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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055293 ID=TCONS_00055293|Name=TCONS_00055293|organism=Clytia hemisphaerica|type=transcript|length=2217bpRun BLAST on NCBI protein sequence of TCONS_00055293-protein >TCONS_00055293-protein ID=TCONS_00055293-protein|Name=TCONS_00055293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=491bp MFHHDDIDIQIKDEIEDDQQNFSFSIKMNRTVCDLLYHKPFISEFENNGMRun BLAST on NCBI transcript from alignment at scaffold_251:843343..845559 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055293 ID=TCONS_00055293|Name=TCONS_00055293|organism=Clytia hemisphaerica|type=transcript|length=2217bp|location=Sequence derived from alignment at scaffold_251:843343..845559 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_251:843343..845559 >TCONS_00055293 ID=TCONS_00055293|Name=TCONS_00055293|organism=Clytia hemisphaerica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_251:843343..845559 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055293 vs. Swiss-Prot (Human)
Match: ZNF16 (Zinc finger protein 16 OS=Homo sapiens GN=ZNF16 PE=1 SV=3) HSP 1 Score: 110.923 bits (276), Expect = 1.411e-27 Identity = 90/287 (31.36%), Postives = 136/287 (47.39%), Query Frame = 2
Query: 686 FKSTECGKSFTRKYNLNXXXXXXXXXXXXXXXXXTMQRNRKRSL----RQRFSWKCLECNVCGQRFSENKILAKHMVQHQ-QVILKCPICEKSLNTDYEMDKHLQVH---ESFKNSDSN--FKHHSNMTQ--TLETFDXXXXXXXXXXXXXXXXLMTSKNIAYDHSKDHLCQVCGRNFSTNDNLKRHKQTVHEGLSKDHLCQVCGQNFSTNANLKRHERTVHEGVRDFMCKVCGKEFSNRRGMLNHERVIHRGIKAFECEICGIRFGLKSNLTRHIKIHQGTESFSC 1510
++ ECGK+F R NL +H ++ K R +L R K EC CG+ FS++ L KH H + +C C K + + KH +VH + +K SD F S++ Q + T +K + + +++ I + K + C VCG+ FS + L +H Q VH G K + C CG+ F ++NL H+R VH G + + C CGK FS ++ H+R IH G+K EC CG F SNL H K+H G + ++C
Sbjct: 321 YECNECGKAFRRSSNLIQHQRIHSGEKPYVCSECGKAFRRSSNLIKHHRTHTGEKPFECGECGKAFSQSAHLRKHQRVHTGEKPYECNDCGKPFSRVSNLIKHHRVHTGEKPYKCSDCGKAFSQSSSLIQHRRIHTGEKPHVCNVCGKAFSYSSVLRKHQIIHTGEKPYRCSVCGKAFSHSSALIQH-QGVHTG-DKPYACHECGKTFGRSSNLILHQR-VHTGEKPYECTECGKTFSQSSTLIQHQR-IHNGLKPHECNQCGKAFNRSSNLIHHQKVHTGEKPYTC 603 HSP 2 Score: 31.9574 bits (71), Expect = 1.411e-27 Identity = 13/26 (50.00%), Postives = 19/26 (73.08%), Query Frame = 3
Query: 1518 ECGKRFSTNSSLKRHRVMHTGA*PIR 1595
ECGK FS +S L +H+++HTG P +
Sbjct: 605 ECGKGFSQSSHLIQHQIIHTGERPYK 630 HSP 3 Score: 100.908 bits (250), Expect = 2.073e-23 Identity = 72/257 (28.02%), Postives = 119/257 (46.30%), Query Frame = 2
Query: 848 CNVCGQRFSENKILAKHMVQH-QQVILKCPICEKSLNTDYEMDKHLQVH------------ESFKNSDSNFKHHSNMT-----------------------QTLETFDXXXXXXXXXXXXXXXXLMTSKNIAYDHSKDHLCQVCGRNFSTNDNLKRHKQTVHEGLSKDHLCQVCGQNFSTNANLKRHERTVHEGVRDFMCKVCGKEFSNRRGMLNHERVIHRGIKAFECEICGIRFGLKSNLTRHIKIHQGTESFSC 1510
CN CG+ FS+N L KH H + +C C K+ + +H ++H ++F+ S + KHH T Q + T +K + V+ + + + K + C CG+ FS + +L +H++ +H G K H+C VCG+ FS ++ L++H+ +H G + + C VCGK FS+ ++ H+ V H G K + C CG FG SNL H ++H G + + C
Sbjct: 295 CNECGKAFSQNSSLKKHQKSHMSEKPYECNECGKAFRRSSNLIQHQRIHSGEKPYVCSECGKAFRRSSNLIKHHRTHTGEKPFECGECGKAFSQSAHLRKHQRVHTGEKPYECNDCGKPFSRVSNLIKHHRVHTGEKPYKCSDCGKAFSQSSSLIQHRR-IHTG-EKPHVCNVCGKAFSYSSVLRKHQ-IIHTGEKPYRCSVCGKAFSHSSALIQHQGV-HTGDKPYACHECGKTFGRSSNLILHQRVHTGEKPYEC 547 HSP 4 Score: 27.7202 bits (60), Expect = 2.073e-23 Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = 3
Query: 1518 ECGKRFSTNSSLKRHRVMHTGA*P 1589
ECGK FS +S+L +H+ +H G P
Sbjct: 549 ECGKTFSQSSTLIQHQRIHNGLKP 572 HSP 5 Score: 105.531 bits (262), Expect = 2.166e-23 Identity = 85/279 (30.47%), Postives = 132/279 (47.31%), Query Frame = 2
Query: 686 FKSTECGKSFTRKYNLNXXXXXXXXXXXXXXXXXTMQRNRKRSLRQRFSWKCLE----CNVCGQRFSENKILAKHMVQHQ-QVILKCPICEKSLNTDYEMDKHLQVHESFK-----NSDSNFKHHSNMT--QTLETFDXXXXXXXXXXXXXXXXLMTSKNIAYDHSKDHLCQVCGRNFSTNDNLKRHKQTVHEGLSKDHLCQVCGQNFSTNANLKRHERTVHEGVRDFMCKVCGKEFSNRRGMLNHERVIHRGIKAFECEICGIRFGLKSNLTRHIKIH 1486
++ +CGK F+R NL KH ++ K K ++ SL Q E CNVCG+ FS + +L KH + H + +C +C K+ + + +H VH K F SN+ Q + T +K + + + ++ K H C CG+ F+ + NL H Q VH G K + C CG+ FS +++L +H+ +H G R + C CGK FS R ++ H+R IH G+K ++C CG F +S L +H IH
Sbjct: 405 YECNDCGKPFSRVSNLIKHHRVHTGEKPYKCSDCGKAFSQSSSLIQHRRIHTGEKPHVCNVCGKAFSYSSVLRKHQIIHTGEKPYRCSVCGKAFSHSSALIQHQGVHTGDKPYACHECGKTFGRSSNLILHQRVHTGEKPYECTECGKTFSQSSTLIQHQRIHNGLKPHECNQCGKAFNRSSNLIHH-QKVHTG-EKPYTCVECGKGFSQSSHLIQHQ-IIHTGERPYKCSECGKAFSQRSVLIQHQR-IHTGVKPYDCAACGKAFSQRSKLIKHQLIH 679 HSP 6 Score: 89.7373 bits (221), Expect = 1.314e-21 Identity = 66/231 (28.57%), Postives = 110/231 (47.62%), Query Frame = 2
Query: 842 LECNVCGQRFSENK-ILAKHMVQHQQVILKCPICEKSLNTDYEMDKHLQVHESFK-----NSDSNFKHHSNMT--QTLETFDXXXXXXXXXXXXXXXXLMTSKNIAYDHSKDHLCQVCGRNFSTNDNLKRHKQTVHEGLSKDHLCQVCGQNFSTNANLKRHERTVHEGVRDFMCKVCGKEFSNRRGMLNHERVIHRGIKAFECEICGIRFGLKSNLTRHIKIHQGTESFSC 1510
L CN CG+ F N ++ + +V + C C K+ + + + + H S K F+ HS+ + Q+ + ++ + + + + ++ K + C CG+ F + NL +H Q +H G K ++C CG+ F ++NL +H RT H G + F C CGK FS + H+RV H G K +EC CG F SNL +H ++H G + + C
Sbjct: 209 LICNECGKTFQGNPDLIQRQIVHTGEASFMCDDCGKTFSQNSVLKNRHRSHMSEKAYQCSECGKAFRGHSDFSRHQSHHSSERPYMCNECGKAFSQNSSLKKHQKSHMSEKPYECNECGKAFRRSSNLIQH-QRIHSG-EKPYVCSECGKAFRRSSNLIKHHRT-HTGEKPFECGECGKAFSQSAHLRKHQRV-HTGEKPYECNDCGKPFSRVSNLIKHHRVHTGEKPYKC 435 HSP 7 Score: 32.7278 bits (73), Expect = 1.314e-21 Identity = 13/25 (52.00%), Postives = 19/25 (76.00%), Query Frame = 3
Query: 1521 CGKRFSTNSSLKRHRVMHTGA*PIR 1595
CGK FS +S L++H+++HTG P R
Sbjct: 466 CGKAFSYSSVLRKHQIIHTGEKPYR 490 HSP 8 Score: 94.7449 bits (234), Expect = 4.394e-21 Identity = 81/284 (28.52%), Postives = 126/284 (44.37%), Query Frame = 2
Query: 683 SFKSTECGKSFTRKYNLNXXXXXXXXXXXXXXXXXTMQRNRKRSLRQRFSWKCLECNVCGQRFSENKILAKHMVQH-QQVILKCPICEKSLNTDYEMDKHLQVHESFKNSDSN-----FKHHSNMT--QTLETFDXXXXXXXXXXXXXXXXLMTSKNIAYDHSKDHLCQVCGRNFSTNDNLKRHKQTVHEGLSKDHLCQVCGQNFSTNANLKRHERTVHEGVRDFMCKVCGKEFSNRRGMLNHERVIHRGIKAFECEICGIRFGLKSNLTRHIKIHQGTESFSC 1510
SF +CGK+F++ L +NR RS S K +C+ CG+ F + ++H H + C C K+ + + + KH + H S K + N F+ SN+ Q + + +K + + + + + K C CG+ FS + +L++H Q VH G K + C CG+ FS +NL +H R VH G + + C CGK FS ++ H R IH G K C +CG F S L +H IH G + + C
Sbjct: 236 SFMCDDCGKTFSQNSVL---------------------KNRHRS---HMSEKAYQCSECGKAFRGHSDFSRHQSHHSSERPYMCNECGKAFSQNSSLKKHQKSHMSEKPYECNECGKAFRRSSNLIQHQRIHSGEKPYVCSECGKAFRRSSNLIKHHRTHTGEKPFECGECGKAFSQSAHLRKH-QRVHTG-EKPYECNDCGKPFSRVSNLIKHHR-VHTGEKPYKCSDCGKAFSQSSSLIQHRR-IHTGEKPHVCNVCGKAFSYSSVLRKHQIIHTGEKPYRC 491 HSP 9 Score: 26.1794 bits (56), Expect = 4.394e-21 Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = 3
Query: 1518 ECGKRFSTNSSLKRHRVMHTGA*P 1589
ECGK F +S+L H+ +HTG P
Sbjct: 521 ECGKTFGRSSNLILHQRVHTGEKP 544 The following BLAST results are available for this feature:
BLAST of TCONS_00055293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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