TCONS_00055406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055406
Unique NameTCONS_00055406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3057

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055406 ID=TCONS_00055406|Name=TCONS_00055406|organism=Clytia hemisphaerica|type=transcript|length=3057bp
AATGacaatataaaataaacaaataaaaatgttatcaACAGTTGATGCAC
TTGGATCTTCTGATCCATTCAATATGATGGTGAAAGATAtgccagatttt
gaaaaacctgCCTTGAAGAAATCACTATTTGAGCGACTTCTCAATGCTTA
TGTGGAGGAGAAGAAGCAACAACAAGAAAAAGGGGATTTCAACAAGGAGT
CCATGCTTCTTCAAAAGATAGTCAAGGAAGACGACCTTGGTGTTCTGATT
GTCAATCTGTATCCTGGTAGTGATGGATATTCACTGatgttgaaaaagaa
agatgGAAGTGATGTGGAGACGTATAAACTCCCCTATGAGGAAAGTGAAT
TCTTAGATTACTTGGATACACAAGAACTACCTCCTCTCCTTGTGGATGTT
TTGGAGAGTGCTCAGGTTGATCTATTCTATGATGGTTGTGTCATTGTGGA
GTTACGTGATTACAGACGAAGTACTCAGAAAAACTTTGATACCACTTACA
TTTTATTAAAACCAACCTCACAGACCATTGTTCGTGATGTAAACTCATTG
ATGTCAGACCCGAAATGGAGTAACGAAGACAAGGCCAAACTAGAATCTCA
ATTAGTTTTAGCTATGCAACCAAGACTGTGTTTAGATCCTTCACCAAAGG
TTCTTTACACTGCCAACAAAATACAACACCATGCCAATAAATGGAATCAT
AAAGGTTTACGAAGGTCAATGAAAAGATTTTCACAGCCCTACTTGAACCG
TGCATATTTATGTTCTCACACACCTTCGCCACCATGTTTGAAGCTGTTAG
ATTTcatcaaacaaaacaaagataaacGTTCCAGTAATTCTTTCCATAAA
TTGAGTAGAGCCACCCAACATACTGACATGTGGAAACAAAGACAACTCAA
CCTATCTGTGCCATCGAAAATAGACGTAACCTCACATGCAAAACTGATGG
AACTACCGAAATACACAACAGATTATACGCCAGAGAAAATCCAAGAAATT
ATTTTGGAAGGCGAAAAGACCAACAACCGTTCTTATTATTGTCGTGTTAC
CATCCAAAGACGTGGCTCAACAGGCGAATATATTGGCGATCTCTACCTAG
AGGAAGACCATGGGAAAACGAAGGAAGATACGAAGAAAGATGGGCGTGCA
TGCAGGTTTTCTCTGGTCAACCGAATCACAGCGCAACGCTATTTACAACA
GTTTCAAGAACTCTACACAGAAGAAGGTCGGAAATCAgtcaaaatttcaa
cctttgTCGCAAACCAAGCACAAcgaaatcaacaacaacaacagcaacaa
gcACAAAACAGTAACAACGCCTCACAACAAGCCAAAACACAAgcacaaca
acagcaacaacagaCTGCTCAGATCTTACAACAAGCTGCACACCAGGCTG
CGACACAAAAGATCATTGTTTCGTCAGTTCCGACATCCACGACACAAATG
ACAACCCATACCATCGTCAATCAGAATCGCACGTTCACTGTGGCTCAGAA
CCCAGTCATTTCACATGGTGGAAATACATACATTCTTGCAAGCTCGGCAC
TTCAACAATCACTTAACTTGGGATCCAATGTTGTACCAATGTCGTTATCA
AGGAATCCTTACATAGTAAATTCATCAGGAAACCTTCAACAAGCTGTATC
AACCAAAACCAACCAATCGCCAAGCAAAATTATTGGAGCGTCTAATGAAA
ATGCACAGCTAACAACAGCTTACATCCAATCTGTATCGGGTGCAACGATA
GGAGGAACTTCACATGGTCAACTAACGGCAGTTCCTATCGCAGTACAAGG
AAACAATGTCAGTTTGGTCCCTGGTAATCAGTTCATAGCAGCCAAAGCAT
CTCCACAAACAATACGTCCAGCAGGTGCCACTGGGCAAATCATGCTGCAG
GTACCAGGCAATCTTGTACCACTCTCTCAAATGACCAGAGTAGCTGGTGG
ACCACAAAAGGGACAAATTCCTGGTGCTGGCATGGCTTCAGTTATGGTCC
ACGGGAAGCAAGTCATGGTTCAGGGAGGCGCCATGATACAGGGCCAAGCT
ACCTTCATACCTAACCAAGCACCATTGATCCCAGGTCTTCAAGGTGGTCA
GACAGCCATCATTCAAGGTGGTTCCATCTTCGTGCAAGGTCAACCAGGAC
AAACACAAGGACAAACTGTCATGATACAGGGACAGCCAGGACAACATCAA
ACTGGTCAGAATACTTTGATCCAAGGACAAGCACTGCAAGGTCAACCTGT
ATTCATCCAAGGTCAACCGAATGGCCAAACGCAGGTTGTTCAAGGTCAAG
CAATCATGTTGCAGGGCAATCAAGGTGGACACCAGGGCCAAGTTCAATTG
ATCACAACTTCAACATCAAGCGGCGGCCAACAACTTCAAATCGTCCCTCA
AATACAAAAACAAGCAGTAATTACAAGTTCAGCTGGACGCACGCAATCAT
CTACCGCTCTCTCTGCTTTAACATCACAAGTTAACTTGATCCCTATGCAA
CAGAGTGGACAACAATATCAACCCATCGTTCAATTCACTACTTCCGCCCA
ACCCCGCCCTGTTCAACAGAGGCGTAAAAGTGCTTCTCAACCCAACGCAG
CGGGTGGTGGGCGGAAGCGTGCCCCTGCACCTACTAAACCTTCTCCCCAA
TCACAGTAAAACACCCCAAACCTTTTTCCATTTCACATCTGTATGATTCT
CTTACCTTTAATTCCGCCTAATTGATCTAGAAGTGTTCTGTTCTGAATGA
ACTACTTTTGATATATCATCAATGGCAAAATGTCACTTTACTAGTCTTCT
TGGATTTAcgaagttttcaatttttaagtgCGGCATACATAGTCATAATA
ATGATTTCAttgtgaaaacattttttctgttgcaGGTGTTGTATAGTTTA
AGTTACAATCTCTTTTGTATATCACCAAATCTCTTCTGCTATAAACTACT
TATTATTATGGACTGTATATACTTTTTTTAACTACTTTTGACACAAAATT
GACAACACATTTAAATGTTTCTTTAATAATCTTAggatattcaaaaattt
ttagaac
Run BLAST on NCBI

transcript from alignment at scaffold_253:682828..694328+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055406 ID=TCONS_00055406|Name=TCONS_00055406|organism=Clytia hemisphaerica|type=transcript|length=11501bp|location=Sequence derived from alignment at scaffold_253:682828..694328+ (Clytia hemisphaerica)
AATGacaatataaaataaacaaataaaaatgttatcaACAGTTGATGCAC
TTGGATCTTCTGTAAGTCTATTTACTACAGTATGATAAAACTTAGAAAGT
TTCTGATTTTAATCATTAATTCTCTTTTTCCCTAATAATAACAATTACGG
GTTTTCAATTTAGGATCCATTCAATATGATGGTGAAAGATAtgccagatt
ttgaaaaacctgCCTTGAAGTGAGTATAataacataaaaaaatattttga
ttgtgTTATTAACTATGCTACAAATACAAGGTGTTGTGAATTTATTTGCT
GTATTTTGAAACCTCTGttagaaagaaaaaatcagtcccatttattgact
ttttaaaatttttatacaaatttgatTTAGTGGAGTGCTGAATAAGTTTT
TTGAGAGAAATAAATTTGGGAGATGGTtgggaaaaagatttttgatggga
attcattttggcaatttttggtcaaaaatctTCATTAGATATTCTCATTA
AAATCACATTATTCATATAGGAAATCACTATTTGAGCGACTTCTCAATGC
TTATGTGGAGGAGAAGAAGCAACAACAAGAAAAAGGGGTAAACTAGCAAT
TAAAATAAGCTTTTTTTTCTCCATAGTATATGGGTTGATATCAAAATATC
CCATCATGTTTTATTCCACCATGGTATGTGATATAGTGTTATAAGCTTAT
TAAAGTTTATAAGAATGAAAGTGCACTTTTTccaatctttttgaaatatg
ataaacAATAGATATTACATTGAACAACTACTGAAATTCAGTATGAAATA
ATATTGAaacacttttatttttccttaaGGATTTCAACAAGGAGTCCATG
CTTCTTCAAAAGATAGTCAAGGAAGACGACCTTGGTGTTCTGATTGTCAA
TCTGTATCCTGGTAGTGATGGATATTCACTGatgttgaaaaagaaagatg
GAAGTGATGTGGAGACGTATAAACTCCCCTATGAGGTAATTTGTATTAGG
TAATTACATAGTCTTTAAGGGGTAGAACATTATGACATATCTGTAAAATC
CTAATTTAGTGAGGTTTTGCTAAATATGAGAGGATACTTAGATCCATGTG
ACATTATTTTGCTAATGAAATTACTTGAAACTGAAGAGGATAAAGCCTGA
GTCATTATTATTGTTTACATTGAAATgagtgaaaaatataaaaatacttc
TGGTTTTGAAATCATCATGTCAATCATTGATTTGTTTCCTGATTATTATT
TACCTTTATAGGAAAGTGAATTCTTAGATTACTTGGATACACAAGAACTA
CCTCCTCTCCTTGTGGATGTTTTGGAGAGTGCTCAGGTTTGTAGGTCCAT
CACAACAACATACTTAACGAAGTTGGAATCGTACATAATGTCAGCTTTGT
CAAGCAGAATCCTCTCAAATTTTAGATGATCgtgctattcatgatattat
accaccctaaATATTTTCCCAAACAAAGGGTATTGGTTTTCAAATattag
aagctgaaaacccacttttCTTGGTATTTTGTACCTTCCCTACAATTTCA
TGCACCTCGCTTTTAAAGAATAAGCTCTAGtctagacggccgactttctg
tcctgcctattctaattgttagtgTAGGCAGAAAGCGTAcacaaagttgg
cagttaaaatctttgcttggaaaagattgaaagaagtcattgcgttgacg
tcaaaaaagggcaatgcattgactttagacagcccactttattaagccca
ctttaattcacaattagaataggcagggcgaaaagtgggccgtctaaact
agagctaacaTCCACCTGTTTGttattcttttgaaaagaattagAAATTA
GAAATGTTAAAGAGACTGAAATCCTATCAccaaatttttgcttttcaACT
GCCTTCAGAACTCtcattttttcattgtttattactttttgataaaattt
tatacTACAGAAAATTAAATATATCCCTATGTAACGATGTTAAGAAATTC
TTTGTTTTCCATGAATAGGTTGATCTATTCTATGATGGCTGTGTCATTGT
GGAGTTACGTGATTACAGAAGAAGTACTCAGAAAAACTTTGATACCACCT
ACATTTTATTAAAACCAACCTCACAGGTAAGCAGTATTTTGTTTAAAGTT
GTATTTATTTCTCTTCAGGAACAAACTCCTTTTAATACACATTTGTTCTC
TTACTTGGttgtagattttattttcattgaagCATTTTCCAACTGATTTT
GGTCATAAGAGTACTGTACTATGTTTAGTGTAAACTACCTATATCTAATA
TATTTGTCTCTCTGAAATCTTTGTAGACCATTGTTCGTGATGTAAACTCA
TTGATGTCAGACCCGAAATGGAGTAACGAAGACAAGGCCAAACTAGAATC
TCAATTAGTTTTAGCTATGCAACCAAGACTGTGTTTAGATCCTTCACCAA
AGGTTCTTTACACTGCCAACAAAATACAACACCATGCCAATAAATGGAAT
CATAAAGGTTTACGAAGGTAAACACCAATGGATTCAGTGTTAGTTCAGTT
CAAGACTTTCTGATAGGCAATGACAAACCCAATGTCACTACCAATAAATA
AATCTTACCTGATTAAACATGAACCTAATCAATGTTTTAACACTATTCAG
CTAGCATATTATCCAGTATTATCCAAAGCCCATTCTATTTTAGGTCAATG
AAAAGATTTTCACAGCCCTACTTGAACCGTGCATATTTATGTTCTCACAC
ACCTTCGCCACCATGTTTGAAGCTGTTAGATTTCATCAAACAAAACAAAN
gaaaaatataaaaatacttcTGGTTTTGAAATCATCATGTCAATCATTGA
TTTGTTTCCTGATTATTATTTACCTTTATAGGAAAGTGAATTCTTAGATT
ANTTAAAGTTTATAAGAATGAAAGTGCACTTTTTccaatctttttgaaat
atgataaacAATAGATATTACATTGAACAACTACTGAAATTCAGTATGAA
ATAATATTGAaacacttttatttttccttaaGGATTTCAACAAGGAGTCC
ATGCTTCTTCAAAAGATAGTCAAGGAAGACGACCTTGGTGTTCTGATTGT
CAATCTGTATCCTGGTAGTGATGGATATTCACTGatgttgaaaaagaaag
atgGAAGTGATGTGGAGACGTATAAACTCCCCTATGAGGTAATTTGTATT
AGGTAATTACATAGTCTTTAAGGGGTAGAACATTATGACATATCTGTAAA
ATCCTAATTTAGTGAGGTTTTGCTAAATATGAGAGGATACTTAGATCCAT
GTGACATTATTTTGCTAATGAAATTACTTGAAACTGAAGAGGATAAAGCC
TGAGTCATTATTATTGTTTACATTGAAATgagtgaaaaatataaaaatac
ttcTGGTTTTGAAATCATCATGTCAATCATTGATTTGTTTCCTGATTATT
ATTTACCTTTATAGGAAAGTGAATTCTTAGATTACTTGGATACACAAGAA
CTACCTCCTCTCCTTGTGGATGTTTTGGAGAGTGCTCAGGTTTGTAGGTC
CATCACAACAACATACTTAACGAAGTTGGAATCGTACATAATGTCAGCTT
TGTCAAGCAGAATCCTCTCAAATTTTAGATGATCgtgctattcatgatat
tataccaccctaaATATTTTCCCAAACAAAGGGTATTGGTTTTCAAATat
tagaagctgaaaacccacttttCTTGGTATTTTGTACCTTCCCTACAATT
TCATGCACCTCGCTTTTAAAGAATAAGCTCTAGtctagacggccgacttt
ctgtcctgcctattctaattgttagtgTAGGCAGAAAGCGTAcacaaagt
tggcagttaaaatctttgcttggaaaagattgaaagaagtcattgcgttg
acgtcaaaaaagggcaatgcattgactttagacagcccactttattaagc
ccactttaattcacaattagaataggcagggcgaaaagtgggccgtctaa
actagagctaacaTCCACCTGTTTGttattcttttgaaaagaattagAAA
TTAGAAATGTTAAAGAGACTGAAATCCTATCACCAAATTTTGCTTTTCAA
CTGCCTTCAGAACTCtcattttttcattgtttattactttttgataaGAT
TTTATACTACAGAAAATTAAATATATTCCTATGTAACGATCGATGTTAAG
AAATTCTTTGTTTTCCATGAATAGGTTGATCTATTCTATGATGGTTGTGT
CATTGTGGAGTTACGTGATTACAGACGAAGTACTCAGAAAAACTTTGATA
CCACTTACATTTTATTAAAACCAACCTCACAGGTAAGCAGTGTTGTGTTT
ATTTCTCTTCAGGAACAAACTCCTTTTAATACACATTTGTTCTCTTACTT
GGttgtagattttattttcattgaagCATTTTCCAACTGATTTTGGTCAT
AAGAGTACTGTACTATGTTTAGTGTAAACTACCTATATCTAATATATTTG
TCTCTCTGAAATCTTTGTAGACCATTGTTCGTGATGTAAACTCATTGATG
TCAGACCCGAAATGGAGTAACGAAGACAAGGCCAAACTAGAATCTCAATT
AGTTTTAGCTATGCAACCAAGACTGTGTTTAGATCCTTCACCAAAGGTTC
TTTACACTGCCAACAAAATACAACACCATGCCAATAAATGGAATCATAAA
GGTTTACGAAGGTAAACACCAATGGATTCAGTGTTAGTTCAGTTCAAGAC
TTTCTGATAGGCAATGACAAACCCAATGTCACTACCAATAAATAAATCTT
ACCTGATTAAACATGAACCTAATCAATGTTTTAACACTATTCAGCTAGCA
TATTATCCAGTATTATCCAAAGCCCATTCTATTTTAGGTCAATGAAAAGA
TTTTCACAGCCCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTC
GCCACCATGTTTGAAGCTGTTAGATTTcatcaaacaaaacaaagataaac
GTTCCAGTAATTCTTTCCATAAATTGAGTAGAGCCACCCAACATACTGAC
ATGTGGAAACAAAGACAACTCAACCTATCTGTGCCATCGAAAATAGACGT
TAGTTATTCTTTTTTATACATTCTAACTTCACTATACCATACACCtcctc
acagacccactgggactccttcccactggaaaaattggcctaaATATCGT
CcctagtggaaaattatacactTAATTTGTATCCCAACTAAAAATAATCC
AATGAACTAATCCCCACTACTTATATCATGCTATTTTCTatcctcactga
attttctgacttaaaaacaatggaatttaaatccaCAGTCATAAAAGTAT
AGGAATATCGATCCCCAACgaatttcagtccgttatttttacccccactg
gctgaaaaaatcccacccccttctcacacacccgagaagggggtgtatca
tttAATACCGATTCTTCATATCTCACGGCTTAAAGAGCTCAAAGTATGAA
CTAATCATGAACTAACAGTGACTCCTTGCANGGATTCAGTGTTAGTTCAG
TTCAAGACTTTCTGATAGGCAATGACAAACCCAATGTCACTACCAATAAA
TAAATCTTACCTGATTAAACATGAACCTAATCAATGTTTTAACACTATTC
AGCTAGCATATTATCCAGTATTATCCAAAGCCCATTCTATTTTAGGTCAA
TGAAAAGATTTTCACAGCCCTACTTGAACCGTGCATATTTATGTTCTCAC
ACACCTTCGCCACCATGTTTGAAGCTGTTAGATTTcatcaaacaaaacaa
agataaacGTTCCAGTAATTCTTTCCATAAATTGAGTAGAGCCACCCAAC
ATACTGACATGTGGAAACAAAGACAACTCAACCTATCTGTGCCATCGAAA
ATAGACGTTAGTTATTCTTTTTTATACATTCTAACTTCACTATACCATAC
ACCtcctcacagacccactgggactccttcccactggaaaaattggccta
aATATCGTCcctagtggaaaattatacactTAATTTGTATCCCAACTAAA
AATAATCCAATGAACTAATCCCCACTACTTATATCATGCTATTTTCTatc
ctcactgaattttctgacttaaaaacaatggaatttaaatccaCAGTCAT
AAAAGTATAGGAATATCGATCCCCAACgaatttcagtccgttatttttac
ccccactggctgaaaaaatcccaccgggtgtgtgagaagggggtgtatca
tttAATACCGATTCTTCATATCTCACGGCTTAAAGAGCTCAAAGTATGAA
CTAATCGTGAACTAACAATGACTCCTTGCAAACAGTATTTGTCTATCATC
GTTAAAAGTTTCGATGGTGGTCGAAAGGAATAAGTTAtttgatatttcaa
ttttagtttaaaCCACGACTCTCATTTTACAAACTCTTTTAGGTAACCTC
ACATGCAAAACTGATGGAACTACCGAAATACACAACAGATTATACGCCAG
AGAAAATCCAAGAAATTATTTTGGAAGGCGAAAAGACCAACAACCGTTCT
TATTATTGTCGTGTTACCATCCAAAGACGTGGCTCAACAGGCGAATATAT
TGGCGATCTCTACCTAGAGGAAGACCATGGGAAAACGAAGGAAGATACGA
AGAAAGATGGGCGTGCATGCAGGTTTGTCTTTTTTGTTAATTACCTTAGA
GAGACTTGGACGGTGTTTAGAAAACACCCATGAGGACAGATAGTCTAGAA
TATGTCAACTCAAATGCTGTCTTGACTTCAAAAGTTATGGAAACCTTTAG
GATCGTTATTTGACCTGACAGATTTGTTTTATTTGTAGAATTTTTCCTGG
TACCTTAGGTTATGGAGTTCAATTCTATAGTTAGATCTATTTATCAAGCT
TTGTATCATTtggtttttatcattttattttacattcTTTTCGAAAGGTT
TTCTCTGGTCAACCGAATCACAGCGCAACGCTATTTACAACAGTTTCAAG
AACTCTACACAGAAGAAGGTCGGAAATCAgtcaaaatttcaacctttgTC
GCAAACCAAGCACAAcgaaatcaacaacaacaacagcaacaagcACAAAA
CAGTAACAACGCCTCACAACAAGCCAAAACACAAgcacaacaacagcaac
aacagaCTGCTCAGATCTTACAACAAGCTGCACACCAGGCTGCGACACAA
AAGATCATTGTTTCGTCAGTTCCGACATCCACGACACAAATGACAACCCA
TACCATCGTCAATCAGAATCGCACGTTCACTGTGGCTCAGAACCCAGTCA
TTTCACATGGTGGAAATACATACATTCTTGCAAGCTCGGCACTTCAACAA
TCACTTAACTTGGGATCCAATGTTGTACCAATGTCGTTATCAAGTTCGTT
TTTTGAGTTTTACTTAATATCTTTCTTGTGTCTCTACTAAGATTTTCTCA
TCTAAgattttctctatttttcgCTTCTAGAATAGTTCCTCTGTTCCACA
TCCAAAATCTTATACAACATAACCAGTAAACTCTCTTTTTTCTCTCTACA
TGAGTTTACATAACTCAAACGCCAAGTAAGGACAACCCAGTAACTCTTCG
AGTTGCAGAGTAAAAAATCAATACCTTAAGGGGTCAGAAAGAATGTTTCG
ACTACATTGAAATAATGTGCGAGTTATGAAGAGATGCTTTAACATTCAAT
TTAATTATTCAATCTTCTAGGGAATCCTTACATAGTAAATTCATCAGGAA
ACCTTCAACAAGCTGTATCAACCAAAACCAACCAATCGCCAAGCAAAATT
ATTGGAGCGTCTAATGAAAATGCACAGCTAACAACAGCTTACATCCAAGT
AACTTCTCATAAATTGATTCTTCCTTTTTTAATTCCAATTATCACCCAAG
GGTGTTTAATTTTGAGCACCATCTAGATTACTTCTGATTGACACGACCAT
TCTCAAACCGCTCAACTCGTAATACAAATGCTTGTTCAGTTAGCACTAAT
CATTTTCATACAACGATAAATATTGTTTTGCTTCAGTCTGTATCGGGTGC
AACGATAGGAGGAACTTCACATGGTCAACTAACGGCAGTTCCTATCGCAG
TACAAGGAAACAATGTCAGTTTGGTCCCTGGTAATCAGTTCATAGCAGCC
AAAGCATCTCCACAAACAATACGTCCAGCAGGTGCCACTGGGCAAATCAT
GCTGCAGGTACATgatcaaatcttttttgttggaataataatattttgca
aaaagtATCAAGTTATTGACTCTAGTTGGTCTAAGTTGTCTTTGCTCCAA
CTAATTTTATTTGGCATTTCTTTAATAGTGTGAATTGAGCTCTGGTTCTG
GTTTTCCTGGATATTAAATTGTATGTCATCCAATACcttacttatttttc
aaagtattgtaattttaaagcttaaaagtatttgttgtttttgtaaacTT
TCCAGGTACCAGGCAATCTTGTACCACTCTCTCAAATGACCAGAGTAGCT
GGTGGACCACAAAAGGGACAAATTCCTGGTGCTGGCATGGCTTCGGTTAT
GGTCCACGGGAAGCAAGTCATGGTTCAGGGAGGCGCCATGATACAGGGCC
AAGCTACCTTCATACCTAACCAAGCACCATTGATCCCAGGTCTTCAAGGT
GGTCAGACAGCCATCATTCAAGGTGGTTCCATCTTCGTGCAAGGTCAACC
AGGACAAACACAAGGACAAACTGTCATGATACAGGGACAGCCAGGTAACT
TCTTGACCTTTCTGTGCTCCTTTTTATTCAGATAAAtcgtaatttgaaat
ttgaaaactcTGTGATAAAATGGGATTTCTAGCATTACTTATTGAAATTA
TTTGATAAGCATAAGCAGTTACCATCTCTTCCTCGGCATATTTTTTTCTC
GTTGTTCATTTCAATATCCAACCCGTAGTAACTCGTTTCGAGCTGTATAA
TTTTGTTTGACTTAGGACAACATCAAACTGGTCAGAATACTTTGATCCAA
GGACAGGCACTGCAAGGTCAACCTGTATTCATCCAAGGTCAACCGAANGA
CCATTCTAAAACCGCTCAACTCGTAATACAAATGCTTGTTCAGTTAGCAC
TAATCATTTTCATACAACGATAAATATTGTTTTGCTTCAGTCTGTATCGG
GTGCAACGATAGGAGGAACTTCACATGGTCAACTAACGGCAGTTCCTATC
GCAGTACAAGGAAACAATGTCAGTTTGGTCCCTGGTAATCAGTTCATAGC
AGCCAAAGCATCTCCACAAACAATACGTCCAGCAGGTGCCACTGGGCAAA
TCATGCTGCAGGTACatcatcaaatcttttttgttggaataacaatattt
tgcaaaatgtaTCAAGTTATTGACTCTAGTTGGTCTAAGTTGTCTTTGTT
CCAACTGATTTTATTTGGCATTTCTTTAATACTGTGAATTGGGCTCTGGT
TCTGGTTTTCCTGGATATTAAATTGTATGTCATCCAATACcttacttatt
tttcaaagtattgtaattttaaagcttaaagctatttgttgtttttgtaa
acTTTTCCAGGTACCAGGCAATCTTGTACCACTCTCTCAAATGACCAGAG
TAGCTGGTGGACCACAAAAGGGACAAATTCCTGGTGCTGGCATGGCTTCA
GTTATGGTCCACGGGAAGCAAGTCATGGTTCAGGGAGGCGCCATGATACA
GGGCCAAGCTACCTTCATACCTAACCAAGCACCATTGATCCCAGGTCTTC
AAGGTGGTCAGACAGCCATCATTCAAGGTGGTTCCATCTTCGTGCAAGGT
CAACCAGGACAAACACAAGGACAAACTGTCATGATACAGGGACAGCCAGG
TAACTTCTTGACCTTTCTGTGCTCCTTTTTATTCAGATAAatcgtaattt
ttgaaatttgaaaactcTGTGATAAAATGGGATTTCTAGCATTACTTATT
GAAATTATTTGATAAGCATAAGCAGTTACCAACTCTTCCTCGGCATATTT
TTTTCTCGTTGTTCCAACCCGTAGTAACTCGTTTCGAGCTGTATAATTTT
GTTTGACTTAGGACAACATCAAACTGGTCAGAATACTTTGATCCAAGGAC
AAGCACTGCAAGGTCAACCTGTATTCATCCAAGGTCAACCGAATGGCCAA
ACGCAGGTAAGCTATTCAACATTTAAATAACAGTTGACAGTTTCAAATGA
TTAATATGGTGAAAATATTAGTAGCTATTTAGTACTCTACTTTTTAATGT
ATTTTATAAATattatttgctttttctcataagGTACACCATAATATACA
CTGGTAGCGTTTTTCCAATTTATTACCAACGAATTTCTTTTACTGTACAC
TTGTATGATAAAAAAGGCGTCGAGTAAGATATATACTTCGGTAATGTCAA
GACGAAGCTTCATTGCATATTGTTTGTGATTGTAGTTCATGACGAAATTA
TAGCCATTGTCGGAGTTCAATCACTATTCAAAGTATTTTTCACCCTTTCT
TCTTCCTCTACAGGTTGTTCAAGGTCAAGCAATCATGTTGCAGGGCAATC
AAGGTGGACACCAGGGCCAAGTTCAATTGATCACAACTTCAACATCAAGC
GGCGGCCAACAACTTCAAATCGTCCCTCAAATACAAAAACAAGGTATAAC
TCGCCCATTTTCATCTTTCTATAATAATAGTACCGGAGCTTtttgtattt
gtatttttttgtaatgaaactttatcaaatgcaaacttaaaatttacttt
taagATTTACAATATTAGACCCTGTTAGATTTTTTGCCCACGTCTGAAAG
ATCGTTGTAAAAGACCTTACAAAAACACTTATTATTCTTGATATTATTCT
TATTTCAGCAGTAATTACAAGTTCAGCTGGACGCACGCAATCATCTACCG
CTCTCTCTGCTTTAACATCACAAGTTAACTTGATCCCTATGCAACAGAGT
GGACAACAATATCAACCCATCGTTCAATTCACTACTTCCGCCCAACCCCG
CCCTGTTCAACAGAGGCGTAAAAGTGCTTCTCAACCCAACGCAGCGGGTG
GTGGGCGGAAGCGTGCCCCTGCACCTACTAAACCTTCTCCCCAATCACAG
TAAAACACCCCAAACCTTTTTCCATTTCACATCTGTATGATTCTCTTACC
TTTAATTCCGCCTAATTGATCTAGAAGTGTTCTGTTCTGAATGAACTACT
TTTGATATATCATCAATGGCAAAATGTCACTTTACTAGTCTTCTTGGATT
TAcgaagttttcaatttttaagtgCGGCATACATAGTCATAATAATGATT
TCAttgtgaaaacattttttctgttgcaGGTGTTGTATAGTTTAAGTTAC
AATCTCTTTTGTATATCACCAAATCTCTTCTGCTATAAACTACTTATTAT
TATGGACTGTATATACTTTTTTTAACTACTTTTGACACAAAATTGACAAC
ACATTTAAATGTTTCTTTAATAATCTTAggatattcaaaaatttttagaa
c
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034875XLOC_034875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055406-exon-scaffold_253-1491911889:682828..682888TCONS_00055406-exon-scaffold_253-1491911889:682828..682888Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1510915933:682828..682888TCONS_00055406-exon-scaffold_253-1510915933:682828..682888Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1575043694:682828..682888TCONS_00055406-exon-scaffold_253-1575043694:682828..682888Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1491911889:682991..683046TCONS_00055406-exon-scaffold_253-1491911889:682991..683046Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1510915933:682991..683046TCONS_00055406-exon-scaffold_253-1510915933:682991..683046Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1575043694:682991..683046TCONS_00055406-exon-scaffold_253-1575043694:682991..683046Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1491911889:683348..683414TCONS_00055406-exon-scaffold_253-1491911889:683348..683414Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1510915933:683348..683414TCONS_00055406-exon-scaffold_253-1510915933:683348..683414Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1575043694:683348..683414TCONS_00055406-exon-scaffold_253-1575043694:683348..683414Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1491911889:683657..683812TCONS_00055406-exon-scaffold_253-1491911889:683657..683812Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1510915933:683657..683812TCONS_00055406-exon-scaffold_253-1510915933:683657..683812Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1575043694:683657..683812TCONS_00055406-exon-scaffold_253-1575043694:683657..683812Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1491911889:686292..686366TCONS_00055406-exon-scaffold_253-1491911889:686292..686366Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1510915933:686292..686366TCONS_00055406-exon-scaffold_253-1510915933:686292..686366Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1575043694:686292..686366TCONS_00055406-exon-scaffold_253-1575043694:686292..686366Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1491911889:687052..687159TCONS_00055406-exon-scaffold_253-1491911889:687052..687159Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1510915933:687052..687159TCONS_00055406-exon-scaffold_253-1510915933:687052..687159Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1575043694:687052..687159TCONS_00055406-exon-scaffold_253-1575043694:687052..687159Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1491911889:687348..687538TCONS_00055406-exon-scaffold_253-1491911889:687348..687538Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1510915933:687348..687538TCONS_00055406-exon-scaffold_253-1510915933:687348..687538Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1575043694:687348..687538TCONS_00055406-exon-scaffold_253-1575043694:687348..687538Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1491911889:687715..687925TCONS_00055406-exon-scaffold_253-1491911889:687715..687925Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1510915933:687715..687925TCONS_00055406-exon-scaffold_253-1510915933:687715..687925Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1575043694:687715..687925TCONS_00055406-exon-scaffold_253-1575043694:687715..687925Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1491911889:689270..689499TCONS_00055406-exon-scaffold_253-1491911889:689270..689499Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1510915933:689270..689499TCONS_00055406-exon-scaffold_253-1510915933:689270..689499Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1575043694:689270..689499TCONS_00055406-exon-scaffold_253-1575043694:689270..689499Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1491911889:689775..690220TCONS_00055406-exon-scaffold_253-1491911889:689775..690220Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1510915933:689775..690220TCONS_00055406-exon-scaffold_253-1510915933:689775..690220Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1575043694:689775..690220TCONS_00055406-exon-scaffold_253-1575043694:689775..690220Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1491911889:690548..690675TCONS_00055406-exon-scaffold_253-1491911889:690548..690675Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1510915933:690548..690675TCONS_00055406-exon-scaffold_253-1510915933:690548..690675Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1575043694:690548..690675TCONS_00055406-exon-scaffold_253-1575043694:690548..690675Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1491911889:690864..691034TCONS_00055406-exon-scaffold_253-1491911889:690864..691034Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1510915933:690864..691034TCONS_00055406-exon-scaffold_253-1510915933:690864..691034Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1575043694:690864..691034TCONS_00055406-exon-scaffold_253-1575043694:690864..691034Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1491911889:692388..692676TCONS_00055406-exon-scaffold_253-1491911889:692388..692676Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1510915933:692388..692676TCONS_00055406-exon-scaffold_253-1510915933:692388..692676Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1575043694:692388..692676TCONS_00055406-exon-scaffold_253-1575043694:692388..692676Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1491911889:692889..692983TCONS_00055406-exon-scaffold_253-1491911889:692889..692983Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1510915933:692889..692983TCONS_00055406-exon-scaffold_253-1510915933:692889..692983Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1575043694:692889..692983TCONS_00055406-exon-scaffold_253-1575043694:692889..692983Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1491911889:693341..693470TCONS_00055406-exon-scaffold_253-1491911889:693341..693470Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1510915933:693341..693470TCONS_00055406-exon-scaffold_253-1510915933:693341..693470Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1575043694:693341..693470TCONS_00055406-exon-scaffold_253-1575043694:693341..693470Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1491911889:693686..694328TCONS_00055406-exon-scaffold_253-1491911889:693686..694328Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1510915933:693686..694328TCONS_00055406-exon-scaffold_253-1510915933:693686..694328Clytia hemisphaericaexon
TCONS_00055406-exon-scaffold_253-1575043694:693686..694328TCONS_00055406-exon-scaffold_253-1575043694:693686..694328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:682828..694328 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	5.46819e-05	7.70237e-05	0.0116558	5.29168e-05	0.000162494	0.0020079	8.58177e-08	0.00300135	0.000650197	0.0371892	0.000377557	0.000336881	0.0170631	2.62997e-05	0.548796	5.2843e-10	0	0	2.89379e-10	7.92437e-07	1.96909e-06	4.49529e-07	1.19921e-06	4.60612e-10	1.72848e-07	4.94674e-09
Blast
[Close]
BLAST of TCONS_00055406 vs. Swiss-Prot (Human)
Match: SP20H (Transcription factor SPT20 homolog OS=Homo sapiens GN=SUPT20H PE=1 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 1.671e-80
Identity = 155/393 (39.44%), Postives = 244/393 (62.09%), Query Frame = 2 
Query:  116 KKSLFERLLNAYVEEKKQQQEKGDFNKESMLLQKIVKEDDLGVLIVNLYPGSDGYSLMLKKKDGSDVETYKLPYEESEFLDYLDTQELPPLLVDVLESAQVDLFYDGCVIVELRDYRRST---QKNFDTTYILLKPTSQTIVRDVNSLMSD-PKWSNEDKAKLESQLVLAMQPRLCLDPSPKVLYTANKIQHHANKWNHKGLRRSMKRFSQPYLNRAYLCSHTPSPPCLKLLDFIKQNKDKRSSNSFH-KLSRATQHTDMWKQRQLNLSVPSKIDVTSHAKLMELPKYTTDYTP------EKIQEIILEGEKTNNRSYYCRVTIQRRGSTGEYIGDLYL-----EEDHGKTKEDTKKDGRACRFSLVNRITAQRYLQQFQELYTEEGRKSVKI 1246
            +KS+F++L + Y+EE +++ E     +   LL+K+V ++ L  L+VNLYPG++GYSLML+ K+GSD ET +LPYEE E L+YLD +ELPP+LVD+LE +QV++F+ GCVI E+RDYR+S+      + + +ILL+PT QT++ DV+S+ SD  KW+ EDK  LESQL+LA    LCLDPS  V  TAN++ ++  K N + ++R  KR+S+  LNR    SH P PP L+LLDF+++ K++++   +  K+S+A    DMWK+   NL++PS++DV  +AK+ +  K + D  P      +   + + E E    +    ++TI +      Y G +       E D   +   +  D  +  F + ++  A+R + Q+QEL   E +  VK+
Sbjct:   33 RKSVFQKLYDLYIEECEKEPEVKKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAIPSEVDVEKYAKVEKSIK-SDDSQPTVWPAHDVKDDYVFECE-AGTQYQKTKLTILQSLGDPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCPVKM 423
The following BLAST results are available for this feature:
BLAST of TCONS_00055406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SP20H1.671e-8039.44Transcription factor SPT20 homolog OS=Homo sapiens... [more]
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