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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055352 ID=TCONS_00055352|Name=TCONS_00055352|organism=Clytia hemisphaerica|type=transcript|length=1776bp
CAAACTTGGGATCTGAAATCTGAAATGGGATCTTTAGAATTGAACGAAAA
AACACCAAGGAATAAAAATACGAGAAACTTCGTAGAAGaGAAGAAAGAGG
GTTCGTACGCAACAAAGGTTGAAGAATATTCGTCATCTTTCACCATCCAT
GGTTTATCCAGAAGCATTCACACCAACTCTCGTCTCGAACGTATCTTTTG
GGCTCTGACTCTCTCTTTAGCAATCGTTGTTGCATGTCTTCTGGTGCAAA
CACTGATCAATAAATTCTGGAGACAAGATGTATACGTCAAAAGTGAGACA
CGAGTCACTAAAAATAACACTTTTCCCGCTGTGACTTTCTGTTTACGACC
CATTGCGcaatttttcaagaagtatGAATTTTGTGAATTAAGAGCTAATG
ATGCGTTGCCAGGGAAATTTCATCCTTCACTCAAATCTTGTAATACAAAG
GCTGCTTGGTGGGAAACGCTTTTTCATTTTGAGAATATGTTAGAGTTCTC
ATATGTTCCTGGTCAGATAGAAATTGATGCTGTACCAGCAAGAAATTTCA
ACATTATGTGCCCACGTTCTAGTGTCTCTAGTATGTGTGTCCAAGACTAT
CTAGATGAGAAATATTTTCGGACGCTAAATGGTTCTTGGGATTGTATACA
GTGGAACTATAACGGAGATTTCTCAAATTCTCAGAACAGAATTGATTTAC
AATTAACAGTGGATTCTTTTCACGAAGCAATTACTTCCGTGGTCGCTTAT
GTACACGATCACCAAGAATCACCGATACCTTCCGATCGATTTGTTCGATT
TGAACGTTTCTCGAACACCGAGATTCAAATAAAGAAATCTATccggaaaa
aaatcaaaagagaaTCACCAAATAACTGTGAAAATCAATATTACAACaat
cccaaaaatattttccctggTAAATATTCTGTTGAAGCTTGCATTGAAAC
AAATACTTGTTTAGAGGCCTTGAAAAAATGTGGAGAAGTGATCGATTTTT
GTCGCTCGTTCATTCCTCATCCGTTGCTAGAGAGACATTGGGTTGCTAAC
CAATCATTGGTTGATGTTCATGATTGTCTGTATGAAGGCTATAGGAAAGG
TTTATTTGACGCTGACGGAGAGATTTGCCCACCACCTTGTGATCGAACCT
TTTTCTCAACCTCGATGTCCGCCACGCGACGAATACCTCCAACGTCAGCT
GTGGTGAGTTTGCTATTTACTGAACGAAATGTGTATGAGACGCAAACTGA
AACAGTCCTGTATACTTGGGAGGACGTGTTAGCAGGTGTCGGTGGAATGA
TTGGCTTATTTTGTGGCTTTTCAATATTGTCTTTTGCTGAATTGATCATT
TACGctggtctgaaaattttattattcttCAGAAAGGACAAACAAAAGAG
AAGGAGAGATTATGAAATGAACGACGATATACCTGGTAGTGCAGTCAACC
AAACGGTTAATCAGTGAAAGAGGAATGTTTGGTATTGGGTTGTTAACAAA
AATCACTAATATCACATCCCGAGAGGAGAGTGCGTACTTGAATGCAGTGA
AATCTTAATCTACTGAATGGAAGAAGAAATTTACTTCTAGTTCCATCTCT
TCGAGCTGGGTTTTCATTCTAGCTGAAAATTGTTTTCTCCCTACACAAAT
TCTCCGACACCCCTGAAAACGCTACTGTCGTCTTACATGTATAATTTATC
ACGTAATCGAaagtttaaaattcaaaattaattagAACCTTATTTTTGAC
CTACTGAGCTCGGAGGTTCTTTAAAT Run BLAST on NCBI protein sequence of TCONS_00055352-protein >TCONS_00055352-protein ID=TCONS_00055352-protein|Name=TCONS_00055352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=488bp
QTWDLKSEMGSLELNEKTPRNKNTRNFVEEKKEGSYATKVEEYSSSFTIH
GLSRSIHTNSRLERIFWALTLSLAIVVACLLVQTLINKFWRQDVYVKSET
RVTKNNTFPAVTFCLRPIAQFFKKYEFCELRANDALPGKFHPSLKSCNTK
AAWWETLFHFENMLEFSYVPGQIEIDAVPARNFNIMCPRSSVSSMCVQDY
LDEKYFRTLNGSWDCIQWNYNGDFSNSQNRIDLQLTVDSFHEAITSVVAY
VHDHQESPIPSDRFVRFERFSNTEIQIKKSIRKKIKRESPNNCENQYYNN
PKNIFPGKYSVEACIETNTCLEALKKCGEVIDFCRSFIPHPLLERHWVAN
QSLVDVHDCLYEGYRKGLFDADGEICPPPCDRTFFSTSMSATRRIPPTSA
VVSLLFTERNVYETQTETVLYTWEDVLAGVGGMIGLFCGFSILSFAELII
YAGLKILLFFRKDKQKRRRDYEMNDDIPGSAVNQTVNQ Run BLAST on NCBI transcript from alignment at scaffold_253:559231..561114+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055352 ID=TCONS_00055352|Name=TCONS_00055352|organism=Clytia hemisphaerica|type=transcript|length=1884bp|location=Sequence derived from alignment at scaffold_253:559231..561114+ (Clytia hemisphaerica)
CAAACTTGGGATCTGAAATCTGAAATGGGATCTTTAGAATTGAACGAAAA
AACACCAAGGAATAAAAATACGAGAAACTTCGTAGAAGGTATGCTTTCTA
AATTATACCTTCTTGAATACTGTAGAAGTAGCTTCTCCCTTTCCCTCCTG
TGTCTCGAAAATTTGCTTTCATAagatcttttttgtttcttttcagaGAA
GAAAGAGGGTTCGTACGCAACAAAGGTTGAAGAATATTCGTCATCTTTCA
CCATCCATGGTTTATCCAGAAGCATTCACACCAACTCTCGTCTCGAACGT
ATCTTTTGGGCTCTGACTCTCTCTTTAGCAATCGTTGTTGCATGTCTTCT
GGTGCAAACACTGATCAATAAATTCTGGAGACAAGATGTATACGTCAAAA
GTGAGACACGAGTCACTAAAAATAACACTTTTCCCGCTGTGACTTTCTGT
TTACGACCCATTGCGcaatttttcaagaagtatGAATTTTGTGAATTAAG
AGCTAATGATGCGTTGCCAGGGAAATTTCATCCTTCACTCAAATCTTGTA
ATACAAAGGCTGCTTGGTGGGAAACGCTTTTTCATTTTGAGAATATGTTA
GAGTTCTCATATGTTCCTGGTCAGATAGAAATTGATGCTGTACCAGCAAG
AAATTTCAACATTATGTGCCCACGTTCTAGTGTCTCTAGTATGTGTGTCC
AAGACTATCTAGATGAGAAATATTTTCGGACGCTAAATGGTTCTTGGGAT
TGTATACAGTGGAACTATAACGGAGATTTCTCAAATTCTCAGAACAGAAT
TGATTTACAATTAACAGTGGATTCTTTTCACGAAGCAATTACTTCCGTGG
TCGCTTATGTACACGATCACCAAGAATCACCGATACCTTCCGATCGATTT
GTTCGATTTGAACGTTTCTCGAACACCGAGATTCAAATAAAGAAATCTAT
ccggaaaaaaatcaaaagagaaTCACCAAATAACTGTGAAAATCAATATT
ACAACaatcccaaaaatattttccctggTAAATATTCTGTTGAAGCTTGC
ATTGAAACAAATACTTGTTTAGAGGCCTTGAAAAAATGTGGAGAAGTGAT
CGATTTTTGTCGCTCGTTCATTCCTCATCCGTTGCTAGAGAGACATTGGG
TTGCTAACCAATCATTGGTTGATGTTCATGATTGTCTGTATGAAGGCTAT
AGGAAAGGTTTATTTGACGCTGACGGAGAGATTTGCCCACCACCTTGTGA
TCGAACCTTTTTCTCAACCTCGATGTCCGCCACGCGACGAATACCTCCAA
CGTCAGCTGTGGTGAGTTTGCTATTTACTGAACGAAATGTGTATGAGACG
CAAACTGAAACAGTCCTGTATACTTGGGAGGACGTGTTAGCAGGTGTCGG
TGGAATGATTGGCTTATTTTGTGGCTTTTCAATATTGTCTTTTGCTGAAT
TGATCATTTACGctggtctgaaaattttattattcttCAGAAAGGACAAA
CAAAAGAGAAGGAGAGATTATGAAATGAACGACGATATACCTGGTAGTGC
AGTCAACCAAACGGTTAATCAGTGAAAGAGGAATGTTTGGTATTGGGTTG
TTAACAAAAATCACTAATATCACATCCCGAGAGGAGAGTGCGTACTTGAA
TGCAGTGAAATCTTAATCTACTGAATGGAAGAAGAAATTTACTTCTAGTT
CCATCTCTTCGAGCTGGGTTTTCATTCTAGCTGAAAATTGTTTTCTCCCT
ACACAAATTCTCCGACACCCCTGAAAACGCTACTGTCGTCTTACATGTAT
AATTTATCACGTAATCGAaagtttaaaattcaaaattaattagAACCTTA
TTTTTGACCTACTGAGCTCGGAGGTTCTTTAAAT Coding sequence (CDS) from alignment at scaffold_253:559231..561114+ >TCONS_00055352 ID=TCONS_00055352|Name=TCONS_00055352|organism=Clytia hemisphaerica|type=CDS|length=2934bp|location=Sequence derived from alignment at scaffold_253:559231..561114+ (Clytia hemisphaerica)
CAAACTTGGGATCTGAAATCTGAAATGGGATCTTTAGAATTGAACGAAAA
AACACCAAGGAATAAAAATACGAGAAACTTCGTAGAAGaGAAGAAAGAGG
GTTCGTACGCAACAAAGGTTGAAGAATATTCGTCATCTTTCACCATCCAT
GGTTTATCCAGAAGCATTCACACCAACTCTCGTCTCGAACGTATCTTTTG
GGCTCTGACTCTCTCTTTAGCAATCGTTGTTGCATGTCTTCTGGTGCAAA
CACTGATCAATAAATTCTGGAGACAAGATGTATACGTCAAAAGTGAGACA
CGAGTCACTAAAAATAACACTTTTCCCGCTGTGACTTTCTGTTTACGACC
CATTGCGcaatttttcaagaagtatGAATTTTGTGAATTAAGAGCTAATG
ATGCGTTGCCAGGGAAATTTCATCCTTCACTCAAATCTTGTAATACAAAG
GCTGCTTGGTGGGAAACGCTTTTTCATTTTGAGAATATGTTAGAGTTCTC
ATATGTTCCTGGTCAGATAGAAATTGATGCTGTACCAGCAAGAAATTTCA
ACATTATGTGCCCACGTTCTAGTGTCTCTAGTATGTGTGTCCAAGACTAT
CTAGATGAGAAATATTTTCGGACGCTAAATGGTTCTTGGGATTGTATACA
GTGGAACTATAACGGAGATTTCTCAAATTCTCAGAACAGAATTGATTTAC
AATTAACAGTGGATTCTTTTCACGAAGCAATTACTTCCGTGGTCGCTTAT
GTACACGATCACCAAGAATCACCGATACCTTCCGATCGATTTGTTCGATT
TGAACGTTTCTCGAACACCGAGATTCAAATAAAGAAATCTATccggaaaa
aaatcaaaagagaaTCACCAAATAACTGTGAAAATCAATATTACAACaat
cccaaaaatattttccctggTAAATATTCTGTTGAAGCTTGCATTGAAAC
AAATACTTGTTTAGAGGCCTTGAAAAAATGTGGAGAAGTGATCGATTTTT
GTCGCTCGTTCATTCCTCATCCGTTGCTAGAGAGACATTGGGTTGCTAAC
CAATCATTGGTTGATGTTCATGATTGTCTGTATGAAGGCTATAGGAAAGG
TTTATTTGACGCTGACGGAGAGATTTGCCCACCACCTTGTGATCGAACCT
TTTTCTCAACCTCGATGTCCGCCACGCGACGAATACCTCCAACGTCAGCT
GTGGTGAGTTTGCTATTTACTGAACGAAATGTGTATGAGACGCAAACTGA
AACAGTCCTGTATACTTGGGAGGACGTGTTAGCAGGTGTCGGTGGAATGA
TTGGCTTATTTTGTGGCTTTTCAATATTGTCTTTTGCTGAATTGATCATT
TACGctggtctgaaaattttattattcttCAGAAAGGACAAACAAAAGAG
AAGGAGAGATTATGAAATGAACGACGATATACCTGGTAGTGCAGTCAACC
AAACGGTTAATCAGTGACAAACTTGGGATCTGAAATCTGAAATGGGATCT
TTAGAATTGAACGAAAAAACACCAAGGAATAAAAATACGAGAAACTTCGT
AGAAGaGAAGAAAGAGGGTTCGTACGCAACAAAGGTTGAAGAATATTCGT
CATCTTTCACCATCCATGGTTTATCCAGAAGCATTCACACCAACTCTCGT
CTCGAACGTATCTTTTGGGCTCTGACTCTCTCTTTAGCAATCGTTGTTGC
ATGTCTTCTGGTGCAAACACTGATCAATAAATTCTGGAGACAAGATGTAT
ACGTCAAAAGTGAGACACGAGTCACTAAAAATAACACTTTTCCCGCTGTG
ACTTTCTGTTTACGACCCATTGCGcaatttttcaagaagtatGAATTTTG
TGAATTAAGAGCTAATGATGCGTTGCCAGGGAAATTTCATCCTTCACTCA
AATCTTGTAATACAAAGGCTGCTTGGTGGGAAACGCTTTTTCATTTTGAG
AATATGTTAGAGTTCTCATATGTTCCTGGTCAGATAGAAATTGATGCTGT
ACCAGCAAGAAATTTCAACATTATGTGCCCACGTTCTAGTGTCTCTAGTA
TGTGTGTCCAAGACTATCTAGATGAGAAATATTTTCGGACGCTAAATGGT
TCTTGGGATTGTATACAGTGGAACTATAACGGAGATTTCTCAAATTCTCA
GAACAGAATTGATTTACAATTAACAGTGGATTCTTTTCACGAAGCAATTA
CTTCCGTGGTCGCTTATGTACACGATCACCAAGAATCACCGATACCTTCC
GATCGATTTGTTCGATTTGAACGTTTCTCGAACACCGAGATTCAAATAAA
GAAATCTATccggaaaaaaatcaaaagagaaTCACCAAATAACTGTGAAA
ATCAATATTACAACaatcccaaaaatattttccctggTAAATATTCTGTT
GAAGCTTGCATTGAAACAAATACTTGTTTAGAGGCCTTGAAAAAATGTGG
AGAAGTGATCGATTTTTGTCGCTCGTTCATTCCTCATCCGTTGCTAGAGA
GACATTGGGTTGCTAACCAATCATTGGTTGATGTTCATGATTGTCTGTAT
GAAGGCTATAGGAAAGGTTTATTTGACGCTGACGGAGAGATTTGCCCACC
ACCTTGTGATCGAACCTTTTTCTCAACCTCGATGTCCGCCACGCGACGAA
TACCTCCAACGTCAGCTGTGGTGAGTTTGCTATTTACTGAACGAAATGTG
TATGAGACGCAAACTGAAACAGTCCTGTATACTTGGGAGGACGTGTTAGC
AGGTGTCGGTGGAATGATTGGCTTATTTTGTGGCTTTTCAATATTGTCTT
TTGCTGAATTGATCATTTACGctggtctgaaaattttattattcttCAGA
AAGGACAAACAAAAGAGAAGGAGAGATTATGAAATGAACGACGATATACC
TGGTAGTGCAGTCAACCAAACGGTTAATCAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055352-exon-scaffold_253-1491911889:559231..559318 | TCONS_00055352-exon-scaffold_253-1491911889:559231..559318 | Clytia hemisphaerica | exon |
| TCONS_00055352-exon-scaffold_253-1510915933:559231..559318 | TCONS_00055352-exon-scaffold_253-1510915933:559231..559318 | Clytia hemisphaerica | exon |
| TCONS_00055352-exon-scaffold_253-1575043694:559231..559318 | TCONS_00055352-exon-scaffold_253-1575043694:559231..559318 | Clytia hemisphaerica | exon |
| TCONS_00055352-exon-scaffold_253-1491911889:559427..561114 | TCONS_00055352-exon-scaffold_253-1491911889:559427..561114 | Clytia hemisphaerica | exon |
| TCONS_00055352-exon-scaffold_253-1510915933:559427..561114 | TCONS_00055352-exon-scaffold_253-1510915933:559427..561114 | Clytia hemisphaerica | exon |
| TCONS_00055352-exon-scaffold_253-1575043694:559427..561114 | TCONS_00055352-exon-scaffold_253-1575043694:559427..561114 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:559231..561114 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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