TCONS_00055332 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055332
Unique NameTCONS_00055332
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055332 ID=TCONS_00055332|Name=TCONS_00055332|organism=Clytia hemisphaerica|type=transcript|length=502bp
CGCCGTTTCAATGGCATTGGAAGTTCCACAAGCAGCAGAAGGACCACATA
TTGCCAAAGATGTTGATTGTCCATCATATTTGTGTAATGGAAAACCAGAT
GGAAATTTCGAATACAGACCATATTCTGGATATGTCAAAAACCAATTCGT
TCAATGTGTTGATGGAAAACCTTCATGTCAAGTTTGCTGGCCAAAGAATC
TTGAATTCTCGGAAAAATGCAACCAATGTCTATACAGTGCTCATGATGAA
TGTGTGTCGACTGTTGCATTCAGCCCTGCTGTCACCTCATTCTGTCCTGA
CAAATGCCCACACCGTGGACCAAAATTCAGTGGAAACATTGCTGACTCAG
ACAACAACAAACATTACATTGCATGCTGGGAAGGTGTGACTGTTGGTTGT
GTTGATTGTCCAAAAGGATTGTTGTTCAACGAACAATGGAATGCATGTTT
ATACAACGGAGTACACATCACCAAACCTGGATCCCACTAAATTGAAATCC
AT
Run BLAST on NCBI

protein sequence of TCONS_00055332-protein

>TCONS_00055332-protein ID=TCONS_00055332-protein|Name=TCONS_00055332-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
AVSMALEVPQAAEGPHIAKDVDCPSYLCNGKPDGNFEYRPYSGYVKNQFV
QCVDGKPSCQVCWPKNLEFSEKCNQCLYSAHDECVSTVAFSPAVTSFCPD
KCPHRGPKFSGNIADSDNNKHYIACWEGVTVGCVDCPKGLLFNEQWNACL
YNGVHITKPGSH
Run BLAST on NCBI

transcript from alignment at scaffold_253:270995..280701+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055332 ID=TCONS_00055332|Name=TCONS_00055332|organism=Clytia hemisphaerica|type=transcript|length=9707bp|location=Sequence derived from alignment at scaffold_253:270995..280701+ (Clytia hemisphaerica)
CGCCGGTAAGTCAACCTAAAATCACAAATTTCATTTGGCAAATAAAAAGT ATGGCTAAACCTTAACCTACTCTAATGTCAACCTTAGAAGATAAAGCTTG AGGCAATGGCAATTGTAATTAAAACTATGAACTGAGCATATATTTCCCCA CTTTCTTACAGTTTCAATGGCATTGGAAGTTCCACAAGCAGCAGAAGGAC CACATATTGCCAAAGATGTTGATTGTCCATCATATTTGTGTAATGGAAAA CCAGATGGAAATTTCGAATACAGACCATATTCTGGATATGTCAAAAACCA ATTCGTTCAATGTGTTGATGGAAAACCTTCATGTCAAGTTTGCTGGCCAA AGAATCTTGAATTCTCGGAAAAATGCAACCAATGTCTATACAGTGCTCAT GGTAAGAGAAATGATGTTTTTTCGACATATTGATCTGCAAACTTTGAGGT CATGAAGGCTCCCATAATCATAATCACAGCCTATGTGAACTTACAGGGTA TATTACTTAACTTCTACGCACTTCTTTTCTTTCAGATGAATGTGTGTCGA CTGTAGCATTCAGCCCTGCTGTCACCTCATTCTGTCCTGACAAATGCCCA CACCGTGGACCAAAATTCAGTGGAAACATTGCTGACTCAGACAACAAAAA ACATTACATTGCATGCTGGGAAGGTGTAACTGTTGGTTGTGTTGATTGTC CAAAAGGATTGTTGTTCAACGAACAATGGAATGCATGTTTATACAACGGA GTACACATCACCAAACCTGGATCCCActaaatttatgatttttatgattt tctcTTCTTTATCttgtaaattttaaaacattaaaacgaaaaagaaatca aactgcatgaaaagcaaacaaaatgatattattgttatcCTCTAGACctc taaaaactcaaaataaacaGTCTCCAACTATTGAATAAATCTTCAGATGA GCTAGTAGGGTACTTTGGATTAATGAACCTTCCTCGGAAAGTATTGAAAG GACAACATTATCGCATAACGTTATAGAAACTGTCATTTTCACCAAAATCG TGTGTGACTGACTGTCGAGGCCATACACATTGGGGGACCCTTACAATGCT GTTTTGGAAGTCTGGAAAACCGCATCTACGGCATTATCTTACTTACCTTA CTCACCCCCAGGCCCTGCACGATCGTAGTGTCCTGAATGTTGAATTCTTT CTATCCTTAACCCCTCGAAGAATATTAGAACGTGCGAACACTGCACTGGG ATCAACGAGTATTTTGCCAAATATTTAGAGGTCTAACTGTAGCCATGATG GGACACTATTCAACTACCTGAGTAGTTTCATTGCATCTACTGAACAAGAT ATAAATTGCCACCTCGGAAAAGCATGGGCTGCATTGAATAATATGACCAA AATCTGGAAATCAACTTTACCGCAgacaatttaaaaagaaatttctttag aGCCACTATAGAATCGGTTCTTGTCTACGGCTCAATCTCCTGGACATTAA CTTCTGCACTGGAAAGAAAGATCGATGGGGCTTATACAAGAATGTTGAGA GTAGCGTTAAACAAATCCTGGATGGATCACGTTACTAATGTCGAGCTTTA TGGTAAGATACCTTGCGTTACATCAACAATCCGAGAACAGCGCCTACGTT TTGCTGGCCACTGCTGGCGGAGCTAAAACAAACTATCCTCAGAGGTAATA CTTTGGGAGCCCCTTCATGGAAAAAGACCAAGGGGTAGACCAAACAAAAT CTACATCGACCAACTGAGAGATGATGCAGGCTGCTCAAAGGAAGACCTTC CAATTAATGCCATGGGACATTGACAACAGTGGAGAGAACGTCTCATCGCA AGCCGAGCAAGCTTGACCTGTTAAGATAAGGTTTCAGGGTAGCTTTTAGg ggaaaaaaattagaatttgGCATCTGAAAGAAATCAATTTTTCTGACAGG GTCCTTTTATGAGCTCAAGTGACACGTTTCGTCGTCAGAACCCAGCTCCC AGAAATTATTGCTTATGATAGGTGAATCATAAGAAATCTACATTAAGCTG AAGCAGAGACTAAGCGGCGAGTGCAACAGGTTTAAATGTTAGATTAAAGA AAACAATACACGTCTCGATAATCCTTTATCATTAATAAAAGTGGTATCAA AACGAAGATGATTGGCTGAAATTAGAAACAAAATATAATCCACAGATAAT CCTTTCCAGGATGAAAGTTGAAACGTTGCGTACTGACAAACACAACTTCC GGTGGTAAATTCTGGCAGACTGTTTGAACGAATTGTAGTTCACAAAACAC CGATGTAATGTTTTTGTTGGAAACGAAAAGCTTATCACGTTCGAAataac aaaacatttttgataatttttgtagTTGAATGACTAAGGAGTAAATGTCT GCTCCCGCTTTTACATTTCTTCCGATGCTTTATCGGTAACTATCAACAAC TATCAGTACATCTATCAATGAGTGCCgagtatgtgcgagccataagggtc ccttttacACATTCTtgaaagtccctcaaagggggacaaaaaccattaaa aataatttaatctcTGTACGGGTTCCAAAATTATGAACATCAAAAATCAT CTCCCTTAAAGGGTCATagattcttgaaatttggactaaaatttgaaatt ttgtttaaaacttAGGGGAAATAGTCTTTCCAAGGTTGGCAAACACgtca aaaaagttttcgaactttggctcggaTATACAAGTAATCTCACGAAACTA GTACCCCACCGGCTGCAGATATCAGACAGCCGTATCAGCTCAAATAACCG TCCCGTCAGAAAGGGTCATAAAAGCCCTTTTTACTTCAATGTTCTTGAGC AAATCTTTTTCTGCAAGACAATCACTTTTGCAAAACAAACACATTAATGT CTAATTAgatttgtttgtgattgatgctgcagagtgctcaatgaaatcag agccaatttaaattttaaaagttatctttcatcccaaaataaaaaagtac actACTCCGAGTTTCATGCTTACTGCACTTGTCAAATgtacaaataaaaa tttatttgtacATTTGACAAGTGCAGTAAGCATGAAACTCGGAGTagtgt acttttttattttgggatgaaagataacttttaaaatttaaaatttaatg tCTAATTAGCTAATTAAGTGATTAAAAACGAGTAACTACTTCTAAAAATA GTGCAAAATCACAGGATGTAATATCTCTGGCACTTCTTCCATCGAAAATG cggaaaacaagaaaataaaataaaagggaTGGTTATATAACCCATTTGGA AAGACACTCTATATAAGACGCAGATTTTGACAGCAGCCTCATCACAAATC TTCAACAACAGCATAAAGAAAAgcaaaagaagaaatatttGATCAAACTT CAAATCGTAATGATGAAAATCGCTATCATTGCAGCTCTACTCGCCGGTAA GTCAAACAGCAATCACAAATTGAATTTATTAAGTAAATCTTGAATAAAAC TTAAATTACTCTAACGTAAAACTTAGAAAATGAAAAGCTCTTTTCAGAAA GCAAACAAATTTTTGAGCACTTGTGATAAAAAAGTTTTCTCCACTTCCTT ACAGTTTCAATGGCATTGGAAGTTCCACAAGCAGCAGAAGGACCACATAT TGCCAAAGATGTTGATTGTCCATCATATTTGTGTAATGGAAAACCCGATG GAAATTTCGAATACAGACCATATTCTGGATATGTCAAAAACCAATTCGTT CAATGTGTTGATGGAAAACCTTCATGTCAAGTTTGCTGGCCAAAGAATCT TGAATTCTCTGAAAGATGCAACCAATGTCTTTACTCTGCCCATGGTAAGA GAAATGATGTTTTTGACATATTGATCTGAAAACTTTGAGGATATGAAGGC TCCCATAGTCATATTCATAGCCTGTGCGAACTTACAAGCATTCTGCTGAA CTTTATTAAACCAATCAAGATTATCAGGGTTTATTATTTAACTTCCACCC ATTTTTTATTACAGATGAATGTGTCTCGACTGTAGCATTCAGCCCTGCTG TCACCTCATTCTGTCCTGACAAATGCCCACACCGTGGACCAAAATTCAGT GGAAACATTGCTGACTCAGACAACAACAAACATTACATTGCATGCTGGGA AGGTGTGACTGTTGGTTGCGTTGATTGTCCAAAAGGATTGTTGTTCAACG AACAATGGAATGCATGTTTATACAACGGAGTACACATCACCAAACCTGGA TCCCACTAAATTGGTTCCATTTACCAATCCCacaatttatttcaaatttt tctgatcttttttaattcttgtaaagttttatttgatattttcataaaaa agacaCTGAGTACACATTAAATCCATTGTGGTATCTTTTTACTTCTCCTA CACTTATCTCCCCTACACTGAACACAAACAATAGCTGTAAAAATTATCAC CAAAAAGGCTTCAATTGAATGAGTATATGAGTCTCAGACAACGTTTGAGG TGTCAAAACTAAAGAAAGATCTTAATTTTATGAAAGATTCGAAATATTCT GGCCTGCAAAATACCATCCTACCATCTCGAAACCTcacttaaatgttctt atggtCTTAAAAACTAACTTAAAAGACAAACGCTATAAAGACAAAcgtta aaaatttttcttgtattttgggGCAGTTTTGACctaattaaaatgaaaaa aatgggcTGTAAATCAGAGATAGTTGTCTAAAAGCAATAAAACCTTCCAC AATATTACAACTATACCGACTACTACGGCCCTGTGTgaaattcaaaagtt atgtattttttttaaaatagattttttcacaaaatcttgatattcgggtc tgtaaaatacacatcaTTCGTGTTACCATCTTGAAACTTTTCACACGCAA TCTTTGATGTTTTATGTAAAACCGTGCAAAGTTTTAATAGGTTTTAATAT GTAGTCCATGAGATATCTTGAAATGCAAAGCCCTACCCCAGGAAAACTTC TCCAAAAACGATTGCCAAGTATCCTTGAAACACCAACCCTGAAAAGTTAT TGCCTCCTGGTTAGCCTGTAAACCATCGCGATTCTCTAAATATAGATATG TTTGAAccgaaaaacagtttcaaatcTTTTTCACCGTCAAGATGGTACCT CATGTCCCATACTGCGTGGACTATGATAGTATTCGAcagggtaataaact tttcactttaCTGAAATTAATTTCTCATTGTTCTAAGAAATTCTATCGAT AATTAACAATTAAATGAGTTGTAAACATGCCCAAAAATTCAGTTAAATTT CAAAGACATACTCAAGCCTCATAGCTCTCATCTCATACTCCATAAAACTT TCGATCCAATGAGGAGTCAACttcttttcaaactcgagatatcgcatttt gaagttaaTCCCAAATccatgacgtcattgggtctctTTACCCCTAACGT TGCCAACGGTAAATTCACAAATTTCAGATTTCgattgcactgcaacgact tatTCTTAAAAGCGGAAAAAAagcaaagatgaaaaatttgcacaaaatcg ATACTTCATCATCCATTCTACTCATTTCCATAATACACAGATTTTTACGT CATGCCACTAgggaaaggatgctacactgcCTATTTGGGCGCTTCGCGCT CTGAAAAGAGTCGTCCCGCAAACATATCAAAACGTTTTTGTGCTCCGTTC GCTCGCATAGTTGTTCCAAAGATTTCTTAAAGGGAACACAAAATGCCAGC ATCAGAAAATTGCCTATTCAGTTTGCCCCAATTTTGGTCCCCCACGCTAC TGATTgaactaaaatttgaattattgacTCCAAATGTCAATTTTCTATAC TCGTCATATTAAAAAATGTTGTACCTCAGGTCAAGAGCAGGTAATGTTAT GTCGCAAAACAAAATTCCAAATACTtctaaaacattaaaatcatatTAAA TTATGGAAACCACAATTACAGACAATTACAATCAAACATGTCAAAAGATC ATGTGATTAATCATCAATTTCATGCACGTTCAATATCCAAATAAAGATGA GAATTTAATGAAGTCTACCGGTTCGCTTCCCATTGAACACCAAACAGAGG ATTTCCGTAAATCGAGCTTAATGTGAAAATACCTGAGGTTTGCAGACGCG TAGTGAATTACTTCTTATGTAAGGCTTTTCGTTAATTCTGTCTGGAGATA TGTTTTGGAATTTTAAGTGAGGACAAATGCTCCTACAATCAGGGTCCaaa tatattgggaattttggttaattcctcgttttcagcaatttaaagttcgg gcgcaAAAGtggtttttgggcaaattgataaatttattagaatatttcaa ttcgggagatGTTTATagacttctaggctatattctgagccctattggaa tattcttggacttttagttcctcagatcctaagctcGTAAGTCTTAAATc gagcgttaaaactcagagtaaAAACTCTACCCATCCAAcataatttagag cgcttccaaatcgtttgcggttgtaagatttcgggagagtttcacttttt tctcaaatattatgacttggATTGTAGTCTGCTTCAAAGGACTTTgcatc atcaaaaattattagaaaACAAAGTTCATCTAGAAGTAGACTCTAGCCTa tatcatttttacaaatttgacgtcaaacagAAAGGTTGTGCTCttcgttt atttttcaaaatgaagaattttcaataaaattttaaaaatatggaaaaaa tagccAAATTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNCATCACCTGGCAAGATCCTGATCCCTGATGAAGA TGCGAGTGACAACAATCGATGTACCGAGCATAATTGTATAAAAGACGATG AAAAAATGAGAATTCAATGACATAAATGCCAACGAACGCTACATTATGCC TGCACTGGACTACCACCATACCagttaaatatgtttttaaataaaggtta CCGAAAATACGTGTGTATAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAATCT AATACAGAGCCAGTTTTCCACGCTAGAAACAAAACTAACATCCAAGATAG AAGAGACGTTGAATAACAAGACTGCAAAAATTCAAACCGCAANGAACCAC GTAAGAAAAGTTTTGCTGAAGNNAATTATCCATGgggtaaatgaaaatga aaataaagaagatatTGATTTCGTTACTGAGCTTCTGAATAACGTTAATT TAAAGACTCAACCAACCTACGTCTCTCGTGTTGGAAAAGAATCTAAGGTT ATGCGCCCAATCAAAGTTGTATTCAAAGACAGTCATAACAAATANNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAATG GAGAGGGAACAAATCAAAGAGTGGAAAAAGAGAGCAGACGAGATGAATAA AGCCAGATCGAATGACGATTTTAAATGGAGGGTACGAGGAAGCCCTcgga aaaattatattttaaaaagattttttgtacaagaacGGTTTAGAGGCCCT TTTGCCTCAActgtaatcaccttacaaattgtaaagtagcgttgactttt attagcctttgttgctacctgttcgtcaacttgaaataaactattacata catgGACCCGATGAAGTCCCTCCCGAATAGAATATTcggcaaaaaaatta tcctcatgggcaaaatattttaaaatcttttcctAATTGggaaaatctat taaaaaaaactgtttgaccttgctatataagaacaaactatataagaaca tgatgcttcaatagccaaaatgttaagaacaagttgagaacattttaatg ctttcaaaaatcttggatgttctcataaaataaATGTGCATTTCAATTAA ATTTGTGTCGTAAAAGAACAGACATATTCTAAAATATAGAACACAAATGT AAGGGAGTTGCAATAAAATGTTGTTTGGAAGGCTAATCAAACTGTCAACC ACCTCAAGCATAAAACTTGAGGAACAAGttaattactttaatttttattg aaatataatttttggaaTTCGGAAATTACAGGAGAAAGTTAACGATCTTG TTTTGGTGTATTTCTTACATAACGCCACCATATAAAATGTGGAAGATCTG AACAACCGAACATCATCCACAATCATTCAATTGGTGAAGCGAAATCACAA CATTCattcaaaatgatgaaattcACAGTTCTTGCAACTTTGTTGGCCGG TAAGTCCAATTATAGTATACTTTTAAAGCTCTTTGAAAATCTTCACAACT GAGGCTGGTCATTTATTTGATGCTACAATGGAAAAATATCTATAATATTT ATCTTCAGTTtattttcactttcaatttctttcCGAATGTAAACTGGTAT GGTCATACAGTTCAAGTATAAAAGTCTAAAGTCAAAAAAGCAAAGGGGTT CTTATAGAAGATAATCTTTAATAATCAGCAAGTTCAtctttttaatcgaa ttttgTTTCTTATTCTTACAGTTTCAATGGCATTGGAAGTTCCACAAGCA GCAGAAGGACCACATATTGCCAAAGATGTTGATTGTCCATCATATTTGTG TAATGGAAAACCCGATGGAAATTTCGAATACAGACCATATTCTGGATATG TCAAAAACCAATTCGTTCAATGTGTTGATGGAAAACCTTCATGTCAAGTT TGCTGGCCAAAGAATCTTGAATTCTCTGAAAGATGCAACCAATGTCTTTA CTCTGCTCATGGTAAGGAAAatacttttattttaaaatagcAATCTAAAA GACTTGAAAATATGAAGACGTCTATGATTTCCAACCCATGTGAACTTACA AGTATTCTGAACCTTGTCCTAATTAACTTATATTCCTTCTTTTCTTTCAG ATGAATGTGTGTCGACTGTTGCATTCAGCCCTGCTGTCACCTCATTCTGT CCTGACAAATGCCCACACCGTGGACCAAAATTCAGTGGAAACATTGCTGA CTCAGACAACAACAAACATTACATTGCATGCTGGGAAGGTGTGACTGTTG GTTGTGTTGATTGTCCAAAAGGATTGTTGTTCAACGAACAATGGAATGCA TGTTTATACAACGGAGTACACATCACCAAACCTGGATCCCACTAAATTGA AATCCAT

Coding sequence (CDS) from alignment at scaffold_253:270995..280701+

>TCONS_00055332 ID=TCONS_00055332|Name=TCONS_00055332|organism=Clytia hemisphaerica|type=CDS|length=1467bp|location=Sequence derived from alignment at scaffold_253:270995..280701+ (Clytia hemisphaerica)
GCCGTTTCAATGGCATTGGAAGTTCCACAAGCAGCAGAAGGACCACATAT
TGCCAAAGATGTTGATTGTCCATCATATTTGTGTAATGGAAAACCAGATG
GAAATTTCGAATACAGACCATATTCTGGATATGTCAAAAACCAATTCGTT
CAATGTGTTGATGGAAAACCTTCATGTCAAGTTTGCTGGCCAAAGAATCT
TGAATTCTCGGAAAAATGCAACCAATGTCTATACAGTGCTCATGATGAAT
GTGTGTCGACTGTTGCATTCAGCCCTGCTGTCACCTCATTCTGTCCTGAC
AAATGCCCACACCGTGGACCAAAATTCAGTGGAAACATTGCTGACTCAGA
CAACAACAAACATTACATTGCATGCTGGGAAGGTGTGACTGTTGGTTGTG
TTGATTGTCCAAAAGGATTGTTGTTCAACGAACAATGGAATGCATGTTTA
TACAACGGAGTACACATCACCAAACCTGGATCCCACTAAGCCGTTTCAAT
GGCATTGGAAGTTCCACAAGCAGCAGAAGGACCACATATTGCCAAAGATG
TTGATTGTCCATCATATTTGTGTAATGGAAAACCAGATGGAAATTTCGAA
TACAGACCATATTCTGGATATGTCAAAAACCAATTCGTTCAATGTGTTGA
TGGAAAACCTTCATGTCAAGTTTGCTGGCCAAAGAATCTTGAATTCTCGG
AAAAATGCAACCAATGTCTATACAGTGCTCATGATGAATGTGTGTCGACT
GTTGCATTCAGCCCTGCTGTCACCTCATTCTGTCCTGACAAATGCCCACA
CCGTGGACCAAAATTCAGTGGAAACATTGCTGACTCAGACAACAACAAAC
ATTACATTGCATGCTGGGAAGGTGTGACTGTTGGTTGTGTTGATTGTCCA
AAAGGATTGTTGTTCAACGAACAATGGAATGCATGTTTATACAACGGAGT
ACACATCACCAAACCTGGATCCCACTAAGCCGTTTCAATGGCATTGGAAG
TTCCACAAGCAGCAGAAGGACCACATATTGCCAAAGATGTTGATTGTCCA
TCATATTTGTGTAATGGAAAACCAGATGGAAATTTCGAATACAGACCATA
TTCTGGATATGTCAAAAACCAATTCGTTCAATGTGTTGATGGAAAACCTT
CATGTCAAGTTTGCTGGCCAAAGAATCTTGAATTCTCGGAAAAATGCAAC
CAATGTCTATACAGTGCTCATGATGAATGTGTGTCGACTGTTGCATTCAG
CCCTGCTGTCACCTCATTCTGTCCTGACAAATGCCCACACCGTGGACCAA
AATTCAGTGGAAACATTGCTGACTCAGACAACAACAAACATTACATTGCA
TGCTGGGAAGGTGTGACTGTTGGTTGTGTTGATTGTCCAAAAGGATTGTT
GTTCAACGAACAATGGAATGCATGTTTATACAACGGAGTACACATCACCA
AACCTGGATCCCACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034860XLOC_034860Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055332-proteinTCONS_00055332-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055332-exon-scaffold_253-1491911889:270995..270999TCONS_00055332-exon-scaffold_253-1491911889:270995..270999Clytia hemisphaericaexon
TCONS_00055332-exon-scaffold_253-1510915933:270995..270999TCONS_00055332-exon-scaffold_253-1510915933:270995..270999Clytia hemisphaericaexon
TCONS_00055332-exon-scaffold_253-1575043694:270995..270999TCONS_00055332-exon-scaffold_253-1575043694:270995..270999Clytia hemisphaericaexon
TCONS_00055332-exon-scaffold_253-1491911889:271156..271395TCONS_00055332-exon-scaffold_253-1491911889:271156..271395Clytia hemisphaericaexon
TCONS_00055332-exon-scaffold_253-1510915933:271156..271395TCONS_00055332-exon-scaffold_253-1510915933:271156..271395Clytia hemisphaericaexon
TCONS_00055332-exon-scaffold_253-1575043694:271156..271395TCONS_00055332-exon-scaffold_253-1575043694:271156..271395Clytia hemisphaericaexon
TCONS_00055332-exon-scaffold_253-1491911889:280445..280701TCONS_00055332-exon-scaffold_253-1491911889:280445..280701Clytia hemisphaericaexon
TCONS_00055332-exon-scaffold_253-1510915933:280445..280701TCONS_00055332-exon-scaffold_253-1510915933:280445..280701Clytia hemisphaericaexon
TCONS_00055332-exon-scaffold_253-1575043694:280445..280701TCONS_00055332-exon-scaffold_253-1575043694:280445..280701Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:270995..280701 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.271234 0.463016 0.144448 0.0451161 0.605003 0.179465 0.311346 0.180583 0.113476 0.0141707 1.07052 0 4.41097 5.31628 2672 679.67 0.336018 1.55557 2.13205 0.389308 0.130197 0 0 0 0 0.384367 1.16042 0 0 0.0153524
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055332 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top