|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055371 ID=TCONS_00055371|Name=TCONS_00055371|organism=Clytia hemisphaerica|type=transcript|length=4957bpRun BLAST on NCBI protein sequence of TCONS_00055371-protein >TCONS_00055371-protein ID=TCONS_00055371-protein|Name=TCONS_00055371-protein|organism=Clytia hemisphaerica|type=polypeptide|length=875bp MLSTVDALGSSDPFNMMVKDMPDFEKPALKKSLFERLLNAYVEEKKQQQERun BLAST on NCBI transcript from alignment at scaffold_253:680314..694328+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055371 ID=TCONS_00055371|Name=TCONS_00055371|organism=Clytia hemisphaerica|type=transcript|length=14015bp|location=Sequence derived from alignment at scaffold_253:680314..694328+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:680314..694328+ >TCONS_00055371 ID=TCONS_00055371|Name=TCONS_00055371|organism=Clytia hemisphaerica|type=CDS|length=44676bp|location=Sequence derived from alignment at scaffold_253:680314..694328+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055371 vs. Swiss-Prot (Human)
Match: SP20H (Transcription factor SPT20 homolog OS=Homo sapiens GN=SUPT20H PE=1 SV=2) HSP 1 Score: 281.182 bits (718), Expect = 4.953e-79 Identity = 155/393 (39.44%), Postives = 244/393 (62.09%), Query Frame = 3
Query: 2019 KKSLFERLLNAYVEEKKQQQEKGDFNKESMLLQKIVKEDDLGVLIVNLYPGSDGYSLMLKKKDGSDVETYKLPYEESEFLDYLDTQELPPLLVDVLESAQVDLFYDGCVIVELRDYRRST---QKNFDTTYILLKPTSQTIVRDVNSLMSD-PKWSNEDKAKLESQLVLAMQPRLCLDPSPKVLYTANKIQHHANKWNHKGLRRSMKRFSQPYLNRAYLCSHTPSPPCLKLLDFIKQNKDKRSSNSFH-KLSRATQHTDMWKQRQLNLSVPSKIDVTSHAKLMELPKYTTDYTP------EKIQEIILEGEKTNNRSYYCRVTIQRRGSTGEYIGDLYL-----EEDHGKTKEDTKKDGRACRFSLVNRITAQRYLQQFQELYTEEGRKSVKI 3149
+KS+F++L + Y+EE +++ E + LL+K+V ++ L L+VNLYPG++GYSLML+ K+GSD ET +LPYEE E L+YLD +ELPP+LVD+LE +QV++F+ GCVI E+RDYR+S+ + + +ILL+PT QT++ DV+S+ SD KW+ EDK LESQL+LA LCLDPS V TAN++ ++ K N + ++R KR+S+ LNR SH P PP L+LLDF+++ K++++ + K+S+A DMWK+ NL++PS++DV +AK+ + K + D P + + + E E + ++TI + Y G + E D + + D + F + ++ A+R + Q+QEL E + VK+
Sbjct: 33 RKSVFQKLYDLYIEECEKEPEVKKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAIPSEVDVEKYAKVEKSIK-SDDSQPTVWPAHDVKDDYVFECE-AGTQYQKTKLTILQSLGDPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCPVKM 423 The following BLAST results are available for this feature:
BLAST of TCONS_00055371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.