TCONS_00055393 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055393
Unique NameTCONS_00055393
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2973

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055393 ID=TCONS_00055393|Name=TCONS_00055393|organism=Clytia hemisphaerica|type=transcript|length=2973bp
aaaatgttatcaACAGTTGATGCACTTGGATCTTCTGAAATCACTATTTG
AGCGACTTCTCAATGCTTATGTGGAGGAGAAGAAGCAACAACAAGAAAAA
GGGGATTTCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGAAGA
CGACCTTGGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGATATT
CACTGatgttgaaaaagaaagatgGAAGTGATGTGGAGACGTATAAACTC
CCCTATGAGGAAAGTGAATTCTTAGATTACTTGGATACACAAGAACTACC
TCCTCTCCTTGTGGATGTTTTGGAGAGTGCTCAGGTTGATCTATTCTATG
ATGGTTGTGTCATTGTGGAGTTACGTGATTACAGACGAAGTACTCAGAAA
AACTTTGATACCACTTACATTTTATTAAAACCAACCTCACAGACCATTGT
TCGTGATGTAAACTCATTGATGTCAGACCCGAAATGGAGTAACGAAGACA
AGGCCAAACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTGTGT
TTAGATCCTTCACCAAAGGTTCTTTACACTGCCAACAAAATACAACACCA
TGCCAATAAATGGAATCATAAAGGTTTACGAAGGTCAATGAAAAGATTTT
CACAGCCCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCA
CCATGTTTGAAGCTGTTAGATTTcatcaaacaaaacaaagataaacGTTC
CAGTAATTCTTTCCATAAATTGAGTAGAGCCACCCAACATACTGACATGT
GGAAACAAAGACAACTCAACCTATCTGTGCCATCGAAAATAGACGTAACC
TCACATGCAAAACTGATGGAACTACCGAAATACACAACAGATTATACGCC
AGAGAAAATCCAAGAAATTATTTTGGAAGGCGAAAAGACCAACAACCGTT
CTTATTATTGTCGTGTTACCATCCAAAGACGTGGCTCAACAGGCGAATAT
ATTGGCGATCTCTACCTAGAGGAAGACCATGGGAAAACGAAGGAAGATAC
GAAGAAAGATGGGCGTGCATGCAGGTTTTCTCTGGTCAACCGAATCACAG
CGCAACGCTATTTACAACAGTTTCAAGAACTCTACACAGAAGAAGGTCGG
AAATCAgtcaaaatttcaacctttgTCGCAAACCAAGCACAAcgaaatca
acaacaacaacagcaacaagcACAAAACAGTAACAACGCCTCACAACAAG
CCAAAACACAAgcacaacaacagcaacaacagaCTGCTCAGATCTTACAA
CAAGCTGCACACCAGGCTGCGACACAAAAGATCATTGTTTCGTCAGTTCC
GACATCCACGACACAAATGACAACCCATACCATCGTCAATCAGAATCGCA
CGTTCACTGTGGCTCAGAACCCAGTCATTTCACATGGTGGAAATACATAC
ATTCTTGCAAGCTCGGCACTTCAACAATCACTTAACTTGGGATCCAATGT
TGTACCAATGTCGTTATCAAGGAATCCTTACATAGTAAATTCATCAGGAA
ACCTTCAACAAGCTGTATCAACCAAAACCAACCAATCGCCAAGCAAAATT
ATTGGAGCGTCTAATGAAAATGCACAGCTAACAACAGCTTACATCCAATC
TGTATCGGGTGCAACGATAGGAGGAACTTCACATGGTCAACTAACGGCAG
TTCCTATCGCAGTACAAGGAAACAATGTCAGTTTGGTCCCTGGTAATCAG
TTCATAGCAGCCAAAGCATCTCCACAAACAATACGTCCAGCAGGTGCCAC
TGGGCAAATCATGCTGCAGGTACCAGGCAATCTTGTACCACTCTCTCAAA
TGACCAGAGTAGCTGGTGGACCACAAAAGGGACAAATTCCTGGTGCTGGC
ATGGCTTCAGTTATGGTCCACGGGAAGCAAGTCATGGTTCAGGGAGGCGC
CATGATACAGGGCCAAGCTACCTTCATACCTAACCAAGCACCATTGATCC
CAGGTCTTCAAGGTGGTCAGACAGCCATCATTCAAGGTGGTTCCATCTTC
GTGCAAGGTCAACCAGGACAAACACAAGGACAAACTGTCATGATACAGGG
ACAGCCAGGACAACATCAAACTGGTCAGAATACTTTGATCCAAGGACAAG
CACTGCAAGGTCAACCTGTATTCATCCAAGGTCAACCGAATGGCCAAACG
CAGGTTGTTCAAGGTCAAGCAATCATGTTGCAGGGCAATCAAGGTGGACA
CCAGGGCCAAGTTCAATTGATCACAACTTCAACATCAAGCGGCGGCCAAC
AACTTCAAATCGTCCCTCAAATACAAAAACAAGTAATTACAAGTTCAGCT
GGACGCACGCAATCATCTACCGCTCTCTCTGCTTTAACATCACAAGTTAA
CTTGATCCCTATGCAACAGAGTGGACAACAATATCAACCCATCGTTCAAT
TCACTACTTCCGCCCAACCCCGCCCTGTTCAACAGAGGCGTAAAAGTGCT
TCTCAACCCAACGCAGCGGGTGGTGGGCGGAAGCGTGCCCCTGCACCTAC
TAAACCTTCTCCCCAATCACAGTAAAACACCCCAAACCTTTTTCCATTTC
ACATCTGTATGATTCTCTTACCTTTAATTCCGCCTAATTGATCTAGAAGT
GTTCTGTTCTGAATGAACTACTTTTGATATATCATCAATGGCAAAATGTC
ACTTTACTAGTCTTCTTGGATTTAcgaagttttcaatttttaagtgCGGC
ATACATAGTCATAATAATGATTTCAttgtgaaaacattttttctgttgca
GGTGTTGTATAGTTTAAGTTACAATCTCTTTTGTATATCACCAAATCTCT
TCTGCTATAAACTACTTATTATTATGGACTGTATATACTTTTTTTAACTA
CTTTTGACACAAAATTGACAACACATTTAAATGTTTCTTTAATAATCTTA
ggatattcaaaaatttttagaac
Run BLAST on NCBI

transcript from alignment at scaffold_253:682242..694328+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055393 ID=TCONS_00055393|Name=TCONS_00055393|organism=Clytia hemisphaerica|type=transcript|length=12087bp|location=Sequence derived from alignment at scaffold_253:682242..694328+ (Clytia hemisphaerica)
aaaatgttatcaACAGTTGATGCACTTGGATCTTCTGTAAGTCTATTTAC
TACAGTATGATAAAACTTAGAAAGTTTCTGATTTTAATCATTAATTCTCT
TTTTCCCTAATAATAACAATTACGGGTTTTCAATTTAGGATCCATTCAAT
ATGATGGTGAAAGATAtgccagattttgaaaaacctNTGTGCTGTATAAC
GACATTATAATTTCCTTAAAGCTTTTTTGTATGAAACTTTGACTCTTCGC
TCCACGAAAGCTTTAACCTTCAAAATTGAAGTAATTTACTCAAAAAAGAA
TCCTATTTCTAGAAAATACAGTTTATTTtgtaatatatataatatagtGG
TAGTATACGATAGCAATAATATTGTGATAATTGTAATGATTTCTATTATA
taagtttttatttatgatatttAGTAATCCCAACTTTAGTTTAATATTAT
CTtatgatttttcagaaatacatttttcaaaatttttttttgtaacctAA
AGTTGATTCTTCAGCTAGTTTCTTTGTCAATAAAAGTCGTAAACTAACCG
TCTTGTATTTCATCTTAGAATCTGATAGAATACAATAATGacaatataaa
ataaacaaataaaaatgttatcaACAGTTGATGCACTTGGATCTTCTGTA
AGTCTATTTACTACAGTATGATAAAACTTAGAAAGTTTCTGATTTTAATC
ATTAATTCTCTTTTTCCCTAATAATAACAATTACGGGTTTTCAATTTAGG
ATCCATTCAATATGATGGTGAAAGATAtgccagattttgaaaaacctgCC
TTGAAGTGAGTATAataacataaaaaaatattttgattgtgTTATTAACT
ATGCTACAAATACAAGGTGTTGTGAATTTATTTGCTGTATTTTGAAACCT
CTGttagaaagaaaaaatcagtcccatttattgactttttaaaattttta
tacaaatttgatTTAGTGGAGTGCTGAATAAGTTTTTTGAGAGAAATAAA
TTTGGGAGATGGTtgggaaaaagatttttgatgggaattcattttggcaa
tttttggtcaaaaatctTCATTAGATATTCTCATTAAAATCACATTATTC
ATATAGGAAATCACTATTTGAGCGACTTCTCAATGCTTATGTGGAGGAGA
AGAAGCAACAACAAGAAAAAGGGGTAAACTAGCAATTAAAATAAGCTTTT
TTTTCTCCATAGTATATGGGTTGATATCAAAATATCCCATCATGTTTTAT
TCCACCATGGTATGTGATATAGTGTTATAAGCTTATTAAAGTTTATAAGA
ATGAAAGTGCACTTTTTccaatctttttgaaatatgataaacAATAGATA
TTACATTGAACAACTACTGAAATTCAGTATGAAATAATATTGAaacactt
ttatttttccttaaGGATTTCAACAAGGAGTCCATGCTTCTTCAAAAGAT
AGTCAAGGAAGACGACCTTGGTGTTCTGATTGTCAATCTGTATCCTGGTA
GTGATGGATATTCACTGatgttgaaaaagaaagatgGAAGTGATGTGGAG
ACGTATAAACTCCCCTATGAGGTAATTTGTATTAGGTAATTACATAGTCT
TTAAGGGGTAGAACATTATGACATATCTGTAAAATCCTAATTTAGTGAGG
TTTTGCTAAATATGAGAGGATACTTAGATCCATGTGACATTATTTTGCTA
ATGAAATTACTTGAAACTGAAGAGGATAAAGCCTGAGTCATTATTATTGT
TTACATTGAAATgagtgaaaaatataaaaatacttcTGGTTTTGAAATCA
TCATGTCAATCATTGATTTGTTTCCTGATTATTATTTACCTTTATAGGAA
AGTGAATTCTTAGATTACTTGGATACACAAGAACTACCTCCTCTCCTTGT
GGATGTTTTGGAGAGTGCTCAGGTTTGTAGGTCCATCACAACAACATACT
TAACGAAGTTGGAATCGTACATAATGTCAGCTTTGTCAAGCAGAATCCTC
TCAAATTTTAGATGATCgtgctattcatgatattataccaccctaaATAT
TTTCCCAAACAAAGGGTATTGGTTTTCAAATattagaagctgaaaaccca
cttttCTTGGTATTTTGTACCTTCCCTACAATTTCATGCACCTCGCTTTT
AAAGAATAAGCTCTAGtctagacggccgactttctgtcctgcctattcta
attgttagtgTAGGCAGAAAGCGTAcacaaagttggcagttaaaatcttt
gcttggaaaagattgaaagaagtcattgcgttgacgtcaaaaaagggcaa
tgcattgactttagacagcccactttattaagcccactttaattcacaat
tagaataggcagggcgaaaagtgggccgtctaaactagagctaacaTCCA
CCTGTTTGttattcttttgaaaagaattagAAATTAGAAATGTTAAAGAG
ACTGAAATCCTATCAccaaatttttgcttttcaACTGCCTTCAGAACTCt
cattttttcattgtttattactttttgataaaattttatacTACAGAAAA
TTAAATATATCCCTATGTAACGATGTTAAGAAATTCTTTGTTTTCCATGA
ATAGGTTGATCTATTCTATGATGGCTGTGTCATTGTGGAGTTACGTGATT
ACAGAAGAAGTACTCAGAAAAACTTTGATACCACCTACATTTTATTAAAA
CCAACCTCACAGGTAAGCAGTATTTTGTTTAAAGTTGTATTTATTTCTCT
TCAGGAACAAACTCCTTTTAATACACATTTGTTCTCTTACTTGGttgtag
attttattttcattgaagCATTTTCCAACTGATTTTGGTCATAAGAGTAC
TGTACTATGTTTAGTGTAAACTACCTATATCTAATATATTTGTCTCTCTG
AAATCTTTGTAGACCATTGTTCGTGATGTAAACTCATTGATGTCAGACCC
GAAATGGAGTAACGAAGACAAGGCCAAACTAGAATCTCAATTAGTTTTAG
CTATGCAACCAAGACTGTGTTTAGATCCTTCACCAAAGGTTCTTTACACT
GCCAACAAAATACAACACCATGCCAATAAATGGAATCATAAAGGTTTACG
AAGGTAAACACCAATGGATTCAGTGTTAGTTCAGTTCAAGACTTTCTGAT
AGGCAATGACAAACCCAATGTCACTACCAATAAATAAATCTTACCTGATT
AAACATGAACCTAATCAATGTTTTAACACTATTCAGCTAGCATATTATCC
AGTATTATCCAAAGCCCATTCTATTTTAGGTCAATGAAAAGATTTTCACA
GCCCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCACCAT
GTTTGAAGCTGTTAGATTTCATCAAACAAAACAAANgaaaaatataaaaa
tacttcTGGTTTTGAAATCATCATGTCAATCATTGATTTGTTTCCTGATT
ATTATTTACCTTTATAGGAAAGTGAATTCTTAGATTANTTAAAGTTTATA
AGAATGAAAGTGCACTTTTTccaatctttttgaaatatgataaacAATAG
ATATTACATTGAACAACTACTGAAATTCAGTATGAAATAATATTGAaaca
cttttatttttccttaaGGATTTCAACAAGGAGTCCATGCTTCTTCAAAA
GATAGTCAAGGAAGACGACCTTGGTGTTCTGATTGTCAATCTGTATCCTG
GTAGTGATGGATATTCACTGatgttgaaaaagaaagatgGAAGTGATGTG
GAGACGTATAAACTCCCCTATGAGGTAATTTGTATTAGGTAATTACATAG
TCTTTAAGGGGTAGAACATTATGACATATCTGTAAAATCCTAATTTAGTG
AGGTTTTGCTAAATATGAGAGGATACTTAGATCCATGTGACATTATTTTG
CTAATGAAATTACTTGAAACTGAAGAGGATAAAGCCTGAGTCATTATTAT
TGTTTACATTGAAATgagtgaaaaatataaaaatacttcTGGTTTTGAAA
TCATCATGTCAATCATTGATTTGTTTCCTGATTATTATTTACCTTTATAG
GAAAGTGAATTCTTAGATTACTTGGATACACAAGAACTACCTCCTCTCCT
TGTGGATGTTTTGGAGAGTGCTCAGGTTTGTAGGTCCATCACAACAACAT
ACTTAACGAAGTTGGAATCGTACATAATGTCAGCTTTGTCAAGCAGAATC
CTCTCAAATTTTAGATGATCgtgctattcatgatattataccaccctaaA
TATTTTCCCAAACAAAGGGTATTGGTTTTCAAATattagaagctgaaaac
ccacttttCTTGGTATTTTGTACCTTCCCTACAATTTCATGCACCTCGCT
TTTAAAGAATAAGCTCTAGtctagacggccgactttctgtcctgcctatt
ctaattgttagtgTAGGCAGAAAGCGTAcacaaagttggcagttaaaatc
tttgcttggaaaagattgaaagaagtcattgcgttgacgtcaaaaaaggg
caatgcattgactttagacagcccactttattaagcccactttaattcac
aattagaataggcagggcgaaaagtgggccgtctaaactagagctaacaT
CCACCTGTTTGttattcttttgaaaagaattagAAATTAGAAATGTTAAA
GAGACTGAAATCCTATCACCAAATTTTGCTTTTCAACTGCCTTCAGAACT
CtcattttttcattgtttattactttttgataaGATTTTATACTACAGAA
AATTAAATATATTCCTATGTAACGATCGATGTTAAGAAATTCTTTGTTTT
CCATGAATAGGTTGATCTATTCTATGATGGTTGTGTCATTGTGGAGTTAC
GTGATTACAGACGAAGTACTCAGAAAAACTTTGATACCACTTACATTTTA
TTAAAACCAACCTCACAGGTAAGCAGTGTTGTGTTTATTTCTCTTCAGGA
ACAAACTCCTTTTAATACACATTTGTTCTCTTACTTGGttgtagatttta
ttttcattgaagCATTTTCCAACTGATTTTGGTCATAAGAGTACTGTACT
ATGTTTAGTGTAAACTACCTATATCTAATATATTTGTCTCTCTGAAATCT
TTGTAGACCATTGTTCGTGATGTAAACTCATTGATGTCAGACCCGAAATG
GAGTAACGAAGACAAGGCCAAACTAGAATCTCAATTAGTTTTAGCTATGC
AACCAAGACTGTGTTTAGATCCTTCACCAAAGGTTCTTTACACTGCCAAC
AAAATACAACACCATGCCAATAAATGGAATCATAAAGGTTTACGAAGGTA
AACACCAATGGATTCAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAA
TGACAAACCCAATGTCACTACCAATAAATAAATCTTACCTGATTAAACAT
GAACCTAATCAATGTTTTAACACTATTCAGCTAGCATATTATCCAGTATT
ATCCAAAGCCCATTCTATTTTAGGTCAATGAAAAGATTTTCACAGCCCTA
CTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCACCATGTTTGA
AGCTGTTAGATTTcatcaaacaaaacaaagataaacGTTCCAGTAATTCT
TTCCATAAATTGAGTAGAGCCACCCAACATACTGACATGTGGAAACAAAG
ACAACTCAACCTATCTGTGCCATCGAAAATAGACGTTAGTTATTCTTTTT
TATACATTCTAACTTCACTATACCATACACCtcctcacagacccactggg
actccttcccactggaaaaattggcctaaATATCGTCcctagtggaaaat
tatacactTAATTTGTATCCCAACTAAAAATAATCCAATGAACTAATCCC
CACTACTTATATCATGCTATTTTCTatcctcactgaattttctgacttaa
aaacaatggaatttaaatccaCAGTCATAAAAGTATAGGAATATCGATCC
CCAACgaatttcagtccgttatttttacccccactggctgaaaaaatccc
acccccttctcacacacccgagaagggggtgtatcatttAATACCGATTC
TTCATATCTCACGGCTTAAAGAGCTCAAAGTATGAACTAATCATGAACTA
ACAGTGACTCCTTGCANGGATTCAGTGTTAGTTCAGTTCAAGACTTTCTG
ATAGGCAATGACAAACCCAATGTCACTACCAATAAATAAATCTTACCTGA
TTAAACATGAACCTAATCAATGTTTTAACACTATTCAGCTAGCATATTAT
CCAGTATTATCCAAAGCCCATTCTATTTTAGGTCAATGAAAAGATTTTCA
CAGCCCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCACC
ATGTTTGAAGCTGTTAGATTTcatcaaacaaaacaaagataaacGTTCCA
GTAATTCTTTCCATAAATTGAGTAGAGCCACCCAACATACTGACATGTGG
AAACAAAGACAACTCAACCTATCTGTGCCATCGAAAATAGACGTTAGTTA
TTCTTTTTTATACATTCTAACTTCACTATACCATACACCtcctcacagac
ccactgggactccttcccactggaaaaattggcctaaATATCGTCcctag
tggaaaattatacactTAATTTGTATCCCAACTAAAAATAATCCAATGAA
CTAATCCCCACTACTTATATCATGCTATTTTCTatcctcactgaattttc
tgacttaaaaacaatggaatttaaatccaCAGTCATAAAAGTATAGGAAT
ATCGATCCCCAACgaatttcagtccgttatttttacccccactggctgaa
aaaatcccaccgggtgtgtgagaagggggtgtatcatttAATACCGATTC
TTCATATCTCACGGCTTAAAGAGCTCAAAGTATGAACTAATCGTGAACTA
ACAATGACTCCTTGCAAACAGTATTTGTCTATCATCGTTAAAAGTTTCGA
TGGTGGTCGAAAGGAATAAGTTAtttgatatttcaattttagtttaaaCC
ACGACTCTCATTTTACAAACTCTTTTAGGTAACCTCACATGCAAAACTGA
TGGAACTACCGAAATACACAACAGATTATACGCCAGAGAAAATCCAAGAA
ATTATTTTGGAAGGCGAAAAGACCAACAACCGTTCTTATTATTGTCGTGT
TACCATCCAAAGACGTGGCTCAACAGGCGAATATATTGGCGATCTCTACC
TAGAGGAAGACCATGGGAAAACGAAGGAAGATACGAAGAAAGATGGGCGT
GCATGCAGGTTTGTCTTTTTTGTTAATTACCTTAGAGAGACTTGGACGGT
GTTTAGAAAACACCCATGAGGACAGATAGTCTAGAATATGTCAACTCAAA
TGCTGTCTTGACTTCAAAAGTTATGGAAACCTTTAGGATCGTTATTTGAC
CTGACAGATTTGTTTTATTTGTAGAATTTTTCCTGGTACCTTAGGTTATG
GAGTTCAATTCTATAGTTAGATCTATTTATCAAGCTTTGTATCATTtggt
ttttatcattttattttacattcTTTTCGAAAGGTTTTCTCTGGTCAACC
GAATCACAGCGCAACGCTATTTACAACAGTTTCAAGAACTCTACACAGAA
GAAGGTCGGAAATCAgtcaaaatttcaacctttgTCGCAAACCAAGCACA
AcgaaatcaacaacaacaacagcaacaagcACAAAACAGTAACAACGCCT
CACAACAAGCCAAAACACAAgcacaacaacagcaacaacagaCTGCTCAG
ATCTTACAACAAGCTGCACACCAGGCTGCGACACAAAAGATCATTGTTTC
GTCAGTTCCGACATCCACGACACAAATGACAACCCATACCATCGTCAATC
AGAATCGCACGTTCACTGTGGCTCAGAACCCAGTCATTTCACATGGTGGA
AATACATACATTCTTGCAAGCTCGGCACTTCAACAATCACTTAACTTGGG
ATCCAATGTTGTACCAATGTCGTTATCAAGTTCGTTTTTTGAGTTTTACT
TAATATCTTTCTTGTGTCTCTACTAAGATTTTCTCATCTAAgattttctc
tatttttcgCTTCTAGAATAGTTCCTCTGTTCCACATCCAAAATCTTATA
CAACATAACCAGTAAACTCTCTTTTTTCTCTCTACATGAGTTTACATAAC
TCAAACGCCAAGTAAGGACAACCCAGTAACTCTTCGAGTTGCAGAGTAAA
AAATCAATACCTTAAGGGGTCAGAAAGAATGTTTCGACTACATTGAAATA
ATGTGCGAGTTATGAAGAGATGCTTTAACATTCAATTTAATTATTCAATC
TTCTAGGGAATCCTTACATAGTAAATTCATCAGGAAACCTTCAACAAGCT
GTATCAACCAAAACCAACCAATCGCCAAGCAAAATTATTGGAGCGTCTAA
TGAAAATGCACAGCTAACAACAGCTTACATCCAAGTAACTTCTCATAAAT
TGATTCTTCCTTTTTTAATTCCAATTATCACCCAAGGGTGTTTAATTTTG
AGCACCATCTAGATTACTTCTGATTGACACGACCATTCTCAAACCGCTCA
ACTCGTAATACAAATGCTTGTTCAGTTAGCACTAATCATTTTCATACAAC
GATAAATATTGTTTTGCTTCAGTCTGTATCGGGTGCAACGATAGGAGGAA
CTTCACATGGTCAACTAACGGCAGTTCCTATCGCAGTACAAGGAAACAAT
GTCAGTTTGGTCCCTGGTAATCAGTTCATAGCAGCCAAAGCATCTCCACA
AACAATACGTCCAGCAGGTGCCACTGGGCAAATCATGCTGCAGGTACATg
atcaaatcttttttgttggaataataatattttgcaaaaagtATCAAGTT
ATTGACTCTAGTTGGTCTAAGTTGTCTTTGCTCCAACTAATTTTATTTGG
CATTTCTTTAATAGTGTGAATTGAGCTCTGGTTCTGGTTTTCCTGGATAT
TAAATTGTATGTCATCCAATACcttacttatttttcaaagtattgtaatt
ttaaagcttaaaagtatttgttgtttttgtaaacTTTCCAGGTACCAGGC
AATCTTGTACCACTCTCTCAAATGACCAGAGTAGCTGGTGGACCACAAAA
GGGACAAATTCCTGGTGCTGGCATGGCTTCGGTTATGGTCCACGGGAAGC
AAGTCATGGTTCAGGGAGGCGCCATGATACAGGGCCAAGCTACCTTCATA
CCTAACCAAGCACCATTGATCCCAGGTCTTCAAGGTGGTCAGACAGCCAT
CATTCAAGGTGGTTCCATCTTCGTGCAAGGTCAACCAGGACAAACACAAG
GACAAACTGTCATGATACAGGGACAGCCAGGTAACTTCTTGACCTTTCTG
TGCTCCTTTTTATTCAGATAAAtcgtaatttgaaatttgaaaactcTGTG
ATAAAATGGGATTTCTAGCATTACTTATTGAAATTATTTGATAAGCATAA
GCAGTTACCATCTCTTCCTCGGCATATTTTTTTCTCGTTGTTCATTTCAA
TATCCAACCCGTAGTAACTCGTTTCGAGCTGTATAATTTTGTTTGACTTA
GGACAACATCAAACTGGTCAGAATACTTTGATCCAAGGACAGGCACTGCA
AGGTCAACCTGTATTCATCCAAGGTCAACCGAANGACCATTCTAAAACCG
CTCAACTCGTAATACAAATGCTTGTTCAGTTAGCACTAATCATTTTCATA
CAACGATAAATATTGTTTTGCTTCAGTCTGTATCGGGTGCAACGATAGGA
GGAACTTCACATGGTCAACTAACGGCAGTTCCTATCGCAGTACAAGGAAA
CAATGTCAGTTTGGTCCCTGGTAATCAGTTCATAGCAGCCAAAGCATCTC
CACAAACAATACGTCCAGCAGGTGCCACTGGGCAAATCATGCTGCAGGTA
CatcatcaaatcttttttgttggaataacaatattttgcaaaatgtaTCA
AGTTATTGACTCTAGTTGGTCTAAGTTGTCTTTGTTCCAACTGATTTTAT
TTGGCATTTCTTTAATACTGTGAATTGGGCTCTGGTTCTGGTTTTCCTGG
ATATTAAATTGTATGTCATCCAATACcttacttatttttcaaagtattgt
aattttaaagcttaaagctatttgttgtttttgtaaacTTTTCCAGGTAC
CAGGCAATCTTGTACCACTCTCTCAAATGACCAGAGTAGCTGGTGGACCA
CAAAAGGGACAAATTCCTGGTGCTGGCATGGCTTCAGTTATGGTCCACGG
GAAGCAAGTCATGGTTCAGGGAGGCGCCATGATACAGGGCCAAGCTACCT
TCATACCTAACCAAGCACCATTGATCCCAGGTCTTCAAGGTGGTCAGACA
GCCATCATTCAAGGTGGTTCCATCTTCGTGCAAGGTCAACCAGGACAAAC
ACAAGGACAAACTGTCATGATACAGGGACAGCCAGGTAACTTCTTGACCT
TTCTGTGCTCCTTTTTATTCAGATAAatcgtaatttttgaaatttgaaaa
ctcTGTGATAAAATGGGATTTCTAGCATTACTTATTGAAATTATTTGATA
AGCATAAGCAGTTACCAACTCTTCCTCGGCATATTTTTTTCTCGTTGTTC
CAACCCGTAGTAACTCGTTTCGAGCTGTATAATTTTGTTTGACTTAGGAC
AACATCAAACTGGTCAGAATACTTTGATCCAAGGACAAGCACTGCAAGGT
CAACCTGTATTCATCCAAGGTCAACCGAATGGCCAAACGCAGGTAAGCTA
TTCAACATTTAAATAACAGTTGACAGTTTCAAATGATTAATATGGTGAAA
ATATTAGTAGCTATTTAGTACTCTACTTTTTAATGTATTTTATAAATatt
atttgctttttctcataagGTACACCATAATATACACTGGTAGCGTTTTT
CCAATTTATTACCAACGAATTTCTTTTACTGTACACTTGTATGATAAAAA
AGGCGTCGAGTAAGATATATACTTCGGTAATGTCAAGACGAAGCTTCATT
GCATATTGTTTGTGATTGTAGTTCATGACGAAATTATAGCCATTGTCGGA
GTTCAATCACTATTCAAAGTATTTTTCACCCTTTCTTCTTCCTCTACAGG
TTGTTCAAGGTCAAGCAATCATGTTGCAGGGCAATCAAGGTGGACACCAG
GGCCAAGTTCAATTGATCACAACTTCAACATCAAGCGGCGGCCAACAACT
TCAAATCGTCCCTCAAATACAAAAACAAGGTATAACTCGCCCATTTTCAT
CTTTCTATAATAATAGTACCGGAGCTTtttgtatttgtatttttttgtaa
tgaaactttatcaaatgcaaacttaaaatttacttttaagATTTACAATA
TTAGACCCTGTTAGATTTTTTGCCCACGTCTGAAAGATCGTTGTAAAAGA
CCTTACAAAAACACTTATTATTCTTGATATTATTCTTATTTCAGCAGTAA
TTACAAGTTCAGCTGGACGCACGCAATCATCTACCGCTCTCTCTGCTTTA
ACATCACAAGTTAACTTGATCCCTATGCAACAGAGTGGACAACAATATCA
ACCCATCGTTCAATTCACTACTTCCGCCCAACCCCGCCCTGTTCAACAGA
GGCGTAAAAGTGCTTCTCAACCCAACGCAGCGGGTGGTGGGCGGAAGCGT
GCCCCTGCACCTACTAAACCTTCTCCCCAATCACAGTAAAACACCCCAAA
CCTTTTTCCATTTCACATCTGTATGATTCTCTTACCTTTAATTCCGCCTA
ATTGATCTAGAAGTGTTCTGTTCTGAATGAACTACTTTTGATATATCATC
AATGGCAAAATGTCACTTTACTAGTCTTCTTGGATTTAcgaagttttcaa
tttttaagtgCGGCATACATAGTCATAATAATGATTTCAttgtgaaaaca
ttttttctgttgcaGGTGTTGTATAGTTTAAGTTACAATCTCTTTTGTAT
ATCACCAAATCTCTTCTGCTATAAACTACTTATTATTATGGACTGTATAT
ACTTTTTTTAACTACTTTTGACACAAAATTGACAACACATTTAAATGTTT
CTTTAATAATCTTAggatattcaaaaatttttagaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034875XLOC_034875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055393-exon-scaffold_253-1491911889:682242..682277TCONS_00055393-exon-scaffold_253-1491911889:682242..682277Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1510915933:682242..682277TCONS_00055393-exon-scaffold_253-1510915933:682242..682277Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1575043694:682242..682277TCONS_00055393-exon-scaffold_253-1575043694:682242..682277Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1491911889:683348..683414TCONS_00055393-exon-scaffold_253-1491911889:683348..683414Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1510915933:683348..683414TCONS_00055393-exon-scaffold_253-1510915933:683348..683414Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1575043694:683348..683414TCONS_00055393-exon-scaffold_253-1575043694:683348..683414Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1491911889:683657..683812TCONS_00055393-exon-scaffold_253-1491911889:683657..683812Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1510915933:683657..683812TCONS_00055393-exon-scaffold_253-1510915933:683657..683812Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1575043694:683657..683812TCONS_00055393-exon-scaffold_253-1575043694:683657..683812Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1491911889:686292..686366TCONS_00055393-exon-scaffold_253-1491911889:686292..686366Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1510915933:686292..686366TCONS_00055393-exon-scaffold_253-1510915933:686292..686366Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1575043694:686292..686366TCONS_00055393-exon-scaffold_253-1575043694:686292..686366Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1491911889:687052..687159TCONS_00055393-exon-scaffold_253-1491911889:687052..687159Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1510915933:687052..687159TCONS_00055393-exon-scaffold_253-1510915933:687052..687159Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1575043694:687052..687159TCONS_00055393-exon-scaffold_253-1575043694:687052..687159Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1491911889:687348..687538TCONS_00055393-exon-scaffold_253-1491911889:687348..687538Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1510915933:687348..687538TCONS_00055393-exon-scaffold_253-1510915933:687348..687538Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1575043694:687348..687538TCONS_00055393-exon-scaffold_253-1575043694:687348..687538Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1491911889:688523..688733TCONS_00055393-exon-scaffold_253-1491911889:688523..688733Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1510915933:688523..688733TCONS_00055393-exon-scaffold_253-1510915933:688523..688733Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1575043694:688523..688733TCONS_00055393-exon-scaffold_253-1575043694:688523..688733Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1491911889:689270..689499TCONS_00055393-exon-scaffold_253-1491911889:689270..689499Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1510915933:689270..689499TCONS_00055393-exon-scaffold_253-1510915933:689270..689499Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1575043694:689270..689499TCONS_00055393-exon-scaffold_253-1575043694:689270..689499Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1491911889:689775..690220TCONS_00055393-exon-scaffold_253-1491911889:689775..690220Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1510915933:689775..690220TCONS_00055393-exon-scaffold_253-1510915933:689775..690220Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1575043694:689775..690220TCONS_00055393-exon-scaffold_253-1575043694:689775..690220Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1491911889:690548..690675TCONS_00055393-exon-scaffold_253-1491911889:690548..690675Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1510915933:690548..690675TCONS_00055393-exon-scaffold_253-1510915933:690548..690675Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1575043694:690548..690675TCONS_00055393-exon-scaffold_253-1575043694:690548..690675Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1491911889:691968..692138TCONS_00055393-exon-scaffold_253-1491911889:691968..692138Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1510915933:691968..692138TCONS_00055393-exon-scaffold_253-1510915933:691968..692138Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1575043694:691968..692138TCONS_00055393-exon-scaffold_253-1575043694:691968..692138Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1491911889:692388..692676TCONS_00055393-exon-scaffold_253-1491911889:692388..692676Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1510915933:692388..692676TCONS_00055393-exon-scaffold_253-1510915933:692388..692676Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1575043694:692388..692676TCONS_00055393-exon-scaffold_253-1575043694:692388..692676Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1491911889:692889..692983TCONS_00055393-exon-scaffold_253-1491911889:692889..692983Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1510915933:692889..692983TCONS_00055393-exon-scaffold_253-1510915933:692889..692983Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1575043694:692889..692983TCONS_00055393-exon-scaffold_253-1575043694:692889..692983Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1491911889:693341..693470TCONS_00055393-exon-scaffold_253-1491911889:693341..693470Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1510915933:693341..693470TCONS_00055393-exon-scaffold_253-1510915933:693341..693470Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1575043694:693341..693470TCONS_00055393-exon-scaffold_253-1575043694:693341..693470Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1491911889:693689..694328TCONS_00055393-exon-scaffold_253-1491911889:693689..694328Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1510915933:693689..694328TCONS_00055393-exon-scaffold_253-1510915933:693689..694328Clytia hemisphaericaexon
TCONS_00055393-exon-scaffold_253-1575043694:693689..694328TCONS_00055393-exon-scaffold_253-1575043694:693689..694328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:682242..694328 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0776899	6.32225	0.618579	5.3811	3.22451	1.52276	2.8643	0.31236	0.00464184	0	0.580594	1.03122e-06	3.18074e-09	0	3.74813e-08	5.59613e-07	0.0941659	0	2.1854e-09	2.31449e-08	2.04251	4.30242	1.16527e-05	0.371354	0	0
Blast
[Close]
BLAST of TCONS_00055393 vs. Swiss-Prot (Human)
Match: SP20H (Transcription factor SPT20 homolog OS=Homo sapiens GN=SUPT20H PE=1 SV=2)

HSP 1 Score: 280.026 bits (715), Expect = 2.995e-80
Identity = 155/392 (39.54%), Postives = 243/392 (61.99%), Query Frame = 2 
Query:   38 KSLFERLLNAYVEEKKQQQEKGDFNKESMLLQKIVKEDDLGVLIVNLYPGSDGYSLMLKKKDGSDVETYKLPYEESEFLDYLDTQELPPLLVDVLESAQVDLFYDGCVIVELRDYRRST---QKNFDTTYILLKPTSQTIVRDVNSLMSD-PKWSNEDKAKLESQLVLAMQPRLCLDPSPKVLYTANKIQHHANKWNHKGLRRSMKRFSQPYLNRAYLCSHTPSPPCLKLLDFIKQNKDKRSSNSFH-KLSRATQHTDMWKQRQLNLSVPSKIDVTSHAKLMELPKYTTDYTP------EKIQEIILEGEKTNNRSYYCRVTIQRRGSTGEYIGDLYL-----EEDHGKTKEDTKKDGRACRFSLVNRITAQRYLQQFQELYTEEGRKSVKI 1165
            KS+F++L + Y+EE +++ E     +   LL+K+V ++ L  L+VNLYPG++GYSLML+ K+GSD ET +LPYEE E L+YLD +ELPP+LVD+LE +QV++F+ GCVI E+RDYR+S+      + + +ILL+PT QT++ DV+S+ SD  KW+ EDK  LESQL+LA    LCLDPS  V  TAN++ ++  K N + ++R  KR+S+  LNR    SH P PP L+LLDF+++ K++++   +  K+S+A    DMWK+   NL++PS++DV  +AK+ +  K + D  P      +   + + E E    +    ++TI +      Y G +       E D   +   +  D  +  F + ++  A+R + Q+QEL   E +  VK+
Sbjct:   34 KSVFQKLYDLYIEECEKEPEVKKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAIPSEVDVEKYAKVEKSIK-SDDSQPTVWPAHDVKDDYVFECE-AGTQYQKTKLTILQSLGDPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCPVKM 423
The following BLAST results are available for this feature:
BLAST of TCONS_00055393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SP20H2.995e-8039.54Transcription factor SPT20 homolog OS=Homo sapiens... [more]
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