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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055323 ID=TCONS_00055323|Name=TCONS_00055323|organism=Clytia hemisphaerica|type=transcript|length=730bp
AAATGTGTTACACATAGCCAGATAAATCAAGGGCTTATAAAATCAGCAAA
TACGCAAAATCATTTTGACCCCTCCCTCTTATTTAAATGTAGCCAAAACG
TCCTCTCAAATTTGCACACCTATTAGAAATGCTACAAATTCATCAATAAA
CATTGAAGCCCTATAAAAACCGAACTTAGAAACCTACAAATCATTCATTC
AACAACATCTCAAGCATACAGTATAACTCAAGATAAGAAATCAAACAGAA
ATCAATTCATCATGTCTCGGATTATGTTGGCAGTTATTCTATTCTCGGCT
GTTTTCTACTCAATCGAATGCATCACATCAGGTGGAAGTGCCCTAGTTGG
TAAACGCGATACCATGGAATTATTGAAATCCTCAGATATGCTGATGGACG
ACAAAACTTACTCCTATTTGGTCAAGAAAAGAGTTGTCAACGAGTTGAGa
agtttgaaaaacaaaatggtCAACGTCATGAAAGAATACGAGAAATTACG
ACGTGACGAAGAATTGTTCTAAACACTGAAATATTGAACCAAAAAATTTT
CAcgctattttaaaatttatagtTTAATAGAAATTCAATTAGTTTTATAT
ATCTGTATGTCTTCTCGAATTTAAATTGTAATGTTGAAATATATATGTGT
GTATGTTTACAGAAAATCACTCGAGTTTACTATATCCCCACCTTTAGAgt
ttaattaaatatttcccgttttccaaaagg Run BLAST on NCBI transcript from alignment at scaffold_253:147002..148676+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055323 ID=TCONS_00055323|Name=TCONS_00055323|organism=Clytia hemisphaerica|type=transcript|length=1675bp|location=Sequence derived from alignment at scaffold_253:147002..148676+ (Clytia hemisphaerica)
AAATGTGTTACACATAGCCAGATAAATCAAGGGCTTATAAAATCAGCAAA
TACGCAAAATCATTTTGACCCCTCCCTCTTATTTAAATGTAGCCAAAACG
TCCTCTCAAATTTGCACACCTATTAGAAATGCTACAAATTCATCAATAAA
CATTGAAGCCCTATAAAAACCGAACTTAGAAACCTACAAATCATTCATTC
AACAACATCTCAAGCATACAGTATAACTCAAGATAAGAAATCAAACAGAA
ATCAATTCATCATGTCTCGGATTATGTTGGCAGTTATTCTATTCTCGGCT
GTTTTCTACTCAATCGAATGCATCACATCAGGTGGAAGTGCCCTAGTTGG
TAAACGCGATACCATGGAATTATTGAAATCCTCAGATATGCTGATGGACG
ACAAAACTTACTCCTATTTGGTCAAGAAAAGAGTGAGTTAGATTTTATCA
ATTTCGTACCAGACCCCCTTGCaccaattttcgaatttttgattttacga
ACTTTTGTGAGTGTTATTTGAAACTTctctgtctcacagcctcggtggaa
cttttttcttcagtggggataaaaattcctattgaaattccaatggggat
agcaATTCTATAGtccaaaggttaaaaaaaatctagtggggttggttttg
gagtgcaatttttaaacattgaattttgagtggggatgaaatcaaagtct
cagggtattttcccaccggggacgaaattttccagtggggctggggttcc
AGCGGGACAAAGAAATGTTTTGAATCATGAAAGCGAACCAAGGGGGttca
aattttagtttttactaattttcaagaaagATTTCAGACCTGTGGTCTAA
AAACTACCTATTAGAAAAAATTCGATTAAATCAATTTAATCCCCATTGCC
ATTGGAAAAATGTACTGTAATCCCATCTCGACTAGATCCTTCTCATTAAA
AGCTGGTAAAACATTTCTCAAGTAGTCatcgagacaggggtgtttatttt
TATATGATTATGACCCAAAGATTTTAATAACGTCCCATGGATCCTTTTTT
CCTCTTATATGCATGCCCTTTAATAAAGTGTCTCCCTTTTCTTAGTTTTT
TAGCACTTTTCCTCACATTCCACCTTCGTTTATGTAGGAAACCTAGGTAT
AAGTTGAACAATCagcttaaaaatgattttaatatgTTCTTCTCACCATT
TTGAGCgaaagaaatgttcttaaattttgctcGCCATCGAAtccttctgt
tcttataaagtttgttcttatacaaaaaaacgTGTTAAATCTAATCTCTA
ATttgtcttttgtttctttcacaGGTTGTCAACGAGTTGAGAAGNAATCT
CTAATTTGTCTTTTATTTCTTCTACAGGTTGTCAACGAGTTGAGaagttt
gaaaaacaaaatggtCAACGTCATGAAAGAATACGAGAAATTACGACGTG
ACGAAGAATTGTTCTAAACACTGAAATATTGAACCAAAAAATTTTCAcgc
tattttaaaatttatagtTTAATAGAAATTCAATTAGTTTTATATATCTG
TATGTCTTCTCGAATTTAAATTGTAATGTTGAAATATATATGTGTGTATG
TTTACAGAAAATCACTCGAGTTTACTATATCCCCACCTTTAGAgtttaat
taaatatttcccgttttccaaaagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055323-exon-scaffold_253-1491911889:147002..147433 | TCONS_00055323-exon-scaffold_253-1491911889:147002..147433 | Clytia hemisphaerica | exon |
| TCONS_00055323-exon-scaffold_253-1510915933:147002..147433 | TCONS_00055323-exon-scaffold_253-1510915933:147002..147433 | Clytia hemisphaerica | exon |
| TCONS_00055323-exon-scaffold_253-1575043694:147002..147433 | TCONS_00055323-exon-scaffold_253-1575043694:147002..147433 | Clytia hemisphaerica | exon |
| TCONS_00055323-exon-scaffold_253-1491911889:148379..148676 | TCONS_00055323-exon-scaffold_253-1491911889:148379..148676 | Clytia hemisphaerica | exon |
| TCONS_00055323-exon-scaffold_253-1510915933:148379..148676 | TCONS_00055323-exon-scaffold_253-1510915933:148379..148676 | Clytia hemisphaerica | exon |
| TCONS_00055323-exon-scaffold_253-1575043694:148379..148676 | TCONS_00055323-exon-scaffold_253-1575043694:148379..148676 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:147002..148676 + |
Blast
The following BLAST results are available for this feature:
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