TCONS_00055293-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055293-protein
Unique NameTCONS_00055293-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055293-protein ID=TCONS_00055293-protein|Name=TCONS_00055293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=491bp
MFHHDDIDIQIKDEIEDDQQNFSFSIKMNRTVCDLLYHKPFISEFENNGM
SLMSELQLITDLSTLDYFGDFLTENDQDLYMEEQFADSSRSLMNGTNDES
VNYEFIDLTSDENTEVPFNNLDLHQEVSGCTPVVKDRTTFDMVSPALPKG
NHNFAKHRKDELQLIDSFELQQRDISGCTPKVPAVEDRTTFDMLSHALPK
GNHKQKQDDLQPIDSFKSTECGKSFTRKYNLNKHCKMKHKSKSIKKKVKT
MQRNRKRSLRQRFSWKCLECNVCGQRFSENKILAKHMVQHQQVILKCPIC
EKSLNTDYEMDKHLQVHESFKNSDSNFKHHSNMTQTLETFDKEALKKATA
TKTTDVALMTSKNIAYDHSKDHLCQVCGRNFSTNDNLKRHKQTVHEGLSK
DHLCQVCGQNFSTNANLKRHERTVHEGVRDFMCKVCGKEFSNRRGMLNHE
RVIHRGIKAFECEICGIRFGLKSNLTRHIKIHQGTESFSCE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034836XLOC_034836Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055293TCONS_00055293Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 295..317
e-value: 0.018
score: 24.2
coord: 372..395
e-value: 0.012
score: 24.7
coord: 216..239
e-value: 12.0
score: 12.7
coord: 402..425
e-value: 0.018
score: 24.2
coord: 268..290
e-value: 0.056
score: 22.6
coord: 431..454
e-value: 0.0014
score: 27.9
coord: 460..482
e-value: 0.001
score: 28.3
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 270..290
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 433..454
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 374..395
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 404..425
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 462..482
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 297..317
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 216..244
score: 10.325
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 372..400
score: 12.258
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 460..487
score: 12.882
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 295..322
score: 9.12
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 268..290
score: 9.743
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 431..459
score: 13.006
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 402..430
score: 13.173
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 430..482
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 370..396
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 266..317
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 400..440
NoneNo IPR availableGENE3D3.30.160.60coord: 281..306
e-value: 4.8E-8
score: 32.7
coord: 307..380
e-value: 2.3E-10
score: 40.1
coord: 415..443
e-value: 1.7E-14
score: 53.4
NoneNo IPR availableGENE3D3.30.160.60coord: 225..243
e-value: 3.1E-4
score: 20.5
NoneNo IPR availableGENE3D3.30.160.60coord: 183..224
e-value: 3.5E-4
score: 20.2
NoneNo IPR availableGENE3D3.30.160.60coord: 244..280
e-value: 0.0035
score: 16.8
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 374..395
e-value: 2.2E-4
score: 21.4
coord: 431..454
e-value: 0.009
score: 16.3
coord: 460..482
e-value: 2.0E-4
score: 21.5
coord: 404..425
e-value: 3.0E-4
score: 21.0
coord: 220..239
e-value: 0.0044
score: 17.3
NoneNo IPR availableGENE3D2.40.155.10coord: 381..400
e-value: 3.0E-8
score: 33.5
NoneNo IPR availableGENE3D2.40.155.10coord: 444..491
e-value: 1.5E-16
score: 60.7
NoneNo IPR availableGENE3D3.30.160.60coord: 401..414
e-value: 4.3E-5
score: 23.0

Blast
[Close]
BLAST of TCONS_00055293-protein vs. Swiss-Prot (Human)
Match: ZN250 (Zinc finger protein 250 OS=Homo sapiens GN=ZNF250 PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.015e-27
Identity = 93/348 (26.72%), Postives = 147/348 (42.24%), Query Frame = 0 
Query:  183 PAVEDRTTFDMLSHALPKGNHKQKQDDLQPIDSFKSTECGKSFTRKYNLNKHCKMKHKSK----SIKKKVKTMQRNRKRSLRQRFSWKCLECNVCGQRFSENKILAKH------------------------MVQHQQV-----ILKCPICEKSLNTDYEMDKHLQVHESFKNSDSN-------FKHHSNMTQTLETFDKEALKKATATKTTDVALMTSKNIAYDHSKDHLCQVCGRNFSTNDNLKRHKQTVHEGLSKDHLCQVCGQNFSTNANLKRHERTVHEGVRDFMCKVCGKEFSNRRGMLNHERVIHRGIKAFECEICGIRFGLKSNLTRHIKIHQGTESFSC 490
            P   D     +LS ++P   H+      +P   +   ECGK F R  +L +H ++    K    S+  K  +      +  R     K  ECN CG+ F  +  LA+H                        ++QHQ++        CP+C K+ N    +  H +VH   K    N        K      Q + T +K           +D +++   +  +   K + C  CG+ FS    L  H++   E   K + C  CG+ F  +++L +H+R VH G + ++C  CG  FS RR ++ HER IH G K F+C  CG  F LK+ L  H++ H G + + C
Sbjct:  169 PNSVDHREVQVLSQSMPLTPHQAVPSGERP---YMCVECGKCFGRSSHLLQHQRIHTGEKPYVCSVCGKAFSQSSVLSKHRRIHTGEKPYECNECGKAFRVSSDLAQHHKIHTGEKPHECLECRKAFTQLSHLIQHQRIHTGERPYVCPLCGKAFNHSTVLRSHQRVHTGEKPHRCNECGKTFSVKRTLLQHQRIHTGEKPYTCSECGKAFSDRSVLIQHHNVHTGEKPYECSECGKTFSHRSTLMNHERIHTE--EKPYACYECGKAFVQHSHLIQHQR-VHTGEKPYVCGECGHAFSARRSLIQHER-IHTGEKPFQCTECGKAFSLKATLIVHLRTHTGEKPYEC 509
The following BLAST results are available for this feature:
BLAST of TCONS_00055293-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN2501.015e-2726.72Zinc finger protein 250 OS=Homo sapiens GN=ZNF250 ... [more]
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