TCONS_00055282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055282
Unique NameTCONS_00055282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length730

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055282 ID=TCONS_00055282|Name=TCONS_00055282|organism=Clytia hemisphaerica|type=transcript|length=730bp
ATTATTATGTCCCAAGGGACGAACTTTGTTTTCCAATATGCTTAAAAAGT
GATGGATTATGATTTGCTTTGTATTCACCCATCAATCCAAGCATATGAGT
ATAACCCCAATCCACTGGTAGCTCATTGTAGAATACTTTAATAAAGCCGG
CAAAAAGCGGTAAATAGTGAGCCGGAATCAACCGTCCGATAAAACCCATC
TTGTAATATTCGGACACTATCCATGGTTTATATTTTGGCCTTGTTTCTTT
CTCATTCTTAAAGATAACTGGTTCTTTATTTCGAGCGCTGTTCAAACGAT
TCATATCTTCCATGATTGTGTCAAAATATTGTTCATTGGCCAAAACATCG
TCTTCAATTTGTAAGTAATAGTTGCATAGATTTTGAACGTATTGAAAAAT
GAAGGCGTAATCTAAACTCTGTTTTGAGCGCCAATACATTCTTTGACTGG
TGTCATTAAATGTTGGTGTTAAATCATGAAGAGGAAGATAAAACCGTTTC
GGGATTCCAATTATCCCGATTAAACCCGATCGGATTTCGTTTGGGAACTG
GTCTTTTAGCTTTTGGTAGATGAATGTCTTTTTCGTTTTATCACTATCAG
CAAGAATTATAAGAATCATGACTTGTCTTTTATCTTCTTTTGAGAGAGTT
TTGATCAAAGATTTGATTGTACGATCCAAGTAGAAGCTCGTTTTGTTTTT
GTACGACCGATAAACCGTGGGCACTCCGAT
Run BLAST on NCBI

protein sequence of TCONS_00055282-protein

>TCONS_00055282-protein ID=TCONS_00055282-protein|Name=TCONS_00055282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
IGVPTVYRSYKNKTSFYLDRTIKSLIKTLSKEDKRQVMILIILADSDKTK
KTFIYQKLKDQFPNEIRSGLIGIIGIPKRFYLPLHDLTPTFNDTSQRMYW
RSKQSLDYAFIFQYVQNLCNYYLQIEDDVLANEQYFDTIMEDMNRLNSAR
NKEPVIFKNEKETRPKYKPWIVSEYYKMGFIGRLIPAHYLPLFAGFIKVF
YNELPVDWGYTHMLGLMGEYKANHNPSLFKHIGKQSSSLGT
Run BLAST on NCBI

transcript from alignment at scaffold_251:727127..727856

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055282 ID=TCONS_00055282|Name=TCONS_00055282|organism=Clytia hemisphaerica|type=transcript|length=730bp|location=Sequence derived from alignment at scaffold_251:727127..727856 (Clytia hemisphaerica)
ATCGGAGTGCCCACGGTTTATCGGTCGTACAAAAACAAAACGAGCTTCTA
CTTGGATCGTACAATCAAATCTTTGATCAAAACTCTCTCAAAAGAAGATA
AAAGACAAGTCATGATTCTTATAATTCTTGCTGATAGTGATAAAACGAAA
AAGACATTCATCTACCAAAAGCTAAAAGACCAGTTCCCAAACGAAATCCG
ATCGGGTTTAATCGGGATAATTGGAATCCCGAAACGGTTTTATCTTCCTC
TTCATGATTTAACACCAACATTTAATGACACCAGTCAAAGAATGTATTGG
CGCTCAAAACAGAGTTTAGATTACGCCTTCATTTTTCAATACGTTCAAAA
TCTATGCAACTATTACTTACAAATTGAAGACGATGTTTTGGCCAATGAAC
AATATTTTGACACAATCATGGAAGATATGAATCGTTTGAACAGCGCTCGA
AATAAAGAACCAGTTATCTTTAAGAATGAGAAAGAAACAAGGCCAAAATA
TAAACCATGGATAGTGTCCGAATATTACAAGATGGGTTTTATCGGACGGT
TGATTCCGGCTCACTATTTACCGCTTTTTGCCGGCTTTATTAAAGTATTC
TACAATGAGCTACCAGTGGATTGGGGTTATACTCATATGCTTGGATTGAT
GGGTGAATACAAAGCAAATCATAATCCATCACTTTTTAAGCATATTGGAA
AACAAAGTTCGTCCCTTGGGACATAATAAT

Coding sequence (CDS) from alignment at scaffold_251:727127..727856

>TCONS_00055282 ID=TCONS_00055282|Name=TCONS_00055282|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_251:727127..727856 (Clytia hemisphaerica)
ATCGGAGTGCCCACGGTTTATCGGTCGTACAAAAACAAAACGAGCTTCTA
CTTGGATCGTACAATCAAATCTTTGATCAAAACTCTCTCAAAAGAAGATA
AAAGACAAGTCATGATTCTTATAATTCTTGCTGATAGTGATAAAACGAAA
AAGACATTCATCTACCAAAAGCTAAAAGACCAGTTCCCAAACGAAATCCG
ATCGGGTTTAATCGGGATAATTGGAATCCCGAAACGGTTTTATCTTCCTC
TTCATGATTTAACACCAACATTTAATGACACCAGTCAAAGAATGTATTGG
CGCTCAAAACAGAGTTTAGATTACGCCTTCATTTTTCAATACGTTCAAAA
TCTATGCAACTATTACTTACAAATTGAAGACGATGTTTTGGCCAATGAAC
AATATTTTGACACAATCATGGAAGATATGAATCGTTTGAACAGCGCTCGA
AATAAAGAACCAGTTATCTTTAAGAATGAGAAAGAAACAAGGCCAAAATA
TAAACCATGGATAGTGTCCGAATATTACAAGATGGGTTTTATCGGACGGT
TGATTCCGGCTCACTATTTACCGCTTTTTGCCGGCTTTATTAAAGTATTC
TACAATGAGCTACCAGTGGATTGGGGTTATACTCATATGCTTGGATTGAT
GGGTGAATACAAAGCAAATCATAATCCATCACTTTTTAAGCATATTGGAA
AACAAAGTTCGTCCCTTGGGACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034825XLOC_034825Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055282-exon-scaffold_251-1491911889:727127..727856TCONS_00055282-exon-scaffold_251-1491911889:727127..727856Clytia hemisphaericaexon
TCONS_00055282-exon-scaffold_251-1510915933:727127..727856TCONS_00055282-exon-scaffold_251-1510915933:727127..727856Clytia hemisphaericaexon
TCONS_00055282-exon-scaffold_251-1575043694:727127..727856TCONS_00055282-exon-scaffold_251-1575043694:727127..727856Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055282-proteinTCONS_00055282-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:727127..727856 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	9.85521	9.36528	7.28647	8.16875	4.47506	3.58582	5.01235	2.31979	1.76624	1.54068	0	0	1.87724	1.36228	2.33597	3.78023	3.16025	3.0854	0.624615	1.13573	2.02041	2.47313	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006759Glyco_transf_54
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016758transferase activity, transferring hexosyl groups
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0016020 membrane
molecular_function GO:0016758 transferase activity, transferring hexosyl groups
Blast
[Close]
BLAST of TCONS_00055282 vs. Swiss-Prot (Human)
Match: MGT4A (Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A OS=Homo sapiens GN=MGAT4A PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.669e-39
Identity = 86/255 (33.73%), Postives = 133/255 (52.16%), Query Frame = -1 
Query:   11 IGVPTVYRSYKNKTSFYLDRTIKSLIKTLSKEDKRQVMILIILADSDKTKKTFIYQKLKDQFPNEIRSGLIGIIGIPKRFYLPLHDLTPTFNDTSQRMYWRSKQSLDYAFIFQYVQNLCNYYLQIEDDVLANEQYFDTIMEDMNRLNSARNKEPVIFKNEKETRPKYKPWIVSEYYKMGFIGRLIPAHYLPLFAGFIKVFYNELPVDWGYTHMLGLM---GEYKANH------------NPSLFKHIGKQSSSLG 730
            +G+PTV R  K+    YL  T+ SLI  L  E+K   +I++ + ++D      +   L+ +F  EI SGL+ +I  P+ +Y  L +L  TF D+ +R+ WR+KQ+LDY F+  Y Q    YY+Q+EDD++  + YF+TI     +L+S                   + W++ E+ ++GFIG++  A  L L   FI +FY E P+DW   H+L +     E  A H             PSLF+H+G  SS  G
Sbjct:  139 MGIPTVKREVKS----YLIETLHSLIDNLYPEEKLDCVIVVFIGETDIDYVHGVVANLEKEFSKEISSGLVEVISPPESYYPDLTNLKETFGDSKERVRWRTKQNLDYCFLMMYAQEKGIYYIQLEDDIIVKQNYFNTIKNFALQLSS-------------------EEWMILEFSQLGFIGKMFQAPDLTLIVEFIFMFYKEKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFRPSLFQHVGLHSSLSG 370
The following BLAST results are available for this feature:
BLAST of TCONS_00055282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MGT4A1.669e-3933.73Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglu... [more]
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