTGCTCAGGTTGATCTATTCTATGA
TGGTTGTGTCATTGTGGAGTTACGTGATTACAGACGAAGTACTCAGAAAA
ACTTTGATACCACTTACATTTTATTAAAACCAACCTCACAGACCATTGTT
CGTGATGTAAACTCATTGATGTCAGACCCGAAATGGAGTAACGAAGACAA
GGCCAAACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTGTGTT
TAGATCCTTCACCAAAGGTTCTTTACACTGCCAACAAAATACAACACCAT
GCCAATAAATGGAATCATAAAGGTTTACGAAGGTCAATGAAAAGATTTTC
ACAGCCCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCAC
CATGTTTGAAGCTGTTAGATTTcatcaaacaaaacaaagataaacGTTCC
AGTAATTCTTTCCATAAATTGAGTAGAGCCACCCAACATACTGACATGTG
GAAACAAAGACAACTCAACCTATCTGTGCCATCGAAAATAGACGTAACCT
CACATGCAAAACTGATGGAACTACCGAAATACACAACAGATTATACGCCA
GAGAAAATCCAAGAAATTATTTTGGAAGGCGAAAAGACCAACAACCGTTC
TTATTATTGTCGTGTTACCATCCAAAGACGTGGCTCAACAGGCGAATATA
TTGGCGATCTCTACCTAGAGGAAGACCATGGGAAAACGAAGGAAGATACG
AAGAAAGATGGGCGTGCATGCAGGTTTTCTCTGGTCAACCGAATCACAGC
GCAACGCTATTTACAACAGTTTCAAGAACTCTACACAGAAGAAGGTCGGA
AATCAgtcaaaatttcaacctttgTCGCAAACCAAGCACAAcgaaatcaa
caacaacaacagcaacaagcACAAAACAGTAACAACGCCTCACAACAAGC
CAAAACACAAgcacaacaacagcaacaacagaCTGCTCAGATCTTACAAC
AAGCTGCACACCAGGCTGCGACACAAAAGATCATTGTTTCGTCAGTTCCG
ACATCCACGACACAAATGACAACCCATACCATCGTCAATCAGAATCGCAC
GTTCACTGTGGCTCAGAACCCAGTCATTTCACATGGTGGAAATACATACA
TTCTTGCAAGCTCGGCACTTCAACAATCACTTAACTTGGGATCCAATGTT
GTACCAATGTCGTTATCAAGGAATCCTTACATAGTAAATTCATCAGGAAA
CCTTCAACAAGCTGTATCAACCAAAACCAACCAATCGCCAAGCAAAATTA
TTGGAGCGTCTAATGAAAATGCACAGCTAACAACAGCTTACATCCAATCT
GTATCGGGTGCAACGATAGGAGGAACTTCACATGGTCAACTAACGGCAGT
TCCTATCGCAGTACAAGGAAACAATGTCAGTTTGGTCCCTGGTAATCAGT
TCATAGCAGCCAAAGCATCTCCACAAACAATACGTCCAGCAGGTGCCACT
GGGCAAATCATGCTGCAGGTACCAGGCAATCTTGTACCACTCTCTCAAAT
GACCAGAGTAGCTGGTGGACCACAAAAGGGACAAATTCCTGGTGCTGGCA
TGGCTTCGGTTATGGTCCACGGGAAGCAAGTCATGGTTCAGGGAGGCGCC
ATGATACAGGGCCAAGCTACCTTCATACCTAACCAAGCACCATTGATCCC
AGGTCTTCAAGGTGGTCAGACAGCCATCATTCAAGGTGGTTCCATCTTCG
TGCAAGGTCAACCAGGACAAACACAAGGACAAACTGTCATGATACAGGGA
CAGCCAGGACAACATCAAACTGGTCAGAATACTTTGATCCAAGGACAAGC
ACTGCAAGGTCAACCTGTATTCATCCAAGGTCAACCGAATGGCCAAACGC
AGGTTGTTCAAGGTCAAGCAATCATGTTGCAGGGCAATCAAGGTGGACAC
CAGGGCCAAGTTCAATTGATCACAACTTCAACATCAAGCGGCGGCCAACA
ACTTCAAATCGTCCCTCAAATACAAAAACAAGCAGTAATTACAAGTTCAG
CTGGACGCACGCAATCATCTACCGCTCTCTCTGCTTTAACATCACAAGTT
AACTTGATCCCTATGCAACAGAGTGGACAACAATATCAACCCATCGTTCA
ATTCACTACTTCCGCCCAACCCCGCCCTGTTCAACAGAGGCGTAAAAGTG
CTTCTCAACCCAACGCAGCGGGTGGTGGGCGGAAGCGTGCCCCTGCACCT
ACTAAACCTTCTCCCCAATCACAGTAAAACACCCCAAACCTTTTTCCATT
TCACATCTGTATGATTCTCTTACCTTTAATTCCGCCTAATTGATCTAGAA
GTGTTCTGTTCTGAATGAACTACTTTTGATATATCATCAATGGCAAAATG
TCACTTTACTAGTCTTCTTGGATTTAcgaagttttcaatttttaagtgCG
GCATACATAGTCATAATAATGATTTCAttgtgaaaacattttttctgttg
caGGTGTTGTATAGTTTAAGTTACAATCTCTTTTGTATATCACCAAATCT
CTTCTGCTATAAACTACTTATTATTATGGACTGTATATACTTTTTTTAAC
TACTTTTGACACAAAATTGACAACACATTTAAATGTTTCTTTAATAATCT
TAggatattcaaaaatttttagaac
Run BLAST on NCBI

transcript from alignment at scaffold_253:683012..694328+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055415 ID=TCONS_00055415|Name=TCONS_00055415|organism=Clytia hemisphaerica|type=transcript|length=11317bp|location=Sequence derived from alignment at scaffold_253:683012..694328+ (Clytia hemisphaerica)
AAAGATAtgccagattttgaaaaacctgCCTTGAAGTGAGTATAataaca
taaaaaaatattttgattgtgTTATTAACTATGCTACAAATACAAGGTGT
TGTGAATTTATTTGCTGTATTTTGAAACCTCTGttagaaagaaaaaatca
gtcccatttattgactttttaaaatttttatacaaatttgatTTAGTGGA
GTGCTGAATAAGTTTTTTGAGAGAAATAAATTTGGGAGATGGTtgggaaa
aagatttttgatgggaattcattttggcaatttttggtcaaaaatctTCA
TTAGATATTCTCATTAAAATCACATTATTCATATAGGAAATCACTATTTG
AGCGACTTCTCAATGCTTATGTGGAGGAGAAGAAGCAACAACAAGAAAAA
GGGGTAAACTAGCAATTAAAATAAGCTTTTTTTTCTCCATAGTATATGGG
TTGATATCAAAATATCCCATCATGTTTTATTCCACCATGGTATGTGATAT
AGTGTTATAAGCTTATTAAAGTTTATAAGAATGAAAGTGCACTTTTTcca
atctttttgaaatatgataaacAATAGATATTACATTGAACAACTACTGA
AATTCAGTATGAAATAATATTGAaacacttttatttttccttaaGGATTT
CAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGAAGACGACCTTG
GTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGATATTCACTGatg
ttgaaaaagaaagatgGAAGTGATGTGGAGACGTATAAACTCCCCTATGA
GGTAATTTGTATTAGGTAATTACATAGTCTTTAAGGGGTAGAACATTATG
ACATATCTGTAAAATCCTAATTTAGTGAGGTTTTGCTAAATATGAGAGGA
TACTTAGATCCATGTGACATTATTTTGCTAATGAAATTACTTGAAACTGA
AGAGGATAAAGCCTGAGTCATTATTATTGTTTACATTGAAATgagtgaaa
aatataaaaatacttcTGGTTTTGAAATCATCATGTCAATCATTGATTTG
TTTCCTGATTATTATTTACCTTTATAGGAAAGTGAATTCTTAGATTACTT
GGATACACAAGAACTACCTCCTCTCCTTGTGGATGTTTTGGAGAGTGCTC
AGGTTTGTAGGTCCATCACAACAACATACTTAACGAAGTTGGAATCGTAC
ATAATGTCAGCTTTGTCAAGCAGAATCCTCTCAAATTTTAGATGATCgtg
ctattcatgatattataccaccctaaATATTTTCCCAAACAAAGGGTATT
GGTTTTCAAATattagaagctgaaaacccacttttCTTGGTATTTTGTAC
CTTCCCTACAATTTCATGCACCTCGCTTTTAAAGAATAAGCTCTAGtcta
gacggccgactttctgtcctgcctattctaattgttagtgTAGGCAGAAA
GCGTAcacaaagttggcagttaaaatctttgcttggaaaagattgaaaga
agtcattgcgttgacgtcaaaaaagggcaatgcattgactttagacagcc
cactttattaagcccactttaattcacaattagaataggcagggcgaaaa
gtgggccgtctaaactagagctaacaTCCACCTGTTTGttattcttttga
aaagaattagAAATTAGAAATGTTAAAGAGACTGAAATCCTATCAccaaa
tttttgcttttcaACTGCCTTCAGAACTCtcattttttcattgtttatta
ctttttgataaaattttatacTACAGAAAATTAAATATATCCCTATGTAA
CGATGTTAAGAAATTCTTTGTTTTCCATGAATAGGTTGATCTATTCTATG
ATGGCTGTGTCATTGTGGAGTTACGTGATTACAGAAGAAGTACTCAGAAA
AACTTTGATACCACCTACATTTTATTAAAACCAACCTCACAGGTAAGCAG
TATTTTGTTTAAAGTTGTATTTATTTCTCTTCAGGAACAAACTCCTTTTA
ATACACATTTGTTCTCTTACTTGGttgtagattttattttcattgaagCA
TTTTCCAACTGATTTTGGTCATAAGAGTACTGTACTATGTTTAGTGTAAA
CTACCTATATCTAATATATTTGTCTCTCTGAAATCTTTGTAGACCATTGT
TCGTGATGTAAACTCATTGATGTCAGACCCGAAATGGAGTAACGAAGACA
AGGCCAAACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTGTGT
TTAGATCCTTCACCAAAGGTTCTTTACACTGCCAACAAAATACAACACCA
TGCCAATAAATGGAATCATAAAGGTTTACGAAGGTAAACACCAATGGATT
CAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAATGACAAACCCAATG
TCACTACCAATAAATAAATCTTACCTGATTAAACATGAACCTAATCAATG
TTTTAACACTATTCAGCTAGCATATTATCCAGTATTATCCAAAGCCCATT
CTATTTTAGGTCAATGAAAAGATTTTCACAGCCCTACTTGAACCGTGCAT
ATTTATGTTCTCACACACCTTCGCCACCATGTTTGAAGCTGTTAGATTTC
ATCAAACAAAACAAANgaaaaatataaaaatacttcTGGTTTTGAAATCA
TCATGTCAATCATTGATTTGTTTCCTGATTATTATTTACCTTTATAGGAA
AGTGAATTCTTAGATTANTTAAAGTTTATAAGAATGAAAGTGCACTTTTT
ccaatctttttgaaatatgataaacAATAGATATTACATTGAACAACTAC
TGAAATTCAGTATGAAATAATATTGAaacacttttatttttccttaaGGA
TTTCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGAAGACGACC
TTGGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGATATTCACTG
atgttgaaaaagaaagatgGAAGTGATGTGGAGACGTATAAACTCCCCTA
TGAGGTAATTTGTATTAGGTAATTACATAGTCTTTAAGGGGTAGAACATT
ATGACATATCTGTAAAATCCTAATTTAGTGAGGTTTTGCTAAATATGAGA
GGATACTTAGATCCATGTGACATTATTTTGCTAATGAAATTACTTGAAAC
TGAAGAGGATAAAGCCTGAGTCATTATTATTGTTTACATTGAAATgagtg
aaaaatataaaaatacttcTGGTTTTGAAATCATCATGTCAATCATTGAT
TTGTTTCCTGATTATTATTTACCTTTATAGGAAAGTGAATTCTTAGATTA
CTTGGATACACAAGAACTACCTCCTCTCCTTGTGGATGTTTTGGAGAGTG
CTCAGGTTTGTAGGTCCATCACAACAACATACTTAACGAAGTTGGAATCG
TACATAATGTCAGCTTTGTCAAGCAGAATCCTCTCAAATTTTAGATGATC
gtgctattcatgatattataccaccctaaATATTTTCCCAAACAAAGGGT
ATTGGTTTTCAAATattagaagctgaaaacccacttttCTTGGTATTTTG
TACCTTCCCTACAATTTCATGCACCTCGCTTTTAAAGAATAAGCTCTAGt
ctagacggccgactttctgtcctgcctattctaattgttagtgTAGGCAG
AAAGCGTAcacaaagttggcagttaaaatctttgcttggaaaagattgaa
agaagtcattgcgttgacgtcaaaaaagggcaatgcattgactttagaca
gcccactttattaagcccactttaattcacaattagaataggcagggcga
aaagtgggccgtctaaactagagctaacaTCCACCTGTTTGttattcttt
tgaaaagaattagAAATTAGAAATGTTAAAGAGACTGAAATCCTATCACC
AAATTTTGCTTTTCAACTGCCTTCAGAACTCtcattttttcattgtttat
tactttttgataaGATTTTATACTACAGAAAATTAAATATATTCCTATGT
AACGATCGATGTTAAGAAATTCTTTGTTTTCCATGAATAGGTTGATCTAT
TCTATGATGGTTGTGTCATTGTGGAGTTACGTGATTACAGACGAAGTACT
CAGAAAAACTTTGATACCACTTACATTTTATTAAAACCAACCTCACAGGT
AAGCAGTGTTGTGTTTATTTCTCTTCAGGAACAAACTCCTTTTAATACAC
ATTTGTTCTCTTACTTGGttgtagattttattttcattgaagCATTTTCC
AACTGATTTTGGTCATAAGAGTACTGTACTATGTTTAGTGTAAACTACCT
ATATCTAATATATTTGTCTCTCTGAAATCTTTGTAGACCATTGTTCGTGA
TGTAAACTCATTGATGTCAGACCCGAAATGGAGTAACGAAGACAAGGCCA
AACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTGTGTTTAGAT
CCTTCACCAAAGGTTCTTTACACTGCCAACAAAATACAACACCATGCCAA
TAAATGGAATCATAAAGGTTTACGAAGGTAAACACCAATGGATTCAGTGT
TAGTTCAGTTCAAGACTTTCTGATAGGCAATGACAAACCCAATGTCACTA
CCAATAAATAAATCTTACCTGATTAAACATGAACCTAATCAATGTTTTAA
CACTATTCAGCTAGCATATTATCCAGTATTATCCAAAGCCCATTCTATTT
TAGGTCAATGAAAAGATTTTCACAGCCCTACTTGAACCGTGCATATTTAT
GTTCTCACACACCTTCGCCACCATGTTTGAAGCTGTTAGATTTcatcaaa
caaaacaaagataaacGTTCCAGTAATTCTTTCCATAAATTGAGTAGAGC
CACCCAACATACTGACATGTGGAAACAAAGACAACTCAACCTATCTGTGC
CATCGAAAATAGACGTTAGTTATTCTTTTTTATACATTCTAACTTCACTA
TACCATACACCtcctcacagacccactgggactccttcccactggaaaaa
ttggcctaaATATCGTCcctagtggaaaattatacactTAATTTGTATCC
CAACTAAAAATAATCCAATGAACTAATCCCCACTACTTATATCATGCTAT
TTTCTatcctcactgaattttctgacttaaaaacaatggaatttaaatcc
aCAGTCATAAAAGTATAGGAATATCGATCCCCAACgaatttcagtccgtt
atttttacccccactggctgaaaaaatcccacccccttctcacacacccg
agaagggggtgtatcatttAATACCGATTCTTCATATCTCACGGCTTAAA
GAGCTCAAAGTATGAACTAATCATGAACTAACAGTGACTCCTTGCANGGA
TTCAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAATGACAAACCCAA
TGTCACTACCAATAAATAAATCTTACCTGATTAAACATGAACCTAATCAA
TGTTTTAACACTATTCAGCTAGCATATTATCCAGTATTATCCAAAGCCCA
TTCTATTTTAGGTCAATGAAAAGATTTTCACAGCCCTACTTGAACCGTGC
ATATTTATGTTCTCACACACCTTCGCCACCATGTTTGAAGCTGTTAGATT
TcatcaaacaaaacaaagataaacGTTCCAGTAATTCTTTCCATAAATTG
AGTAGAGCCACCCAACATACTGACATGTGGAAACAAAGACAACTCAACCT
ATCTGTGCCATCGAAAATAGACGTTAGTTATTCTTTTTTATACATTCTAA
CTTCACTATACCATACACCtcctcacagacccactgggactccttcccac
tggaaaaattggcctaaATATCGTCcctagtggaaaattatacactTAAT
TTGTATCCCAACTAAAAATAATCCAATGAACTAATCCCCACTACTTATAT
CATGCTATTTTCTatcctcactgaattttctgacttaaaaacaatggaat
ttaaatccaCAGTCATAAAAGTATAGGAATATCGATCCCCAACgaatttc
agtccgttatttttacccccactggctgaaaaaatcccaccgggtgtgtg
agaagggggtgtatcatttAATACCGATTCTTCATATCTCACGGCTTAAA
GAGCTCAAAGTATGAACTAATCGTGAACTAACAATGACTCCTTGCAAACA
GTATTTGTCTATCATCGTTAAAAGTTTCGATGGTGGTCGAAAGGAATAAG
TTAtttgatatttcaattttagtttaaaCCACGACTCTCATTTTACAAAC
TCTTTTAGGTAACCTCACATGCAAAACTGATGGAACTACCGAAATACACA
ACAGATTATACGCCAGAGAAAATCCAAGAAATTATTTTGGAAGGCGAAAA
GACCAACAACCGTTCTTATTATTGTCGTGTTACCATCCAAAGACGTGGCT
CAACAGGCGAATATATTGGCGATCTCTACCTAGAGGAAGACCATGGGAAA
ACGAAGGAAGATACGAAGAAAGATGGGCGTGCATGCAGGTTTGTCTTTTT
TGTTAATTACCTTAGAGAGACTTGGACGGTGTTTAGAAAACACCCATGAG
GACAGATAGTCTAGAATATGTCAACTCAAATGCTGTCTTGACTTCAAAAG
TTATGGAAACCTTTAGGATCGTTATTTGACCTGACAGATTTGTTTTATTT
GTAGAATTTTTCCTGGTACCTTAGGTTATGGAGTTCAATTCTATAGTTAG
ATCTATTTATCAAGCTTTGTATCATTtggtttttatcattttattttaca
ttcTTTTCGAAAGGTTTTCTCTGGTCAACCGAATCACAGCGCAACGCTAT
TTACAACAGTTTCAAGAACTCTACACAGAAGAAGGTCGGAAATCAgtcaa
aatttcaacctttgTCGCAAACCAAGCACAAcgaaatcaacaacaacaac
agcaacaagcACAAAACAGTAACAACGCCTCACAACAAGCCAAAACACAA
gcacaacaacagcaacaacagaCTGCTCAGATCTTACAACAAGCTGCACA
CCAGGCTGCGACACAAAAGATCATTGTTTCGTCAGTTCCGACATCCACGA
CACAAATGACAACCCATACCATCGTCAATCAGAATCGCACGTTCACTGTG
GCTCAGAACCCAGTCATTTCACATGGTGGAAATACATACATTCTTGCAAG
CTCGGCACTTCAACAATCACTTAACTTGGGATCCAATGTTGTACCAATGT
CGTTATCAAGTTCGTTTTTTGAGTTTTACTTAATATCTTTCTTGTGTCTC
TACTAAGATTTTCTCATCTAAgattttctctatttttcgCTTCTAGAATA
GTTCCTCTGTTCCACATCCAAAATCTTATACAACATAACCAGTAAACTCT
CTTTTTTCTCTCTACATGAGTTTACATAACTCAAACGCCAAGTAAGGACA
ACCCAGTAACTCTTCGAGTTGCAGAGTAAAAAATCAATACCTTAAGGGGT
CAGAAAGAATGTTTCGACTACATTGAAATAATGTGCGAGTTATGAAGAGA
TGCTTTAACATTCAATTTAATTATTCAATCTTCTAGGGAATCCTTACATA
GTAAATTCATCAGGAAACCTTCAACAAGCTGTATCAACCAAAACCAACCA
ATCGCCAAGCAAAATTATTGGAGCGTCTAATGAAAATGCACAGCTAACAA
CAGCTTACATCCAAGTAACTTCTCATAAATTGATTCTTCCTTTTTTAATT
CCAATTATCACCCAAGGGTGTTTAATTTTGAGCACCATCTAGATTACTTC
TGATTGACACGACCATTCTCAAACCGCTCAACTCGTAATACAAATGCTTG
TTCAGTTAGCACTAATCATTTTCATACAACGATAAATATTGTTTTGCTTC
AGTCTGTATCGGGTGCAACGATAGGAGGAACTTCACATGGTCAACTAACG
GCAGTTCCTATCGCAGTACAAGGAAACAATGTCAGTTTGGTCCCTGGTAA
TCAGTTCATAGCAGCCAAAGCATCTCCACAAACAATACGTCCAGCAGGTG
CCACTGGGCAAATCATGCTGCAGGTACATgatcaaatcttttttgttgga
ataataatattttgcaaaaagtATCAAGTTATTGACTCTAGTTGGTCTAA
GTTGTCTTTGCTCCAACTAATTTTATTTGGCATTTCTTTAATAGTGTGAA
TTGAGCTCTGGTTCTGGTTTTCCTGGATATTAAATTGTATGTCATCCAAT
ACcttacttatttttcaaagtattgtaattttaaagcttaaaagtatttg
ttgtttttgtaaacTTTCCAGGTACCAGGCAATCTTGTACCACTCTCTCA
AATGACCAGAGTAGCTGGTGGACCACAAAAGGGACAAATTCCTGGTGCTG
GCATGGCTTCGGTTATGGTCCACGGGAAGCAAGTCATGGTTCAGGGAGGC
GCCATGATACAGGGCCAAGCTACCTTCATACCTAACCAAGCACCATTGAT
CCCAGGTCTTCAAGGTGGTCAGACAGCCATCATTCAAGGTGGTTCCATCT
TCGTGCAAGGTCAACCAGGACAAACACAAGGACAAACTGTCATGATACAG
GGACAGCCAGGTAACTTCTTGACCTTTCTGTGCTCCTTTTTATTCAGATA
AAtcgtaatttgaaatttgaaaactcTGTGATAAAATGGGATTTCTAGCA
TTACTTATTGAAATTATTTGATAAGCATAAGCAGTTACCATCTCTTCCTC
GGCATATTTTTTTCTCGTTGTTCATTTCAATATCCAACCCGTAGTAACTC
GTTTCGAGCTGTATAATTTTGTTTGACTTAGGACAACATCAAACTGGTCA
GAATACTTTGATCCAAGGACAGGCACTGCAAGGTCAACCTGTATTCATCC
AAGGTCAACCGAANGACCATTCTAAAACCGCTCAACTCGTAATACAAATG
CTTGTTCAGTTAGCACTAATCATTTTCATACAACGATAAATATTGTTTTG
CTTCAGTCTGTATCGGGTGCAACGATAGGAGGAACTTCACATGGTCAACT
AACGGCAGTTCCTATCGCAGTACAAGGAAACAATGTCAGTTTGGTCCCTG
GTAATCAGTTCATAGCAGCCAAAGCATCTCCACAAACAATACGTCCAGCA
GGTGCCACTGGGCAAATCATGCTGCAGGTACatcatcaaatcttttttgt
tggaataacaatattttgcaaaatgtaTCAAGTTATTGACTCTAGTTGGT
CTAAGTTGTCTTTGTTCCAACTGATTTTATTTGGCATTTCTTTAATACTG
TGAATTGGGCTCTGGTTCTGGTTTTCCTGGATATTAAATTGTATGTCATC
CAATACcttacttatttttcaaagtattgtaattttaaagcttaaagcta
tttgttgtttttgtaaacTTTTCCAGGTACCAGGCAATCTTGTACCACTC
TCTCAAATGACCAGAGTAGCTGGTGGACCACAAAAGGGACAAATTCCTGG
TGCTGGCATGGCTTCAGTTATGGTCCACGGGAAGCAAGTCATGGTTCAGG
GAGGCGCCATGATACAGGGCCAAGCTACCTTCATACCTAACCAAGCACCA
TTGATCCCAGGTCTTCAAGGTGGTCAGACAGCCATCATTCAAGGTGGTTC
CATCTTCGTGCAAGGTCAACCAGGACAAACACAAGGACAAACTGTCATGA
TACAGGGACAGCCAGGTAACTTCTTGACCTTTCTGTGCTCCTTTTTATTC
AGATAAatcgtaatttttgaaatttgaaaactcTGTGATAAAATGGGATT
TCTAGCATTACTTATTGAAATTATTTGATAAGCATAAGCAGTTACCAACT
CTTCCTCGGCATATTTTTTTCTCGTTGTTCCAACCCGTAGTAACTCGTTT
CGAGCTGTATAATTTTGTTTGACTTAGGACAACATCAAACTGGTCAGAAT
ACTTTGATCCAAGGACAAGCACTGCAAGGTCAACCTGTATTCATCCAAGG
TCAACCGAATGGCCAAACGCAGGTAAGCTATTCAACATTTAAATAACAGT
TGACAGTTTCAAATGATTAATATGGTGAAAATATTAGTAGCTATTTAGTA
CTCTACTTTTTAATGTATTTTATAAATattatttgctttttctcataagG
TACACCATAATATACACTGGTAGCGTTTTTCCAATTTATTACCAACGAAT
TTCTTTTACTGTACACTTGTATGATAAAAAAGGCGTCGAGTAAGATATAT
ACTTCGGTAATGTCAAGACGAAGCTTCATTGCATATTGTTTGTGATTGTA
GTTCATGACGAAATTATAGCCATTGTCGGAGTTCAATCACTATTCAAAGT
ATTTTTCACCCTTTCTTCTTCCTCTACAGGTTGTTCAAGGTCAAGCAATC
ATGTTGCAGGGCAATCAAGGTGGACACCAGGGCCAAGTTCAATTGATCAC
AACTTCAACATCAAGCGGCGGCCAACAACTTCAAATCGTCCCTCAAATAC
AAAAACAAGGTATAACTCGCCCATTTTCATCTTTCTATAATAATAGTACC
GGAGCTTtttgtatttgtatttttttgtaatgaaactttatcaaatgcaa
acttaaaatttacttttaagATTTACAATATTAGACCCTGTTAGATTTTT
TGCCCACGTCTGAAAGATCGTTGTAAAAGACCTTACAAAAACACTTATTA
TTCTTGATATTATTCTTATTTCAGCAGTAATTACAAGTTCAGCTGGACGC
ACGCAATCATCTACCGCTCTCTCTGCTTTAACATCACAAGTTAACTTGAT
CCCTATGCAACAGAGTGGACAACAATATCAACCCATCGTTCAATTCACTA
CTTCCGCCCAACCCCGCCCTGTTCAACAGAGGCGTAAAAGTGCTTCTCAA
CCCAACGCAGCGGGTGGTGGGCGGAAGCGTGCCCCTGCACCTACTAAACC
TTCTCCCCAATCACAGTAAAACACCCCAAACCTTTTTCCATTTCACATCT
GTATGATTCTCTTACCTTTAATTCCGCCTAATTGATCTAGAAGTGTTCTG
TTCTGAATGAACTACTTTTGATATATCATCAATGGCAAAATGTCACTTTA
CTAGTCTTCTTGGATTTAcgaagttttcaatttttaagtgCGGCATACAT
AGTCATAATAATGATTTCAttgtgaaaacattttttctgttgcaGGTGTT
GTATAGTTTAAGTTACAATCTCTTTTGTATATCACCAAATCTCTTCTGCT
ATAAACTACTTATTATTATGGACTGTATATACTTTTTTTAACTACTTTTG
ACACAAAATTGACAACACATTTAAATGTTTCTTTAATAATCTTAggatat
tcaaaaatttttagaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034875XLOC_034875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055415-exon-scaffold_253-1491911889:683012..683046TCONS_00055415-exon-scaffold_253-1491911889:683012..683046Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1510915933:683012..683046TCONS_00055415-exon-scaffold_253-1510915933:683012..683046Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1575043694:683012..683046TCONS_00055415-exon-scaffold_253-1575043694:683012..683046Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1491911889:683348..683414TCONS_00055415-exon-scaffold_253-1491911889:683348..683414Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1510915933:683348..683414TCONS_00055415-exon-scaffold_253-1510915933:683348..683414Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1575043694:683348..683414TCONS_00055415-exon-scaffold_253-1575043694:683348..683414Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1491911889:683657..683812TCONS_00055415-exon-scaffold_253-1491911889:683657..683812Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1510915933:683657..683812TCONS_00055415-exon-scaffold_253-1510915933:683657..683812Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1575043694:683657..683812TCONS_00055415-exon-scaffold_253-1575043694:683657..683812Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1491911889:684089..684163TCONS_00055415-exon-scaffold_253-1491911889:684089..684163Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1510915933:684089..684163TCONS_00055415-exon-scaffold_253-1510915933:684089..684163Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1575043694:684089..684163TCONS_00055415-exon-scaffold_253-1575043694:684089..684163Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1491911889:687052..687159TCONS_00055415-exon-scaffold_253-1491911889:687052..687159Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1510915933:687052..687159TCONS_00055415-exon-scaffold_253-1510915933:687052..687159Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1575043694:687052..687159TCONS_00055415-exon-scaffold_253-1575043694:687052..687159Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1491911889:687348..687538TCONS_00055415-exon-scaffold_253-1491911889:687348..687538Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1510915933:687348..687538TCONS_00055415-exon-scaffold_253-1510915933:687348..687538Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1575043694:687348..687538TCONS_00055415-exon-scaffold_253-1575043694:687348..687538Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1491911889:687715..687925TCONS_00055415-exon-scaffold_253-1491911889:687715..687925Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1510915933:687715..687925TCONS_00055415-exon-scaffold_253-1510915933:687715..687925Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1575043694:687715..687925TCONS_00055415-exon-scaffold_253-1575043694:687715..687925Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1491911889:689270..689499TCONS_00055415-exon-scaffold_253-1491911889:689270..689499Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1510915933:689270..689499TCONS_00055415-exon-scaffold_253-1510915933:689270..689499Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1575043694:689270..689499TCONS_00055415-exon-scaffold_253-1575043694:689270..689499Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1491911889:689775..690220TCONS_00055415-exon-scaffold_253-1491911889:689775..690220Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1510915933:689775..690220TCONS_00055415-exon-scaffold_253-1510915933:689775..690220Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1575043694:689775..690220TCONS_00055415-exon-scaffold_253-1575043694:689775..690220Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1491911889:690548..690675TCONS_00055415-exon-scaffold_253-1491911889:690548..690675Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1510915933:690548..690675TCONS_00055415-exon-scaffold_253-1510915933:690548..690675Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1575043694:690548..690675TCONS_00055415-exon-scaffold_253-1575043694:690548..690675Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1491911889:690864..691034TCONS_00055415-exon-scaffold_253-1491911889:690864..691034Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1510915933:690864..691034TCONS_00055415-exon-scaffold_253-1510915933:690864..691034Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1575043694:690864..691034TCONS_00055415-exon-scaffold_253-1575043694:690864..691034Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1491911889:691283..691571TCONS_00055415-exon-scaffold_253-1491911889:691283..691571Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1510915933:691283..691571TCONS_00055415-exon-scaffold_253-1510915933:691283..691571Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1575043694:691283..691571TCONS_00055415-exon-scaffold_253-1575043694:691283..691571Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1491911889:692889..692983TCONS_00055415-exon-scaffold_253-1491911889:692889..692983Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1510915933:692889..692983TCONS_00055415-exon-scaffold_253-1510915933:692889..692983Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1575043694:692889..692983TCONS_00055415-exon-scaffold_253-1575043694:692889..692983Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1491911889:693341..693470TCONS_00055415-exon-scaffold_253-1491911889:693341..693470Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1510915933:693341..693470TCONS_00055415-exon-scaffold_253-1510915933:693341..693470Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1575043694:693341..693470TCONS_00055415-exon-scaffold_253-1575043694:693341..693470Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1491911889:693686..694328TCONS_00055415-exon-scaffold_253-1491911889:693686..694328Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1510915933:693686..694328TCONS_00055415-exon-scaffold_253-1510915933:693686..694328Clytia hemisphaericaexon
TCONS_00055415-exon-scaffold_253-1575043694:693686..694328TCONS_00055415-exon-scaffold_253-1575043694:693686..694328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:683012..694328 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.79565e-08	0.000526446	0.00315749	4.91696e-06	0	0	1.96667e-09	0	0.215422	0	0	0	0	0	0	0	0	0	0	0	0.000238504	0.000875329	0	0	0	0
Blast
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BLAST of TCONS_00055415 vs. Swiss-Prot (Human)
Match: SP20H (Transcription factor SPT20 homolog OS=Homo sapiens GN=SUPT20H PE=1 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 1.191e-80
Identity = 155/393 (39.44%), Postives = 244/393 (62.09%), Query Frame = 1 
Query:   34 KKSLFERLLNAYVEEKKQQQEKGDFNKESMLLQKIVKEDDLGVLIVNLYPGSDGYSLMLKKKDGSDVETYKLPYEESEFLDYLDTQELPPLLVDVLESAQVDLFYDGCVIVELRDYRRST---QKNFDTTYILLKPTSQTIVRDVNSLMSD-PKWSNEDKAKLESQLVLAMQPRLCLDPSPKVLYTANKIQHHANKWNHKGLRRSMKRFSQPYLNRAYLCSHTPSPPCLKLLDFIKQNKDKRSSNSFH-KLSRATQHTDMWKQRQLNLSVPSKIDVTSHAKLMELPKYTTDYTP------EKIQEIILEGEKTNNRSYYCRVTIQRRGSTGEYIGDLYL-----EEDHGKTKEDTKKDGRACRFSLVNRITAQRYLQQFQELYTEEGRKSVKI 1164
            +KS+F++L + Y+EE +++ E     +   LL+K+V ++ L  L+VNLYPG++GYSLML+ K+GSD ET +LPYEE E L+YLD +ELPP+LVD+LE +QV++F+ GCVI E+RDYR+S+      + + +ILL+PT QT++ DV+S+ SD  KW+ EDK  LESQL+LA    LCLDPS  V  TAN++ ++  K N + ++R  KR+S+  LNR    SH P PP L+LLDF+++ K++++   +  K+S+A    DMWK+   NL++PS++DV  +AK+ +  K + D  P      +   + + E E    +    ++TI +      Y G +       E D   +   +  D  +  F + ++  A+R + Q+QEL   E +  VK+
Sbjct:   33 RKSVFQKLYDLYIEECEKEPEVKKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAIPSEVDVEKYAKVEKSIK-SDDSQPTVWPAHDVKDDYVFECE-AGTQYQKTKLTILQSLGDPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCPVKM 423
The following BLAST results are available for this feature:
BLAST of TCONS_00055415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SP20H1.191e-8039.44Transcription factor SPT20 homolog OS=Homo sapiens... [more]
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