|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055304 ID=TCONS_00055304|Name=TCONS_00055304|organism=Clytia hemisphaerica|type=transcript|length=3156bp
CGATTTTCCCGACTTTCGCTCGGCCTACCGGGTACTTGTCCAAacaaaaa
atgacgtaatctttgaTTAACAACAAAATGGCGGAGGCAAATGCAGGAGA
TGCAGACCCACAGAACTTCTTTCAAAACCTCGTAAACTTTACACAGGAAA
TCATTAACCTTGATGACAATCTCGATTTGCTTGAGAATACTCTGTCGAAG
TGTGAAGATTATTTTAAAGTATTGAACTTCATCAATGAAAATCTATTGCA
AGCAGAAGATAATGAGGATCCTGAGGAACTACACCCAATTGCAGCAGGAG
CGTTATTACAATGGACAAATCGAGCCAACGTCaatattgtcacttttttc
acaGGATTTCTTCGCTTTTAAACGACCTCATTAACAATCATTTTGAAAGT
GATGGGATGACTTGTCCTAAAGTATATACTGGAAACCTTGGTCAGCCAAA
ATACGAAATATCGAAAGAACAAATTGAATATCTCAgagatcttcattttt
cttggaCCAAGATAGCTGAGCTACTTGGTATTTCTCCTAAAACACTTTCA
AGAAGAAGAAATGAACTTAGAATTCAAAATCACAGAGATTTTACTGATAT
AAATTATGAAAACCTTCGTGCTGAAATGGAAAGTATCAGAGAGCTTACAC
CTAATATTGGACAAACTAGAATGTTGGGGGCTTTAAGGGCGCGCGGTATT
AATGTCCAAAGATGGAGAGTTCGAAATTTACTGAGAGACATTGACCCACA
AGGAACAATAATGCGATGGAGGACTACAACTAAGAGGCGCAAGTATAACG
TAAAATATCCAAATTCGCTGTGGCACATTGATGGCAACCACAAGATGATA
AAATGGCGGTTTGTGGTACATGCTTGCATTGATGGTTTTTCCAGGTTGAT
ACCATATTTGTATTGTGCAAATAACAACAAATCAGACACTGTATTAAATC
TTTTCCAGGATGCATCTCAAAATTATGGGCTGCCGTCTAGAGTTCGAGCT
GACTATGGTCTAGAAAACGTCGGTGTTGCAAGAATGATGGTGGAAACACG
AGGCCCTAATAGAGGTAGTATGATCACTGGTAGCTCAGTTCATAACCAGA
GAGTAGAACGTTTACATCGGGATGTAACTACTGGAGTTCTTCGAGCCTAT
ATAAATTTGTTTCAAGATATGGAATCTGATGGAATTCTCGACCCACTAAa
tgaaattcatattttttgtttacatttggtgtTTCACAATGAAATAAATA
GATCATTGAGTGAATTTGTCCTTCAATGGAATCAGCATAGTCTTAGCACA
GAACATAACAGTTCACCCTTGCAGCTCTGGACCGCCGGACTATTACGTAA
TTCCAGGGCTagacatcagattttgaatgaCATTCCTGTTGAAGGTTTAA
TGCTATTTGGAACAGAAGGAGATGTTGATTCAgtcattgaagatgaagat
tATGAGGTTAATGTTCCAAGAATTAATTTGCCTTTGACTCATGATCAAAT
TCATCACATTATGGAAAATGTCCCGCAAAATATTCCAAGGAATGACAGGG
TTCATGCTTACATTAACATTGTTCAAATGGTGgaaaatatgttaatttga
attttatctTCTCTCAATTAAGTACTTTGATGTCAGTTTTCAGGCttatt
tcttggcaaaatttaAATATAGTAGAAATGTCAATATCATAAGTCTTTAG
TgcaaaattgtattttatcaAAGGAGCGTTGTagtaaaaatcacttttat
acACCACAAATATATACATAATTTCCaggtattaaaaaaaattaaaaatt
ctaatATCTATTTGAAATTGCTGAGAATAGGAGTTTTTTAGAGATTGAAa
gttgatatttgtttttccatttttcctgTAAAAAATGGTTTTGTATGACC
AATGCTATATTGTCATTTTTGTGTGCTTTTACATTTTCATAGTAGTCCAG
AAAAAACCAGAACAATCCATAATGGAGCTGTTTACTATCCTCTACATCTT
TCAATAATAGATATGAAAGTCTCATTACTAATATTATGAAAGTCAGTAGC
GTTCTCAGGGGTGCCGGAAAGAGTCTGAATGATctacttttagaaaaaaa
agccAAGCGAGCGAAGAGAAAATTGTACCCGGCAAAGAATGGAACCGTCG
ACGTTAAAAGTGACACAGAGAGTGCAAGTACCGATAGTTCGAGCTCAAGC
GAGTCTGAAGATGATAGCAAACTTGCCGAAAAGAGACATGGGGTTATACC
GCCGACCCATTCTGTCAGCCAAAGAGAGGTGAGCGACCCGTTAATTGAAG
ATGGAATCGATGTCCAAGAGGTTGAGGTGGTAACGTCAAGCAACAAGAAG
AAACGCAAGTCGAAGTCTAAAGAACCGTCCGTTGTCAGCAACAAGTCAAA
TGTTGAAGAATCTGGTGATATCGGGGAAAGCAAAGACGTCGAGGCTCTCA
TTAAGAAGAAAAAACGCCGGAAATCGAAGGCTGTTACGGTAGAAGACGAA
CCAGCTGCCGTGGAATCATCTAATGATGCCATCAATGCAACTGataacaa
aaagaagaaaagaaagtcgAAAAACTAACAATTGTTTATGAGACTCATCA
CAAGGTGACTACTCTTTATCGTCCATTTACGATTTAACAAACAGTCGCAT
TGCTAAAGTGAAAGAGAACGTAGAATACAGTTCTGTTTGATGAAGATGAA
AGGAAAGTTTTTTGCCTGATAGACAGAACACTGTTCATAGATTGTACCAC
CGGGTGTCCTGTTTGCATTACACCCTTCTTTCGTTacgtatttttcattt
ttctagatTTATACGCGAGTGTAAGTTtaaacttttgttttatttgtagT
TCTTTATTTAAGCAGGGATATCCCTGATTTAAGCACGCTCATTTCATTTA
GTTGTCTTTAGATGATCTTTTGTTCTCATTAAAGAAACTTACAGTTCTTC
CGATGTTACAAACTTTCAATTAACTCTGCGACAAAAGATAAAATGCCCTC
GTCTACCTCAGAAATCCCCGAGAGCCCTACGAACACTTCGAACTTAGTGA
CCGAGTGGTCTAAGCGTCCGTGTAGCAAGCATGGGGTACTGAGTTCGAGC
CCATCCCATGGTTACatcatttttaacaatttcactATATTTCATGTTTT
CGAGGG Run BLAST on NCBI protein sequence of TCONS_00055304-protein >TCONS_00055304-protein ID=TCONS_00055304-protein|Name=TCONS_00055304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=429bp
MDKSSQRQYCHFFHRISSLLNDLINNHFESDGMTCPKVYTGNLGQPKYEI
SKEQIEYLRDLHFSWTKIAELLGISPKTLSRRRNELRIQNHRDFTDINYE
NLRAEMESIRELTPNIGQTRMLGALRARGINVQRWRVRNLLRDIDPQGTI
MRWRTTTKRRKYNVKYPNSLWHIDGNHKMIKWRFVVHACIDGFSRLIPYL
YCANNNKSDTVLNLFQDASQNYGLPSRVRADYGLENVGVARMMVETRGPN
RGSMITGSSVHNQRVERLHRDVTTGVLRAYINLFQDMESDGILDPLNEIH
IFCLHLVFHNEINRSLSEFVLQWNQHSLSTEHNSSPLQLWTAGLLRNSRA
RHQILNDIPVEGLMLFGTEGDVDSVIEDEDYEVNVPRINLPLTHDQIHHI
MENVPQNIPRNDRVHAYINIVQMVENMLI Run BLAST on NCBI transcript from alignment at scaffold_252:7846..11001 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055304 ID=TCONS_00055304|Name=TCONS_00055304|organism=Clytia hemisphaerica|type=transcript|length=3156bp|location=Sequence derived from alignment at scaffold_252:7846..11001 (Clytia hemisphaerica)
CCCTCGAAAACATGAAATATagtgaaattgttaaaaatgatGTAACCATG
GGATGGGCTCGAACTCAGTACCCCATGCTTGCTACACGGACGCTTAGACC
ACTCGGTCACTAAGTTCGAAGTGTTCGTAGGGCTCTCGGGGATTTCTGAG
GTAGACGAGGGCATTTTATCTTTTGTCGCAGAGTTAATTGAAAGTTTGTA
ACATCGGAAGAACTGTAAGTTTCTTTAATGAGAACAAAAGATCATCTAAA
GACAACTAAATGAAATGAGCGTGCTTAAATCAGGGATATCCCTGCTTAAA
TAAAGAActacaaataaaacaaaagtttaAACTTACACTCGCGTATAAat
ctagaaaaatgaaaaatacgtAACGAAAGAAGGGTGTAATGCAAACAGGA
CACCCGGTGGTACAATCTATGAACAGTGTTCTGTCTATCAGGCAAAAAAC
TTTCCTTTCATCTTCATCAAACAGAACTGTATTCTACGTTCTCTTTCACT
TTAGCAATGCGACTGTTTGTTAAATCGTAAATGGACGATAAAGAGTAGTC
ACCTTGTGATGAGTCTCATAAACAATTGTTAGTTTTTcgactttcttttc
ttctttttgttatCAGTTGCATTGATGGCATCATTAGATGATTCCACGGC
AGCTGGTTCGTCTTCTACCGTAACAGCCTTCGATTTCCGGCGTTTTTTCT
TCTTAATGAGAGCCTCGACGTCTTTGCTTTCCCCGATATCACCAGATTCT
TCAACATTTGACTTGTTGCTGACAACGGACGGTTCTTTAGACTTCGACTT
GCGTTTCTTCTTGTTGCTTGACGTTACCACCTCAACCTCTTGGACATCGA
TTCCATCTTCAATTAACGGGTCGCTCACCTCTCTTTGGCTGACAGAATGG
GTCGGCGGTATAACCCCATGTCTCTTTTCGGCAAGTTTGCTATCATCTTC
AGACTCGCTTGAGCTCGAACTATCGGTACTTGCACTCTCTGTGTCACTTT
TAACGTCGACGGTTCCATTCTTTGCCGGGTACAATTTTCTCTTCGCTCGC
TTggcttttttttctaaaagtagATCATTCAGACTCTTTCCGGCACCCCT
GAGAACGCTACTGACTTTCATAATATTAGTAATGAGACTTTCATATCTAT
TATTGAAAGATGTAGAGGATAGTAAACAGCTCCATTATGGATTGTTCTGG
TTTTTTCTGGACTACTATGAAAATGTAAAAGCACACAAAAATGACAATAT
AGCATTGGTCATACAAAACCATTTTTTAcaggaaaaatggaaaaacaaat
atcaactTTCAATCTCTAAAAAACTCCTATTCTCAGCAATTTCAAATAGA
TattagaatttttaattttttttaatacctGGAAATTATGTATATATTTG
TGGTgtataaaagtgatttttactACAACGCTCCTTtgataaaatacaat
tttgcACTAAAGACTTATGATATTGACATTTCTACTATATTtaaattttg
ccaagaaataaGCCTGAAAACTGACATCAAAGTACTTAATTGAGAGAaga
taaaattcaaattaacatattttcCACCATTTGAACAATGTTAATGTAAG
CATGAACCCTGTCATTCCTTGGAATATTTTGCGGGACATTTTCCATAATG
TGATGAATTTGATCATGAGTCAAAGGCAAATTAATTCTTGGAACATTAAC
CTCATaatcttcatcttcaatgacTGAATCAACATCTCCTTCTGTTCCAA
ATAGCATTAAACCTTCAACAGGAATGtcattcaaaatctgatgtctAGCC
CTGGAATTACGTAATAGTCCGGCGGTCCAGAGCTGCAAGGGTGAACTGTT
ATGTTCTGTGCTAAGACTATGCTGATTCCATTGAAGGACAAATTCACTCA
ATGATCTATTTATTTCATTGTGAAacaccaaatgtaaacaaaaaatatga
atttcatTTAGTGGGTCGAGAATTCCATCAGATTCCATATCTTGAAACAA
ATTTATATAGGCTCGAAGAACTCCAGTAGTTACATCCCGATGTAAACGTT
CTACTCTCTGGTTATGAACTGAGCTACCAGTGATCATACTACCTCTATTA
GGGCCTCGTGTTTCCACCATCATTCTTGCAACACCGACGTTTTCTAGACC
ATAGTCAGCTCGAACTCTAGACGGCAGCCCATAATTTTGAGATGCATCCT
GGAAAAGATTTAATACAGTGTCTGATTTGTTGTTATTTGCACAATACAAA
TATGGTATCAACCTGGAAAAACCATCAATGCAAGCATGTACCACAAACCG
CCATTTTATCATCTTGTGGTTGCCATCAATGTGCCACAGCGAATTTGGAT
ATTTTACGTTATACTTGCGCCTCTTAGTTGTAGTCCTCCATCGCATTATT
GTTCCTTGTGGGTCAATGTCTCTCAGTAAATTTCGAACTCTCCATCTTTG
GACATTAATACCGCGCGCCCTTAAAGCCCCCAACATTCTAGTTTGTCCAA
TATTAGGTGTAAGCTCTCTGATACTTTCCATTTCAGCACGAAGGTTTTCA
TAATTTATATCAGTAAAATCTCTGTGATTTTGAATTCTAAGTTCATTTCT
TCTTCTTGAAAGTGTTTTAGGAGAAATACCAAGTAGCTCAGCTATCTTGG
tccaagaaaaatgaagatctcTGAGATATTCAATTTGTTCTTTCGATATT
TCGTATTTTGGCTGACCAAGGTTTCCAGTATATACTTTAGGACAAGTCAT
CCCATCACTTTCAAAATGATTGTTAATGAGGTCGTTTAAAAGCGAAGAAA
TCCtgtgaaaaaagtgacaatattGACGTTGGCTCGATTTGTCCATTGTA
ATAACGCTCCTGCTGCAATTGGGTGTAGTTCCTCAGGATCCTCATTATCT
TCTGCTTGCAATAGATTTTCATTGATGAAGTTCAATACTTTAAAATAATC
TTCACACTTCGACAGAGTATTCTCAAGCAAATCGAGATTGTCATCAAGGT
TAATGATTTCCTGTGTAAAGTTTACGAGGTTTTGAAAGAAGTTCTGTGGG
TCTGCATCTCCTGCATTTGCCTCCGCCATTTTGTTGTTAAtcaaagatta
cgtcattttttgtTTGGACAAGTACCCGGTAGGCCGAGCGAAAGTCGGGA
AAATCG Coding sequence (CDS) from alignment at scaffold_252:7846..11001 >TCONS_00055304 ID=TCONS_00055304|Name=TCONS_00055304|organism=Clytia hemisphaerica|type=CDS|length=1290bp|location=Sequence derived from alignment at scaffold_252:7846..11001 (Clytia hemisphaerica)
tcaaattaacatattttcCACCATTTGAACAATGTTAATGTAAGCATGAA
CCCTGTCATTCCTTGGAATATTTTGCGGGACATTTTCCATAATGTGATGA
ATTTGATCATGAGTCAAAGGCAAATTAATTCTTGGAACATTAACCTCATa
atcttcatcttcaatgacTGAATCAACATCTCCTTCTGTTCCAAATAGCA
TTAAACCTTCAACAGGAATGtcattcaaaatctgatgtctAGCCCTGGAA
TTACGTAATAGTCCGGCGGTCCAGAGCTGCAAGGGTGAACTGTTATGTTC
TGTGCTAAGACTATGCTGATTCCATTGAAGGACAAATTCACTCAATGATC
TATTTATTTCATTGTGAAacaccaaatgtaaacaaaaaatatgaatttca
tTTAGTGGGTCGAGAATTCCATCAGATTCCATATCTTGAAACAAATTTAT
ATAGGCTCGAAGAACTCCAGTAGTTACATCCCGATGTAAACGTTCTACTC
TCTGGTTATGAACTGAGCTACCAGTGATCATACTACCTCTATTAGGGCCT
CGTGTTTCCACCATCATTCTTGCAACACCGACGTTTTCTAGACCATAGTC
AGCTCGAACTCTAGACGGCAGCCCATAATTTTGAGATGCATCCTGGAAAA
GATTTAATACAGTGTCTGATTTGTTGTTATTTGCACAATACAAATATGGT
ATCAACCTGGAAAAACCATCAATGCAAGCATGTACCACAAACCGCCATTT
TATCATCTTGTGGTTGCCATCAATGTGCCACAGCGAATTTGGATATTTTA
CGTTATACTTGCGCCTCTTAGTTGTAGTCCTCCATCGCATTATTGTTCCT
TGTGGGTCAATGTCTCTCAGTAAATTTCGAACTCTCCATCTTTGGACATT
AATACCGCGCGCCCTTAAAGCCCCCAACATTCTAGTTTGTCCAATATTAG
GTGTAAGCTCTCTGATACTTTCCATTTCAGCACGAAGGTTTTCATAATTT
ATATCAGTAAAATCTCTGTGATTTTGAATTCTAAGTTCATTTCTTCTTCT
TGAAAGTGTTTTAGGAGAAATACCAAGTAGCTCAGCTATCTTGGtccaag
aaaaatgaagatctcTGAGATATTCAATTTGTTCTTTCGATATTTCGTAT
TTTGGCTGACCAAGGTTTCCAGTATATACTTTAGGACAAGTCATCCCATC
ACTTTCAAAATGATTGTTAATGAGGTCGTTTAAAAGCGAAGAAATCCtgt
gaaaaaagtgacaatattGACGTTGGCTCGATTTGTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055304-exon-scaffold_252-1491911889:7846..11001 | TCONS_00055304-exon-scaffold_252-1491911889:7846..11001 | Clytia hemisphaerica | exon |
| TCONS_00055304-exon-scaffold_252-1510915933:7846..11001 | TCONS_00055304-exon-scaffold_252-1510915933:7846..11001 | Clytia hemisphaerica | exon |
| TCONS_00055304-exon-scaffold_252-1575043694:7846..11001 | TCONS_00055304-exon-scaffold_252-1575043694:7846..11001 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_252 | supercontig | scaffold_252:7846..11001 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
|
