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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055347 ID=TCONS_00055347|Name=TCONS_00055347|organism=Clytia hemisphaerica|type=transcript|length=1880bp
CAGAAACACACAATTTACCATGGTATAAAAAATTCGAAGAATGGCGGGAT
TGGAGTGAAGCCAATAAATAATTTAACGACCCTTCCTTTTGATTGaggaa
aaaatttgaatgacgtTTAGGTTTGATATGAATAAATAACGCTTCAATCA
GCAGAAAATGATTATGAAACGAGATAGTTGAGAAATAGGAAGAGAAGCAG
ACACTTGTTTTCATCTTTACACTTAAGAGAATGGATATACAGCGCCGTGA
GAGTAGCAATATAACTTGGAAATGGCAAAAGATCACTACAACGTTGCTTT
TGATATGGATGGTGCTTGCCACGGTGGCTGGTGGATTTTACGTCAACGAT
GTCAACNGAGAGAATGGATATGCAGCGCCGTGAGAGTAGCAATATAACTT
GGAAATGGCAAAAGATCACTACAACGTTGCTTTTGATATGGATGGTGCTT
GCCACGGTGGCTGGTGGATTTTACGTCAACGATGTCAACTCTTACGAAGG
AATTgagagatttcaaaaaatctcaatGTATAATTTGAAGAAGTTGTTTT
TATTCCCGGCGTGGACAAGTCTAACATTGATTTTCAATGTCCTGTTAGGT
TACATTGGTGTCTTAACCAGGAAGAGATCATACATTAGAATTAAATTAGC
ACTcgatattttaaacattttgttcaGAGCAGCAATGATTTATTTGTTGG
GAAAGCTTTATGTACCAGCATATGGTAAATGTGCTTTGAAGCGACCAAGA
GGTGTTTCATACAATTCGTGCTGCGAAGATGAGCCTTTCCGCATACCGTG
CTACACGGACACGATACATCGCATCCGGTTAGAGTTTGGTTTGCTTATAG
TGATATTGGTGATGGAAATCTTTTCTTTGGCGACACTCTTTGTGTCTTGT
ATTCTCTATTGCACCAAATGTAATGAGAATTGTGCTGCAAGACATATGGA
AAGCAATAGGGTGAGGTATGAAATAAGACAAGAGAATGTTTTGCTCCAAG
CTAATGATAACCATGTTTAGATATGTAAGTGTGACACATGAGACTGAATC
TTATGGAAAGATAAAGACATATGGAAAGCAATAAGAGACAGAATATCTTG
CTTGAAAACTAATGATCATAAAAAGTTTGATATGTGATGGTGGATAAACC
ACAAGCTAcgttttttaacaaatttattCATTGAATCATTTATAATTCAG
TTTATATTGCAGTTGATAACCAACTCATTTGTAAGAATATTTATACATCA
GTTTTACACAgactctttttgaaatttgactcGACTCTATGCACCAGTGT
TTCATCAGCAAAAAATTGCAACAATAAGAAAGCCTGGCGGCTTTGagatt
acacatttttttaataagtaaCCAAGTTGGTAAGGTTCGAGCCCTGAAAT
TAgccaaaaattatttcactATCTCTTAAAGTAAAATCTTTTTAGTTAAT
CTAAGCATTACAAACGATAGCCTTTGATCCAATAAGCATAATTATGGTAT
AACATCAGGGGTGATCAAAGCAAGTTTTtgctaagcaaccccagccctga
cccgaaaattggagttgcttataaaaatattttgtacgCGCTGCTCAGAT
GTGCAAGGTGCCGGTTGATTTCTTGATGACCATTTTTGTAGCCACGAGTT
CACGTTTCAGGGGCGATGGaaaaatttgagagtttttgtgGAGAGATTTT
TCGTTTAAATTAACTCATCAAATACCATCAATCACTCtgtaacttcaaat
tttcaaatatatttctcCAACTAAGAAAGAATTATTACTCTCAACTTATT
TTTCATTCGGGTTTAAAAGCAGGTCGATAAGgacctacacgcttttttta
taagaatggtgttttttcatttcatcatgg Run BLAST on NCBI transcript from alignment at scaffold_253:518850..520729+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055347 ID=TCONS_00055347|Name=TCONS_00055347|organism=Clytia hemisphaerica|type=transcript|length=1880bp|location=Sequence derived from alignment at scaffold_253:518850..520729+ (Clytia hemisphaerica)
CAGAAACACACAATTTACCATGGTATAAAAAATTCGAAGAATGGCGGGAT
TGGAGTGAAGCCAATAAATAATTTAACGACCCTTCCTTTTGATTGaggaa
aaaatttgaatgacgtTTAGGTTTGATATGAATAAATAACGCTTCAATCA
GCAGAAAATGATTATGAAACGAGATAGTTGAGAAATAGGAAGAGAAGCAG
ACACTTGTTTTCATCTTTACACTTAAGAGAATGGATATACAGCGCCGTGA
GAGTAGCAATATAACTTGGAAATGGCAAAAGATCACTACAACGTTGCTTT
TGATATGGATGGTGCTTGCCACGGTGGCTGGTGGATTTTACGTCAACGAT
GTCAACNGAGAGAATGGATATGCAGCGCCGTGAGAGTAGCAATATAACTT
GGAAATGGCAAAAGATCACTACAACGTTGCTTTTGATATGGATGGTGCTT
GCCACGGTGGCTGGTGGATTTTACGTCAACGATGTCAACTCTTACGAAGG
AATTgagagatttcaaaaaatctcaatGTATAATTTGAAGAAGTTGTTTT
TATTCCCGGCGTGGACAAGTCTAACATTGATTTTCAATGTCCTGTTAGGT
TACATTGGTGTCTTAACCAGGAAGAGATCATACATTAGAATTAAATTAGC
ACTcgatattttaaacattttgttcaGAGCAGCAATGATTTATTTGTTGG
GAAAGCTTTATGTACCAGCATATGGTAAATGTGCTTTGAAGCGACCAAGA
GGTGTTTCATACAATTCGTGCTGCGAAGATGAGCCTTTCCGCATACCGTG
CTACACGGACACGATACATCGCATCCGGTTAGAGTTTGGTTTGCTTATAG
TGATATTGGTGATGGAAATCTTTTCTTTGGCGACACTCTTTGTGTCTTGT
ATTCTCTATTGCACCAAATGTAATGAGAATTGTGCTGCAAGACATATGGA
AAGCAATAGGGTGAGGTATGAAATAAGACAAGAGAATGTTTTGCTCCAAG
CTAATGATAACCATGTTTAGATATGTAAGTGTGACACATGAGACTGAATC
TTATGGAAAGATAAAGACATATGGAAAGCAATAAGAGACAGAATATCTTG
CTTGAAAACTAATGATCATAAAAAGTTTGATATGTGATGGTGGATAAACC
ACAAGCTAcgttttttaacaaatttattCATTGAATCATTTATAATTCAG
TTTATATTGCAGTTGATAACCAACTCATTTGTAAGAATATTTATACATCA
GTTTTACACAgactctttttgaaatttgactcGACTCTATGCACCAGTGT
TTCATCAGCAAAAAATTGCAACAATAAGAAAGCCTGGCGGCTTTGagatt
acacatttttttaataagtaaCCAAGTTGGTAAGGTTCGAGCCCTGAAAT
TAgccaaaaattatttcactATCTCTTAAAGTAAAATCTTTTTAGTTAAT
CTAAGCATTACAAACGATAGCCTTTGATCCAATAAGCATAATTATGGTAT
AACATCAGGGGTGATCAAAGCAAGTTTTtgctaagcaaccccagccctga
cccgaaaattggagttgcttataaaaatattttgtacgCGCTGCTCAGAT
GTGCAAGGTGCCGGTTGATTTCTTGATGACCATTTTTGTAGCCACGAGTT
CACGTTTCAGGGGCGATGGaaaaatttgagagtttttgtgGAGAGATTTT
TCGTTTAAATTAACTCATCAAATACCATCAATCACTCtgtaacttcaaat
tttcaaatatatttctcCAACTAAGAAAGAATTATTACTCTCAACTTATT
TTTCATTCGGGTTTAAAAGCAGGTCGATAAGgacctacacgcttttttta
taagaatggtgttttttcatttcatcatgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055347-exon-scaffold_253-1491911889:518850..520729 | TCONS_00055347-exon-scaffold_253-1491911889:518850..520729 | Clytia hemisphaerica | exon |
| TCONS_00055347-exon-scaffold_253-1510915933:518850..520729 | TCONS_00055347-exon-scaffold_253-1510915933:518850..520729 | Clytia hemisphaerica | exon |
| TCONS_00055347-exon-scaffold_253-1575043694:518850..520729 | TCONS_00055347-exon-scaffold_253-1575043694:518850..520729 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:518850..520729 + |
Blast
The following BLAST results are available for this feature:
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