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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055329 ID=TCONS_00055329|Name=TCONS_00055329|organism=Clytia hemisphaerica|type=transcript|length=2049bp
GTCGTATATTATAAACGAAGACTAtaacttgaagaaaatttttgcatAGT
CATCCTACATTTCATAATTTGTATTTTGATTATTGGgtattgaaatttca
aagatcttcaaaagatttttgttatttttgaaaacaagaaatattTAAGA
TATTGAATGAACTGGAACTTAACCGTACatgaaaattcaacataaaaaat
ATGATAGATGAAAATTTTGTATGTCAGCCATTTTAGATGAAACTCTTGGA
GGCATGGATTAAGAAGAGAACAAAACATCCGACACCGATTCAAACCATCA
AACTTGTTATGTTTGGTTCTGGGGGAGTTGGGAAAACATCGCTGGTACAT
CGTTTCTTATTCAACAAATTCGATAGCGCATATACAGCCACGGTAGAAGA
TGACTACCGTGAAGTCATCACGTACAACAAACATATTGTGGACGTCACTG
TTCTAGATACGTCTGGTAGTTTCCAATTCCCGGCTATGAGACGTCATGCG
ATACAACACGGACATGGTTTTATCATAGTATACGCCGTTGATAATCCAAA
TTCTTTAGAAGAAGCTAAAAGACTCTACAATGAAGTTATAACGTGTAAAA
ATGACGTTGATTGTCCCATTGTTTTAGTTGGGAATAAAATCGATAAAAGT
CCACTAGGGAACCGTAAGGTCTCCAGAGAACAAGTTAATAAGATACTTCT
AAATGATTCCATGAATGTTGAACATATAGAGACCTCAGCTAAAATCAACC
ATAACGTATCACTGGTGTTTAATAAACTTATTGGATTTATAGACGAAAGG
AATATGGCGAATCTATCAACTTCAATATCACCCAATAAAAGCAGTAACTT
AAGTAAATCTACCATGCGATTGAACTCCATGTCAAAATATAGTTTGAATT
CTAAATCGACGTATAATTTACAACGTTCACTCTCATTGGACAATCATTTG
GATACTGTTCAAGAAACacgaaaaacgaagaagaaattgttgaaaaaatt
cttttcatctaGAGGGAAAACTGTGAGATAACacaatttttaatatttct
tctttttttgttggTATCTGATGTCAGATTCGTATAATTGAGATCCCAGA
ATGGTTTACAACACAAAAACGTTTCTGGAACAAAATGTATCATTACTTAT
TCTCAATTCTCGTTCTAGCTTCATTAGTGGCTTTGATTTGTTTCGAAACC
ATGACCGTAtttgacacccctgtgtcacagacccggtaagcCTATTGGAA
ATCTGATCAAAATGTCGTCCGCAGTGGGGAAAATATCCCAcattttcagc
cccactggaaaatgaCTGTCTTTATTCCCATttaaaattctatgaaaaaa
aatccaaaatcatCCTTATTGAATTTTTcgaccttggaacaatagaattt
ctttaTCCCATTGGGATTTGGTTAGCAACCCCACAATAGAactttcaccg
gggctgtgagacaggggtgttattttcctttttcaaaatgttgaaagttt
ttctaaaaataaatttttggttACTTTTTACCAAAAGTTTACCAGAGAAC
TTGAGATATGTTTTATATCCAATTTCCTCAGTATGGTCAACGACTGTATT
TCGACATGAAGGTatcataaagttttgaaatataatagatAGTATATCGA
TGAATTACAAAactaaaaccaaaattttaatcatattattattattattc
agaACCCCAATTATTTATATAAGATATTATTCATAGTTGTTTATAATTAT
ATACTAAAATTAATCTCCCTCTTGTACATTTTAagtatttaaattatttt
aaaataaaagtattcCATACAGATATAGTAGACAATCACCATGAGTTATA
TGTGTATGAGTCATTAGGTGACGGTTGGGGCGGGGCACTCAATTGTGAGT
TATCCGGAGGCAGCCGGGGGCGGGGCACTCGATCTGGAAACGAACGTATA
TGCAAATAAAGGGTTTACGGCTCAAAAATAGACCCTTACAGTACAGAGAA
AAATCAATAGAAAACCCtaagtgtattaattttggcgggtatttaattt Run BLAST on NCBI transcript from alignment at scaffold_253:186571..191676+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055329 ID=TCONS_00055329|Name=TCONS_00055329|organism=Clytia hemisphaerica|type=transcript|length=5106bp|location=Sequence derived from alignment at scaffold_253:186571..191676+ (Clytia hemisphaerica)
GTCGTATATTATAAACGAAGACTAtaacttgaagaaaatttttgcatAGT
CATCCTACATTTCATAATTTGTATTTTGATTATTGGgtattgaaatttca
aagatcttcaaaagatttttgttatttttgaaaacaagaaatattTAAGA
TATTGAATGAACTGGAACTTAACCGTACatgaaaattcaacataaaaaat
ATGATAGATGAAAATTTTGTATGTCAGCCATTTTAGATGAAACTCTTGGA
GGCATGGATTAAGAAGAGAACAAAACATCCGGTAAGGAAACGCACAAATA
TTTGTCGCCAAATTTTTCCGGGCACTCTTCTTTTTTAATGCCGAATCTTT
TCAAACACTTCTTCTTTGTGTCGAATTTTTCCAGGCAGTCTTATTTTCAT
GTCTTTTTTATTATgtctttttatgagaacaaactatataagaacataag
tcttcgatagccaaaataaaaagaacatttttatgtctttttttataacT
TAGAAATGCATTAGAGATTACAAAAGCTTAAACGTTGTTTAGGAAGCGTG
GTTTTCTTATTAACGGGGACAACGTTTTAGCCAGTTTTGTCAACGGGCTC
CTGCCACTGGGTCTGTGACGGAGTCGTAGACGTCTTTCGAATCTAATAAG
GCCTTTGTACAGGAATTTATAAAACTGCACTTTAATAGGTGTCACCAAGT
TTTTATCATCACAAACTTGGAAGGCTTTGAAATgatttttccagaaaatt
tttcaacatttacaGTATTACTGTCACTCTGACAATGCTTTTGTTGTGAA
GCGAAATATTAGTTTAAAAAGGACGGAAATTTTGTTGCTTTTCATCTGTA
ATAGATAAGACATGATCAACCTAAATATGATTATTCAAGTTTTAAAAAGA
TCATGGATTTTCGATTCGTATTCTCTCGATAATCAAAGAATGATATGGAA
ATGTGAATTGAacagaaattttggatttttatattGTGACCCTAGGTCAg
gtcaacaatattttttttctatttatgaTTGGGGATATTTGAGCTTCTGA
TCAATACGGGTATAATTACATCCGTTTTTTCGAGATAGTTCTAGTGATCA
CATTCCAGGAATATTCATAAattattgtttttcaaataaTCTTAAGTTTG
CTAGCTGTTTGATGAAATAAGCGTTCTCATATTCAAAAAATTAGCTCCAG
GGTTAAGTTTTAAAAGCCTGAATCTTTTGGATCTTTGACCATATTTGGCA
TTACTGTAAATATTTTAGGAATATTCAGTGAATCCTTGATATTTATAACT
TGAAAAACCAGTTCACTGTTTTTGAACCTTTTTTACCCCTACTTTCTCTG
CCTTGAATTTTTCATGAAGATTTattttataaagattttattGAGACCTT
TGCTTTTAAAGTTACACCATTCTTGTATAACATTCATACTTTGGTTTCTA
TGGTGACTTTCGTTTtgataagtgttcccgtttcatatcagacacatttc
atatcgggacagtgtcttgctattgtgatattatgctgatatacgcaaaa
aattgcttttctttccatctttctgaccaatcttgctccacatccgtgtc
taTCTAatgcgaaaaagcttgtgaattaaaattgacgagtaagcaaatga
tatcactcttatttaaaaacaaaaccatttAAGTGAGCTTGCTTGACAAC
TAGGTCAACTGAACATTAAACTAGGGTAGTATTTTGctggtttttttttc
agaactGGGGGTCCAAAGATTTTTGCAAAGAAAGCTCATTTTATCAGCTT
TGTTTGGTCAAACGAATAACTTTTGTTGTTCTGATTAATAGTAAACTCGT
TACCCTTTGGCCACTTTCAGAAAGTCACAGGGCAACAAATAATCTGAAAA
CCAGTTTGTATGTAGATgggttttttatttgaaagaggattttcttcatc
aaataTTGCTCAAAAAATTACGTGTCAATTAGAAAACTGACGTCAGTATC
TGTCTTATAAAAGATTACGCAAGGATTACTCAGACGTGACTTCGTTACAC
CGTGGGGTACGTGTTGGTTTAAGAAGGGGCTAGAATAAAAAACAAGTCAC
CACAAACCTTCAGAAGTAATTCCCTCGGTGACtgaaaaacaaaatgtaaa
aaaattcacattttttGTATAAGCAACCAGGTTACTAAGGCTCTAGTCAG
CCAATTTTTCATCAAGTcgtaaagaaaatctttttagataatttaactAA
AAACTATGGTAAACAATCGCCAATGGCCCAATTTAGCATAAATATAATTT
AGGATGTGGCTACCTGGCAAGAAAGTTTGTCAGAGATTAGCGTAGCCTCT
AGTCCTGAGTCCAAATTCAGaattgcttataagaaaaaatggTGTACACC
AACAGAGCCTCCTGTTTACAAATGACGTCAATGTTTTTTGTCCATTTGAG
AATTTGTAGCCGCCAACTCACAGGAATCattgaaaatgatgaaattttta
aaaagtcaaagaaacgtgtgattttttgttttgaatatttgaGTGAGTCT
CGGATATCAAGctatttttcttgtttcagGCGCTTTAACATTTATAAGAA
TTCTAAATTTAACTTTAGCGTATTTTCTAAAGTTTGCCCTATAGCTGATT
TTGAAGGGTTTTCAGAGTTTAATTTTTTACGAactctttctcaaaaaagg
aaGAGTTTTACGTTTTTGAAAGATATTAAAAGACATTCTGCAgtactctt
ataaaaaatttggaaatatatttcccttaacaatttcttttttctttttc
gccaacctacaaagtaaaaaatcaactatatttttatcaaaacaaagaag
aaaatcaaagcCTACTCAGTCAttcttctttttccaaaatatttctgaaT
TATTTACTGGTGGTCATGCAGTTCTAAACGGTCCTTCAGTCATCTAAAGG
TCCATATAAAAAGACGCTTCggttttaaaaatattcatttttcaaatttt
tataaatgaaaGGAAGTCAAATCATTTTCAGCGTTGTAGTCTTGATAAAA
TTTATGTGCACAATGGGTATACAATTTCGAAGTCCTAGAAAGGGTAGAGC
TCAAAAAATTCAGGTATTAGAATTAGAATTCTTATGTACGTCTATTTTGG
TCATTTCGTCATTACTATAATTCAAACTAATTCTTAGTTCCCGTCGAAGG
GGAAACCCTAATAAAACCTTCTCTATTTCTAAgtctctctgtaattcaaa
cagattggattcgaattagagagagttaatTGCATTAATTCTTTCTTGAT
TCTTAATAGAATAACATTTTATATCTTTCCTTTCTTAGACACCGATTCAA
ACCATCAAACTTGTTATGTTTGGTTCTGGGGGAGTTGGGAAAACATCGCT
GGTACATCGTTTCTTATTCAACAAATTCGATAGCGCATATACAGCCACGG
TAGAAGATGACTACCGTGAAGTCATCACGTACAACAAACATATTGTGGAC
GTCACTGTTCTAGATACGTCTGGTAGTTTCCAATTCCCGGCTATGAGACG
TCATGCGATACAACACGGACATGGTTTTATCATAGTATACGCCGTTGATA
ATCCAAATTCTTTAGAAGAAGCTAAAAGACTCTACAATGAAGTTATAACG
TGTAAAAATGACGTTGATTGTCCCATTGTTTTAGTTGGGAATAAAATCGA
TAAAAGTCCACTAGGGAACCGTAAGGTCTCCAGAGAACAAGTTAATAAGA
TACTTCTAAATGATTCCATGAATGTTGAACATATAGAGACCTCAGCTAAA
ATCAACCATAACGTATCACTGGTGTTTAATAAACTTATTGGATTTATAGA
CGAAAGGAATATGGCGAATCTATCAACTTCAATATCACCCAATAAAAGCA
GTAACTTAAGTAAATCTACCATGCGATTGAACTCCATGTCAAAATATAGT
TTGAATTCTAAATCGACGTATAATTTACAACGTTCACTCTCATTGGACAA
TCATTTGGATACTGTTCAAGAAACacgaaaaacgaagaagaaattgttga
aaaaattcttttcatctaGAGGGAAAACTGTGAGATAACacaatttttaa
tatttcttctttttttgttggTATCTGATGTCAGATTCGTATAATTGAGA
TCCCAGAATGGTTTACAACACAAAAACGTTTCTGGAACAAAATGTATCAT
TACTTATTCTCAATTCTCGTTCTAGCTTCATTAGTGGCTTTGATTTGTTT
CGAAACCATGACCGTAtttgacacccctgtgtcacagacccggtaagcCT
ATTGGAAATCTGATCAAAATGTCGTCCGCAGTGGGGAAAATATCCCAcat
tttcagccccactggaaaatgaCTGTCTTTATTCCCATttaaaattctat
gaaaaaaaatccaaaatcatCCTTATTGAATTTTTcgaccttggaacaat
agaatttctttaTCCCATTGGGATTTGGTTAGCAACCCCACAATAGAact
ttcaccggggctgtgagacaggggtgttattttcctttttcaaaatgttg
aaagtttttctaaaaataaatttttggttACTTTTTACCAAAAGTTTACC
AGAGAACTTGAGATATGTTTTATATCCAATTTCCTCAGTATGGTCAACGA
CTGTATTTCGACATGAAGGTatcataaagttttgaaatataatagatAGT
ATATCGATGAATTACAAAactaaaaccaaaattttaatcatattattatt
attattcagaACCCCAATTATTTATATAAGATATTATTCATAGTTGTTTA
TAATTATATACTAAAATTAATCTCCCTCTTGTACATTTTAagtatttaaa
ttattttaaaataaaagtattcCATACAGATATAGTAGACAATCACCATG
AGTTATATGTGTATGAGTCATTAGGTGACGGTTGGGGCGGGGCACTCAAT
TGTGAGTTATCCGGAGGCAGCCGGGGGCGGGGCACTCGATCTGGAAACGA
ACGTATATGCAAATAAAGGGTTTACGGCTCAAAAATAGACCCTTACAGTA
CAGAGAAAAATCAATAGAAAACCCtaagtgtattaattttggcgggtatt
taattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055329-exon-scaffold_253-1491911889:186571..186851 | TCONS_00055329-exon-scaffold_253-1491911889:186571..186851 | Clytia hemisphaerica | exon |
| TCONS_00055329-exon-scaffold_253-1510915933:186571..186851 | TCONS_00055329-exon-scaffold_253-1510915933:186571..186851 | Clytia hemisphaerica | exon |
| TCONS_00055329-exon-scaffold_253-1575043694:186571..186851 | TCONS_00055329-exon-scaffold_253-1575043694:186571..186851 | Clytia hemisphaerica | exon |
| TCONS_00055329-exon-scaffold_253-1491911889:189909..191676 | TCONS_00055329-exon-scaffold_253-1491911889:189909..191676 | Clytia hemisphaerica | exon |
| TCONS_00055329-exon-scaffold_253-1510915933:189909..191676 | TCONS_00055329-exon-scaffold_253-1510915933:189909..191676 | Clytia hemisphaerica | exon |
| TCONS_00055329-exon-scaffold_253-1575043694:189909..191676 | TCONS_00055329-exon-scaffold_253-1575043694:189909..191676 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:186571..191676 + |
Blast
BLAST of TCONS_00055329 vs. Swiss-Prot (Human)
Match: DIRA2 (GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIRAS2 PE=1 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 3.205e-41 Identity = 75/171 (43.86%), Postives = 111/171 (64.91%), Query Frame = 3
Query: 300 KLVMFGSGGVGKTSLVHRFLFNKFDSAYTATVEDDYREVITYNKHIVDVTVLDTSGSFQFPAMRRHAIQHGHGFIIVYAVDNPNSLEEAKRLYNEVITCKNDVDC-PIVLVGNKIDKSPLGNRKVSREQVNKILLNDSMNVEHIETSAKINHNVSLVFNKLIGFIDERNMA 809
++ +FG+GGVGK+SLV RF+ F +Y TVED YR+VI+ +K I + + DT+GS QFPAM+R +I GH FI+VY++ + SLEE K +Y ++ K DV+ PI+LVGNK D+SP +R+V + L + +ETSAK+NHNV +F +L+ R ++
Sbjct: 9 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP--SREVQSSEAEA--LARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVS 175
The following BLAST results are available for this feature:
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