TCONS_00055294 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055294
Unique NameTCONS_00055294
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2153

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055294 ID=TCONS_00055294|Name=TCONS_00055294|organism=Clytia hemisphaerica|type=transcript|length=2153bp
ccactgaattttctggctagaaatcaatggaattcaaatctccAGCCATa
gaaaacatgggaatatcgatCCCCGTCGACTATTGGTCCATTATATTTAC
CCCCACATTTACCCAagagggtctgtgagaaaggggtgaattttacaatt
ttcttttacAGAATCAAAAGCGAAAATAAAATGAGCAACAAAAATTACGA
TGTTATTGATATTCAAATCAAAGAAGAGCCTGCACCCTACCAATCAGATG
ATCCACAGATTTGTTCATTCAACATTAAAATAGATCATTCTGAATATGAA
AATTACCACAAACCTTTAACAGAGtttcaaaacaatggaatgtcACTTAT
GTCAGAATTGCAGATGATCACCGATCTATCGATATTGAATTGCTATGATG
GTGATTTAACGGAAAATATTCAGGACAATTTTCAGCGGGGTTTTTCCAAT
GAAATACagacaaataaaacaaaaagagatGAAGCAAAGATTAACTTAGA
GGAATTTAATGAATCAAACTTGATTAATGATGAGCTGCAGAAATGTAACG
AGAAGCTGCCAGTCAATagttattcaaattttgaatcaaTAGTAGACCAG
AacacaaaattaaaaacagcCCCTGTTGAAAACcaaagaatttctcaaga
aaCATCAATCCAAAATGAATCCAAATCTTTTGAGTGCACAGAATGTGGGG
AATCATTTACACAAAAATATAATCAGCATATTAAAGTGAAACATCAACCT
TTAAAGACTAGATCAATCAATTCCAAGATTAATAATTCGGATATCAACCA
CTTTCAAgggaatcaaaagaaaactttgaGGCAACCATTCcggtggaaaa
ttttggaatgcAATGTTTGTGGGCTGAGGTTTGCGGAGAATAATATACTT
GCAAAACACATGGTCCAACATCAAAAGGCGATACTCAAATGTTCAATTTG
CACAAAAACTTTCAGCACTGATTCTGAATTATGAGAACATCTTCacaaac
acaagaaaaataacgaaaaggcTGATAGTTACACTGATAAAAGTATCAAC
AAAATAAAGATAGATAGAAACTGCAAAGTGATGTTAGAAGATATACAACT
TCTTAATTCAAAAAAACATGCTATAAAAGAGAGTAATCAAAAGCGTTCTT
TGCGTCAACAGTTTCGTTGGAAAAGTTTGGAATGTAATGTATGTGGGCAG
AGGTTTTCAGAGAACAAAGTTCTTGCAAAACACATGATGCAACATCAGAA
TGCAATACCCAAATGCCCAATTggcgagaaaacaatttttgacaGAGTTT
CTAATATGGACAAAGACTTTGAAAAACATGACAACAACATACTTCCGACC
ATAGTAGATAGAAACGGTGGTAAGAAGATATTGGAAGATGCCCAGTCAAC
TGAAACGGCTATGATTATAGTTAGAGATGGTGCAAATATTTCCTCAAAAG
ATAATCTTTGTCAATTCTGTGGAAAAAAGTTCTCCAGAAATGCCAGTCTG
AAGCTACACAAACGAACTGTACATGAAGGTGTTCGAGATTTTAAGTGTAA
GGTTTGTGGAAAGAAATTTACGAGCAGAAAAGGTGTGCTAAACCATGAGC
AAGCTATCCATCAAGTTATACACACTTTTGAATGTGAAATTTGTGGTGTT
CAATTTGGATCGAAAAGTTACCTCACTATACATGTTAAGACGCATCAGCT
GTGATAAATGCGGAAAAGGACTTTTGAGAAGGTCAAATCTTTCAAGACAT
TGTGTAACCCATACtggtatttcaaatttttcaatgtgAGATCTGCAAGA
AACAGTTTACAGAAAAGAGTTCTCtgaagaaacatgaaattatcCAACGA
GGTACAATGTCTTTTAACTATGACaaatctggaaaaaaatttattagtat
taaaaaagcattttcaatGTAAGACATATTGTAGAAAGTTTTAGCCTTCT
AAGCTAAATAAATATTGGAGTTTGAGCTTTTTTTGCAACCCTCCCTTAGG
GGGACTGAAATTAGAAATTGTGATTATTATGACCCTCAGCAGCCCTCAGA
GGGACTTTGAaggtccaaaaaaggcacccttaagggcaATACATACCCta
accctccatttgcctatgtCCCCCTCTCTTGGACTAAGAGTCACTCACTT
AGG
Run BLAST on NCBI

protein sequence of TCONS_00055294-protein

>TCONS_00055294-protein ID=TCONS_00055294-protein|Name=TCONS_00055294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
MSNKNYDVIDIQIKEEPAPYQSDDPQICSFNIKIDHSEYENYHKPLTEFQ
NNGMSLMSELQMITDLSILNCYDGDLTENIQDNFQRGFSNEIQTNKTKRD
EAKINLEEFNESNLINDELQKCNEKLPVNSYSNFESIVDQNTKLKTAPVE
NQRISQETSIQNESKSFECTECGESFTQKYNQHIKVKHQPLKTRSINSKI
NNSDINHFQGNQKKTLRQPFRWKILECNVCGLRFAENNILAKHMVQHQKA
ILKCSICTKTFSTDSEL
Run BLAST on NCBI

transcript from alignment at scaffold_251:845836..847988

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055294 ID=TCONS_00055294|Name=TCONS_00055294|organism=Clytia hemisphaerica|type=transcript|length=2153bp|location=Sequence derived from alignment at scaffold_251:845836..847988 (Clytia hemisphaerica)
CCTAAGTGAGTGACTCTTAGTCCAAGAGAGGGGGacataggcaaatggag
ggttaGGGTATGTATtgcccttaagggtgccttttttggacctTCAAAGT
CCCTCTGAGGGCTGCTGAGGGTCATAATAATCACAATTTCTAATTTCAGT
CCCCCTAAGGGAGGGTTGCAAAAAAAGCTCAAACTCCAATATTTATTTAG
CTTAGAAGGCTAAAACTTTCTACAATATGTCTTACattgaaaatgctttt
ttaatactaataaatttttttccagatttGTCATAGTTAAAAGACATTGT
ACCTCGTTGgataatttcatgtttcttcaGAGAACTCTTTTCTGTAAACT
GTTTCTTGCAGATCTcacattgaaaaatttgaaataccaGTATGGGTTAC
ACAATGTCTTGAAAGATTTGACCTTCTCAAAAGTCCTTTTCCGCATTTAT
CACAGCTGATGCGTCTTAACATGTATAGTGAGGTAACTTTTCGATCCAAA
TTGAACACCACAAATTTCACATTCAAAAGTGTGTATAACTTGATGGATAG
CTTGCTCATGGTTTAGCACACCTTTTCTGCTCGTAAATTTCTTTCCACAA
ACCTTACACTTAAAATCTCGAACACCTTCATGTACAGTTCGTTTGTGTAG
CTTCAGACTGGCATTTCTGGAGAACTTTTTTCCACAGAATTGACAAAGAT
TATCTTTTGAGGAAATATTTGCACCATCTCTAACTATAATCATAGCCGTT
TCAGTTGACTGGGCATCTTCCAATATCTTCTTACCACCGTTTCTATCTAC
TATGGTCGGAAGTATGTTGTTGTCATGTTTTTCAAAGTCTTTGTCCATAT
TAGAAACTCtgtcaaaaattgttttctcgccAATTGGGCATTTGGGTATT
GCATTCTGATGTTGCATCATGTGTTTTGCAAGAACTTTGTTCTCTGAAAA
CCTCTGCCCACATACATTACATTCCAAACTTTTCCAACGAAACTGTTGAC
GCAAAGAACGCTTTTGATTACTCTCTTTTATAGCATGTTTTTTTGAATTA
AGAAGTTGTATATCTTCTAACATCACTTTGCAGTTTCTATCTATCTTTAT
TTTGTTGATACTTTTATCAGTGTAACTATCAgccttttcgttatttttct
tgtgtttgtGAAGATGTTCTCATAATTCAGAATCAGTGCTGAAAGTTTTT
GTGCAAATTGAACATTTGAGTATCGCCTTTTGATGTTGGACCATGTGTTT
TGCAAGTATATTATTCTCCGCAAACCTCAGCCCACAAACATTgcattcca
aaattttccaccgGAATGGTTGCCtcaaagttttcttttgattcccTTGA
AAGTGGTTGATATCCGAATTATTAATCTTGGAATTGATTGATCTAGTCTT
TAAAGGTTGATGTTTCACTTTAATATGCTGATTATATTTTTGTGTAAATG
ATTCCCCACATTCTGTGCACTCAAAAGATTTGGATTCATTTTGGATTGAT
GtttcttgagaaattctttgGTTTTCAACAGGGgctgtttttaattttgt
gtTCTGGTCTACTAttgattcaaaatttgaataactATTGACTGGCAGCT
TCTCGTTACATTTCTGCAGCTCATCATTAATCAAGTTTGATTCATTAAAT
TCCTCTAAGTTAATCTTTGCTTCatctctttttgttttatttgtctGTAT
TTCATTGGAAAAACCCCGCTGAAAATTGTCCTGAATATTTTCCGTTAAAT
CACCATCATAGCAATTCAATATCGATAGATCGGTGATCATCTGCAATTCT
GACATAAGTgacattccattgttttgaaaCTCTGTTAAAGGTTTGTGGTA
ATTTTCATATTCAGAATGATCTATTTTAATGTTGAATGAACAAATCTGTG
GATCATCTGATTGGTAGGGTGCAGGCTCTTCTTTGATTTGAATATCAATA
ACATCGTAATTTTTGTTGCTCATTTTATTTTCGCTTTTGATTCTgtaaaa
gaaaattgtaaaattcacccctttctcacagaccctctTGGGTAAATGTG
GGGGTAAATATAATGGACCAATAGTCGACGGGGatcgatattcccatgtt
ttctATGGCTggagatttgaattccattgatttctagccagaaaattcag
tgg

Coding sequence (CDS) from alignment at scaffold_251:845836..847988

>TCONS_00055294 ID=TCONS_00055294|Name=TCONS_00055294|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_251:845836..847988 (Clytia hemisphaerica)
TCATAATTCAGAATCAGTGCTGAAAGTTTTTGTGCAAATTGAACATTTGA
GTATCGCCTTTTGATGTTGGACCATGTGTTTTGCAAGTATATTATTCTCC
GCAAACCTCAGCCCACAAACATTgcattccaaaattttccaccgGAATGG
TTGCCtcaaagttttcttttgattcccTTGAAAGTGGTTGATATCCGAAT
TATTAATCTTGGAATTGATTGATCTAGTCTTTAAAGGTTGATGTTTCACT
TTAATATGCTGATTATATTTTTGTGTAAATGATTCCCCACATTCTGTGCA
CTCAAAAGATTTGGATTCATTTTGGATTGATGtttcttgagaaattcttt
gGTTTTCAACAGGGgctgtttttaattttgtgtTCTGGTCTACTAttgat
tcaaaatttgaataactATTGACTGGCAGCTTCTCGTTACATTTCTGCAG
CTCATCATTAATCAAGTTTGATTCATTAAATTCCTCTAAGTTAATCTTTG
CTTCatctctttttgttttatttgtctGTATTTCATTGGAAAAACCCCGC
TGAAAATTGTCCTGAATATTTTCCGTTAAATCACCATCATAGCAATTCAA
TATCGATAGATCGGTGATCATCTGCAATTCTGACATAAGTgacattccat
tgttttgaaaCTCTGTTAAAGGTTTGTGGTAATTTTCATATTCAGAATGA
TCTATTTTAATGTTGAATGAACAAATCTGTGGATCATCTGATTGGTAGGG
TGCAGGCTCTTCTTTGATTTGAATATCAATAACATCGTAATTTTTGTTGC
TCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034837XLOC_034837Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055294-proteinTCONS_00055294-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055294-exon-scaffold_251-1491911889:845836..847988TCONS_00055294-exon-scaffold_251-1491911889:845836..847988Clytia hemisphaericaexon
TCONS_00055294-exon-scaffold_251-1510915933:845836..847988TCONS_00055294-exon-scaffold_251-1510915933:845836..847988Clytia hemisphaericaexon
TCONS_00055294-exon-scaffold_251-1575043694:845836..847988TCONS_00055294-exon-scaffold_251-1575043694:845836..847988Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:845836..847988 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.3547	6.78046	1.88037	2.32483	2.28882	1.24467	2.11168	2.48214	1.12265	0.761966	1.25729	0.692796	0.436947	0.516798	0.849756	0.511564	0.712406	0.828488	0.2716	0.243609	1.18222	1.39427	8.5583	7.83781	0.548634	1.41647	0.700677	0.694369	4.33477	4.60218
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00055294 vs. Swiss-Prot (Human)
Match: ZNF16 (Zinc finger protein 16 OS=Homo sapiens GN=ZNF16 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.753e-22
Identity = 92/359 (25.63%), Postives = 144/359 (40.11%), Query Frame = 1 
Query:  631 NQRISQETSIQNESKSFECTECGESFTQKYNQHIKVKHQPLKTRXXXXXXXXXXXXHFQGNQKKTLRQPFRW--KILECNVCGLRFAENNILAKHMVQH-QKAILKCSICTKTFSTDSXXXXXXXXXXXXXXXADSYTDKSINKIKIDRNCKVMLEDIQLLNSKKHAIKESNQKRSLRQQFRWKSLECNVCGQRFSENKVLAKHMMQHQNAIP-KCPIGEKTIFDRVSNMDKDFEKHDNNILPTIVDRNGGKKILEDAQSTETAMIIVRDGANISSKDNLCQFCGKKFSRNASLKLHKRTVHEGVRDFKCKVCGKKFTSRKGVLNHEQAIHQVIHTFECEICGVQFGSKSYLTIHVKTH 1695
            N  + Q   +     SF C +CG++F+Q  N  +K +H+   +              F+G+   +  Q      +   CN CG  F++N+ L KH   H  +   +C+ C K F   S L +H   H        S   K+  +                          SN  +  R     K  EC  CG+ FS++  L KH   H    P +C    K  F RVSN+ K    H         D   GK        ++++ +I     +   K ++C  CGK FS ++ L+ H+  +H G + ++C VCGK F+    ++ H Q +H     + C  CG  FG  S L +H + H
Sbjct:  221 NPDLIQRQIVHTGEASFMCDDCGKTFSQ--NSVLKNRHRSHMSEKAYQCSECGKA--FRGHSDFSRHQSHHSSERPYMCNECGKAFSQNSSLKKHQKSHMSEKPYECNECGKAFRRSSNLIQHQRIHSGEKPYVCSECGKAFRR-------------------------SSNLIKHHRTHTGEKPFECGECGKAFSQSAHLRKHQRVHTGEKPYECNDCGKP-FSRVSNLIKHHRVHTGEKPYKCSD--CGKAF------SQSSSLIQHRRIHTGEKPHVCNVCGKAFSYSSVLRKHQ-IIHTGEKPYRCSVCGKAFSHSSALIQH-QGVHTGDKPYACHECGKTFGRSSNLILHQRVH 539

HSP 2 Score: 29.261 bits (64), Expect = 1.753e-22
Identity = 13/33 (39.39%), Postives = 18/33 (54.55%), Query Frame = 2 
Query: 1685 LRRISCDKCGKGLLRRSNLSRHCVTHTGISNFS 1783
            L+   C++CGK   R SNL  H   HTG   ++
Sbjct:  570 LKPHECNQCGKAFNRSSNLIHHQKVHTGEKPYT 602

HSP 3 Score: 28.8758 bits (63), Expect = 1.753e-22
Identity = 13/38 (34.21%), Postives = 20/38 (52.63%), Query Frame = 3 
Query: 1779 FQCEICKKQFTEKSSLKKHEIIQRGTMSFNYDKSGKKF 1892
            + C  C K F++ S L +H+II  G   +   + GK F
Sbjct:  601 YTCVECGKGFSQSSHLIQHQIIHTGERPYKCSECGKAF 638
The following BLAST results are available for this feature:
BLAST of TCONS_00055294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZNF161.753e-2225.63Zinc finger protein 16 OS=Homo sapiens GN=ZNF16 PE... [more]
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